Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203932.1

Orthogroup ID

OG0000531

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 709

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203932.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 523 bp

atgccattgcgccgcaaagaagttagtcgcgaaaggaagcagaggtttgctttcggcaacactcagggtatccgttttgataagttagtcgacatgtgtgccaataggctagggactgaaaccactattcaagtgtttgacaaattgggaagagaaacgggtgtgaaagaatgtaatgcattgataaagagatgcatagagggagctaggattgctcctgatgaagtagttggagaaaagcatatgcagttggcttttgaaatttttaagtcaatgaaggaacagggtttcccgcttgaagaggaaacatatggtccgtttcttgaatatcttatcgacatgggtatgacaaaagagttttgctttttctgccgagttatcaaagatgacaaccctttgtcagtttcaagattaggatactatgagatgatgttgtggatcagagtcaatgatgaaaaaaagattcaagagctctgtaatgacattgagagttacgatggagtaaacaagtcaattttacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

174

Amino Acids

20.33

Weight (kDa)

5.65

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04790 AT4G04790 AT4G04790 AT4G21880 AT4G21880
fragaria_vesca	FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g21820 FvH4_3g22610 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040 FvH4_7g08040
malus_domestica	MD03G1211600.v1.1
prunus_persica	Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1 Prupe.4G202300_v2.0.a1
pyrus_communis	pycom03g16030
rosa_chinensis	RchiOBHm_Chr4g0410111 RchiOBHm_Chr5g0037541 RchiOBHm_Chr5g0037561
rosa_laevigata	RLG00000008455 RLG00000008458 RLG00000008461 RLG00000008464 RLG00000008467 RLG00000008471 RLG00000008474 RLG00000008477 RLG00000008480 RLG00000008483 RLG00000008486 RLG00000008489 RLG00000033787
rosa_multiflora	Rmu_co8203932.1_g000001 Rmu_sc0000365.1_g000042 Rmu_sc0000365.1_g000043 Rmu_sc0002521.1_g000032
rosa_roxburghii	Rroxscaffold_1G00043480 Rroxscaffold_1G00043550 Rroxscaffold_5G00354910 Rroxscaffold_5G00354940
rosa_rugosa	Rorug05G0165400
rosa_samantha	Rh4AG159300 Rh4AG159500 Rh4CG170700 Rh4CG170900 Rh4DG154300 Rh5AG254800 Rh5BG256500 Rh5CG290100 Rh5DG264900
rosa_wichuraiana	Rw4G013230 Rw4G013270 Rw5G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	13, 293
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	261
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	6 cut(s)	131, 260, 299, 326, 408, 467
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	2 cut(s)	206, 472
AluI	AGCT	2 cut(s)	206, 472
Alw21I	GWGCWC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciVI	GTATCC	2 cut(s)	80, 410
BfaI	CTAG	2 cut(s)	110, 207
BfuI	GTATCC	2 cut(s)	80, 410
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	5
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	438
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	2 cut(s)	13, 293
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	5
BssMI	GATC	1 cut(s)	438
Bst6I	CTCTTC	2 cut(s)	145, 294
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 369
BstNSI	RCATGY	1 cut(s)	97
BstUI	CGCG	1 cut(s)	30
BsuI	GTATCC	2 cut(s)	80, 410
BtuMI	TCGCGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	314
CviAII	CATG	2 cut(s)	94, 340
CviJI	RGCY	4 cut(s)	109, 206, 254, 472
CviKI_1	RGCY	4 cut(s)	109, 206, 254, 472
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	145, 294
EarI	CTCTTC	2 cut(s)	145, 294
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoT22I	ATGCAT	2 cut(s)	181, 197
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	2 cut(s)	97, 343
FaiI	YATR	9 cut(s)	95, 197, 243, 245, 310, 312, 341, 347, 423
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	93, 339
FauI	CCCGC	1 cut(s)	300
FauNDI	CATATG	2 cut(s)	243, 310
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	2 cut(s)	110, 207
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	97, 343
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	444, 463
Hpy166II	GTNNAC	2 cut(s)	91, 505
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	5 cut(s)	29, 218, 323, 408, 467
Hpy8I	GTNNAC	2 cut(s)	91, 505
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	179, 195, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 369
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	97, 343
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	203, 220
LpnPI	CCDG	3 cut(s)	50, 231, 269
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	110, 207
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	2 cut(s)	162, 311
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	3 cut(s)	143, 261, 513
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	36, 193, 295
Mph1103I	ATGCAT	2 cut(s)	181, 197
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	212, 369
NdeI	CATATG	2 cut(s)	243, 310
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	97, 343
NmeAIII	GCCGAG	1 cut(s)	398
NruI	TCGCGA	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	181, 197
NspI	RCATGY	1 cut(s)	97
PciI	ACATGT	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PscI	ACATGT	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	314
RruI	TCGCGA	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	474
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	3 cut(s)	47, 208, 474
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	143, 261, 513
SsiI	CCGC	2 cut(s)	13, 293
SspMI	CTAG	2 cut(s)	110, 207
SstI	GAGCTC	1 cut(s)	474
TaqI	TCGA	2 cut(s)	90, 336
TasI	AATT	3 cut(s)	143, 261, 513
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	237, 290, 468
TspGWI	ACGGA	2 cut(s)	62, 306
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	110, 207
Zsp2I	ATGCAT	2 cut(s)	181, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.