Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 376 - 536 | 1e-12 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 448 - 563 | 2.7e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 463 - 521 | 2.7e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 474 - 521 | 2.2e-10 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1847 |
| Acc36I | ACCTGC | 1 cut(s) | 1999 |
| AccB1I | GGYRCC | 1 cut(s) | 1376 |
| AccI | GTMKAC | 2 cut(s) | 372, 2096 |
| AccII | CGCG | 1 cut(s) | 312 |
| AciI | CCGC | 8 cut(s) | 81, 102, 186, 295, 575, 1049, 1146, 2250 |
| AclWI | GGATC | 4 cut(s) | 728, 1916, 2028, 2354 |
| AcuI | CTGAAG | 1 cut(s) | 1590 |
| AcyI | GRCGYC | 2 cut(s) | 111, 1418 |
| AdeI | CACNNNGTG | 1 cut(s) | 827 |
| AfaI | GTAC | 5 cut(s) | 193, 1436, 1695, 2032, 2392 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 844 |
| AflII | CTTAAG | 2 cut(s) | 1154, 2272 |
| AflIII | ACRYGT | 2 cut(s) | 375, 1584 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1994 |
| AjnI | CCWGG | 3 cut(s) | 160, 207, 924 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1619, 1651 |
| AleI | CACNNNNGTG | 1 cut(s) | 2193 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 555, 587 |
| Alw21I | GWGCWC | 2 cut(s) | 756, 1863 |
| Alw26I | GTCTC | 3 cut(s) | 133, 1904, 2177 |
| AlwI | GGATC | 4 cut(s) | 728, 1916, 2028, 2354 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 987 |
| AoxI | GGCC | 1 cut(s) | 2113 |
| ApeKI | GCWGC | 6 cut(s) | 154, 992, 1427, 1661, 2306, 2324 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| AspS9I | GGNCC | 3 cut(s) | 596, 961, 2314 |
| AsuHPI | GGTGA | 5 cut(s) | 90, 885, 1111, 1268, 2146 |
| AvaII | GGWCC | 3 cut(s) | 596, 961, 2314 |
| BanI | GGYRCC | 1 cut(s) | 1376 |
| BanII | GRGCYC | 1 cut(s) | 756 |
| Bbv12I | GWGCWC | 2 cut(s) | 756, 1863 |
| BbvI | GCAGC | 6 cut(s) | 166, 1004, 1414, 1673, 2293, 2311 |
| BccI | CCATC | 5 cut(s) | 47, 773, 1210, 1554, 1934 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 271, 305, 362, 396 |
| BciT130I | CCWGG | 3 cut(s) | 162, 209, 926 |
| BciVI | GTATCC | 2 cut(s) | 362, 692 |
| BcoDI | GTCTC | 3 cut(s) | 133, 1904, 2177 |
| BfaI | CTAG | 6 cut(s) | 150, 392, 489, 1245, 2048, 2117 |
| BfmI | CTRYAG | 4 cut(s) | 1018, 1381, 1992, 2307 |
| BfrI | CTTAAG | 2 cut(s) | 1154, 2272 |
| BfuAI | ACCTGC | 1 cut(s) | 1999 |
| BfuI | GTATCC | 2 cut(s) | 362, 692 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2303 |
| BglII | AGATCT | 1 cut(s) | 2209 |
| BisI | GCNGC | 8 cut(s) | 155, 295, 993, 1428, 1662, 2250, 2307, 2325 |
| BlsI | GCNGC | 8 cut(s) | 156, 296, 994, 1429, 1663, 2251, 2308, 2326 |
| Bme1390I | CCNGG | 3 cut(s) | 162, 209, 926 |
| Bme18I | GGWCC | 3 cut(s) | 596, 961, 2314 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1994 |
| BmgT120I | GGNCC | 3 cut(s) | 596, 961, 2314 |
| BmiI | GGNNCC | 4 cut(s) | 935, 1378, 1833, 2315 |
| BmrFI | CCNGG | 3 cut(s) | 162, 209, 926 |
| BmsI | GCATC | 7 cut(s) | 211, 273, 464, 1772, 1774, 1811, 2160 |
| BpuEI | CTTGAG | 5 cut(s) | 1115, 1193, 1928, 1969, 2027 |
| Bsa29I | ATCGAT | 1 cut(s) | 216 |
| BsaAI | YACGTR | 1 cut(s) | 911 |
| BsaHI | GRCGYC | 2 cut(s) | 111, 1418 |
| BsaJI | CCNNGG | 6 cut(s) | 105, 160, 161, 254, 925, 1300 |
| BsaWI | WCCGGW | 3 cut(s) | 837, 895, 1478 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 38, 68 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 844 |
| Bse1I | ACTGG | 2 cut(s) | 981, 1715 |
| Bse3DI | GCAATG | 2 cut(s) | 287, 1223 |
| BseBI | CCWGG | 3 cut(s) | 162, 209, 926 |
| BseCI | ATCGAT | 1 cut(s) | 216 |
| BseDI | CCNNGG | 6 cut(s) | 105, 160, 161, 254, 925, 1300 |
| BseGI | GGATG | 4 cut(s) | 1063, 1189, 1826, 2292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 844 |
| BseMI | GCAATG | 2 cut(s) | 287, 1223 |
| BseMII | CTCAG | 3 cut(s) | 359, 1382, 2029 |
| BseNI | ACTGG | 2 cut(s) | 981, 1715 |
| BseRI | GAGGAG | 7 cut(s) | 46, 49, 52, 55, 58, 61, 1889 |
| BseXI | GCAGC | 6 cut(s) | 166, 1004, 1414, 1673, 2293, 2311 |
| BsgI | GTGCAG | 1 cut(s) | 1011 |
| Bsh1236I | CGCG | 1 cut(s) | 312 |
| BshFI | GGCC | 1 cut(s) | 2115 |
| BshNI | GGYRCC | 1 cut(s) | 1376 |
| BshVI | ATCGAT | 1 cut(s) | 216 |
| BsiHKAI | GWGCWC | 2 cut(s) | 756, 1863 |
| BsiSI | CCGG | 3 cut(s) | 838, 896, 1479 |
| BslFI | GGGAC | 4 cut(s) | 179, 409, 2327, 2352 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 844 |
| BsmAI | GTCTC | 3 cut(s) | 133, 1904, 2177 |
| BsmBI | CGTCTC | 1 cut(s) | 133 |
| BsmFI | GGGAC | 4 cut(s) | 179, 409, 2327, 2352 |
| BsmI | GAATGC | 1 cut(s) | 1035 |
| BsnI | GGCC | 1 cut(s) | 2115 |
| Bsp1286I | GDGCHC | 2 cut(s) | 756, 1863 |
| Bsp1407I | TGTACA | 2 cut(s) | 1434, 2390 |
| Bsp143I | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| Bsp19I | CCATGG | 1 cut(s) | 254 |
| Bsp68I | TCGCGA | 1 cut(s) | 312 |
| BspACI | CCGC | 8 cut(s) | 81, 102, 186, 295, 575, 1049, 1146, 2250 |
| BspANI | GGCC | 1 cut(s) | 2115 |
| BspCNI | CTCAG | 3 cut(s) | 358, 1383, 2028 |
| BspDI | ATCGAT | 1 cut(s) | 216 |
| BspFNI | CGCG | 1 cut(s) | 312 |
| BspLI | GGNNCC | 4 cut(s) | 935, 1378, 1833, 2315 |
| BspMAI | CTGCAG | 2 cut(s) | 1996, 2311 |
| BspMI | ACCTGC | 1 cut(s) | 1999 |
| BspPI | GGATC | 4 cut(s) | 728, 1916, 2028, 2354 |
| BspT107I | GGYRCC | 1 cut(s) | 1376 |
| BspTI | CTTAAG | 2 cut(s) | 1154, 2272 |
| BsrDI | GCAATG | 2 cut(s) | 287, 1223 |
| BsrGI | TGTACA | 2 cut(s) | 1434, 2390 |
| BsrI | ACTGG | 2 cut(s) | 981, 1715 |
| BssECI | CCNNGG | 6 cut(s) | 105, 160, 161, 254, 925, 1300 |
| BssMI | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| BssNI | GRCGYC | 2 cut(s) | 111, 1418 |
| BssT1I | CCWWGG | 1 cut(s) | 254 |
| Bst2UI | CCWGG | 3 cut(s) | 162, 209, 926 |
| Bst4CI | ACNGT | 4 cut(s) | 183, 989, 1142, 1674 |
| Bst6I | CTCTTC | 6 cut(s) | 79, 427, 576, 1566, 1797, 2132 |
| BstACI | GRCGYC | 2 cut(s) | 111, 1418 |
| BstAFI | CTTAAG | 2 cut(s) | 1154, 2272 |
| BstAUI | TGTACA | 2 cut(s) | 1434, 2390 |
| BstBAI | YACGTR | 1 cut(s) | 911 |
| BstC8I | GCNNGC | 4 cut(s) | 1388, 1815, 2254, 2258 |
| BstDEI | CTNAG | 5 cut(s) | 17, 345, 1391, 1699, 2015 |
| BstDSI | CCRYGG | 1 cut(s) | 254 |
| BstF5I | GGATG | 4 cut(s) | 1063, 1189, 1826, 2292 |
| BstFNI | CGCG | 1 cut(s) | 312 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 8 cut(s) | 723, 1017, 1610, 1809, 1924, 2023, 2212, 2362 |
| BstMAI | GTCTC | 3 cut(s) | 133, 1904, 2177 |
| BstMBI | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 110, 494, 651, 1448, 1661, 2303 |
| BstNI | CCWGG | 3 cut(s) | 162, 209, 926 |
| BstNSI | RCATGY | 3 cut(s) | 379, 1390, 1588 |
| BstSCI | CCNGG | 3 cut(s) | 160, 207, 924 |
| BstSFI | CTRYAG | 4 cut(s) | 1018, 1381, 1992, 2307 |
| BstUI | CGCG | 1 cut(s) | 312 |
| BstV1I | GCAGC | 6 cut(s) | 166, 1004, 1414, 1673, 2293, 2311 |
| BstX2I | RGATCY | 1 cut(s) | 2209 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1932 |
| BstYI | RGATCY | 1 cut(s) | 2209 |
| Bsu15I | ATCGAT | 1 cut(s) | 216 |
| BsuI | GTATCC | 2 cut(s) | 362, 692 |
| BsuRI | GGCC | 1 cut(s) | 2115 |
| BsuTUI | ATCGAT | 1 cut(s) | 216 |
| BtgI | CCRYGG | 1 cut(s) | 254 |
| BtgZI | GCGATG | 1 cut(s) | 296 |
| BtsCI | GGATG | 4 cut(s) | 1063, 1189, 1826, 2292 |
| BtsI | GCAGTG | 1 cut(s) | 2199 |
| BtsIMutI | CAGTG | 4 cut(s) | 988, 1296, 2199, 2393 |
| BtuMI | TCGCGA | 1 cut(s) | 312 |
| BveI | ACCTGC | 1 cut(s) | 1999 |
| Cac8I | GCNNGC | 4 cut(s) | 1388, 1815, 2254, 2258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 987 |
| CfoI | GCGC | 1 cut(s) | 294 |
| Cfr13I | GGNCC | 3 cut(s) | 596, 961, 2314 |
| ClaI | ATCGAT | 1 cut(s) | 216 |
| CseI | GACGC | 2 cut(s) | 119, 1426 |
| Csp6I | GTAC | 5 cut(s) | 192, 1435, 1694, 2031, 2391 |
| CviQI | GTAC | 5 cut(s) | 192, 1435, 1694, 2031, 2391 |
| DdeI | CTNAG | 5 cut(s) | 17, 345, 1391, 1699, 2015 |
| DpnI | GATC | 8 cut(s) | 722, 1016, 1609, 1808, 1923, 2022, 2211, 2361 |
| DpnII | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| DraI | TTTAAA | 3 cut(s) | 919, 976, 1075 |
| DraIII | CACNNNGTG | 1 cut(s) | 827 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1994 |
| Eam1104I | CTCTTC | 6 cut(s) | 79, 427, 576, 1566, 1797, 2132 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1994 |
| EarI | CTCTTC | 6 cut(s) | 79, 427, 576, 1566, 1797, 2132 |
| EciI | GGCGGA | 1 cut(s) | 70 |
| Ecl136II | GAGCTC | 1 cut(s) | 754 |
| Eco130I | CCWWGG | 1 cut(s) | 254 |
| Eco24I | GRGCYC | 1 cut(s) | 756 |
| Eco32I | GATATC | 1 cut(s) | 205 |
| Eco47I | GGWCC | 3 cut(s) | 596, 961, 2314 |
| Eco53kI | GAGCTC | 1 cut(s) | 754 |
| Eco57I | CTGAAG | 1 cut(s) | 1590 |
| EcoICRI | GAGCTC | 1 cut(s) | 754 |
| EcoO109I | RGGNCCY | 1 cut(s) | 961 |
| EcoRI | GAATTC | 2 cut(s) | 1614, 1710 |
| EcoRII | CCWGG | 3 cut(s) | 160, 207, 924 |
| EcoRV | GATATC | 1 cut(s) | 205 |
| EcoT14I | CCWWGG | 1 cut(s) | 254 |
| EcoT22I | ATGCAT | 4 cut(s) | 463, 479, 1657, 1789 |
| EcoT38I | GRGCYC | 1 cut(s) | 756 |
| ErhI | CCWWGG | 1 cut(s) | 254 |
| Esp3I | CGTCTC | 1 cut(s) | 133 |
| FaqI | GGGAC | 4 cut(s) | 179, 409, 2327, 2352 |
| FauI | CCCGC | 2 cut(s) | 109, 582 |
| FauNDI | CATATG | 5 cut(s) | 525, 592, 1120, 1657, 1798 |
| FblI | GTMKAC | 2 cut(s) | 372, 2096 |
| Fnu4HI | GCNGC | 8 cut(s) | 155, 295, 993, 1428, 1662, 2250, 2307, 2325 |
| FokI | GGATG | 4 cut(s) | 1070, 1196, 1833, 2299 |
| FriOI | GRGCYC | 1 cut(s) | 756 |
| Fsp4HI | GCNGC | 8 cut(s) | 155, 295, 993, 1428, 1662, 2250, 2307, 2325 |
| FspBI | CTAG | 6 cut(s) | 150, 392, 489, 1245, 2048, 2117 |
| GlaI | GCGC | 1 cut(s) | 293 |
| GluI | GCNGC | 8 cut(s) | 155, 295, 993, 1428, 1662, 2250, 2307, 2325 |
| HaeIII | GGCC | 1 cut(s) | 2115 |
| HapII | CCGG | 3 cut(s) | 838, 896, 1479 |
| HgaI | GACGC | 2 cut(s) | 119, 1426 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1I | GRCGYC | 2 cut(s) | 111, 1418 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HindIII | AAGCTT | 2 cut(s) | 1127, 2275 |
| HinfI | GANTC | 9 cut(s) | 143, 227, 726, 745, 944, 1529, 2087, 2093, 2384 |
| HpaII | CCGG | 3 cut(s) | 838, 896, 1479 |
| HphI | GGTGA | 5 cut(s) | 90, 885, 1111, 1268, 2146 |
| Hpy166II | GTNNAC | 7 cut(s) | 373, 787, 1151, 1276, 1670, 2097, 2393 |
| Hpy188I | TCNGA | 8 cut(s) | 139, 725, 1195, 1463, 1570, 1783, 1873, 2092 |
| Hpy8I | GTNNAC | 7 cut(s) | 373, 787, 1151, 1276, 1670, 2097, 2393 |
| HpyCH4III | ACNGT | 4 cut(s) | 183, 989, 1142, 1674 |
| HpyCH4IV | ACGT | 2 cut(s) | 910, 2341 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 110, 494, 651, 1448, 1661, 2303 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 345, 1391, 1699, 2015 |
| HpySE526I | ACGT | 2 cut(s) | 910, 2341 |
| Hsp92I | GRCGYC | 2 cut(s) | 111, 1418 |
| HspAI | GCGC | 1 cut(s) | 292 |
| Kzo9I | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| LmnI | GCTCC | 5 cut(s) | 162, 485, 502, 939, 1831 |
| Lsp1109I | GCAGC | 6 cut(s) | 166, 1004, 1414, 1673, 2293, 2311 |
| LweI | GCATC | 7 cut(s) | 211, 273, 464, 1772, 1774, 1811, 2160 |
| MaeI | CTAG | 6 cut(s) | 150, 392, 489, 1245, 2048, 2117 |
| MaeII | ACGT | 2 cut(s) | 910, 2341 |
| MaeIII | GTNAC | 8 cut(s) | 773, 833, 983, 1099, 1259, 1621, 1973, 2197 |
| MalI | GATC | 8 cut(s) | 722, 1016, 1609, 1808, 1923, 2022, 2211, 2361 |
| MboI | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| MfeI | CAATTG | 1 cut(s) | 1775 |
| MflI | RGATCY | 1 cut(s) | 2209 |
| MhlI | GDGCHC | 2 cut(s) | 756, 1863 |
| MlyI | GAGTC | 3 cut(s) | 735, 953, 2102 |
| MmeI | TCCRAC | 1 cut(s) | 493 |
| Mph1103I | ATGCAT | 4 cut(s) | 463, 479, 1657, 1789 |
| MslI | CAYNNNNRTG | 4 cut(s) | 626, 1583, 2167, 2193 |
| MspA1I | CMGCKG | 2 cut(s) | 1427, 2252 |
| MspCI | CTTAAG | 2 cut(s) | 1154, 2272 |
| MspI | CCGG | 3 cut(s) | 838, 896, 1479 |
| MspR9I | CCNGG | 3 cut(s) | 162, 209, 926 |
| MunI | CAATTG | 1 cut(s) | 1775 |
| Mva1269I | GAATGC | 1 cut(s) | 1035 |
| MvaI | CCWGG | 3 cut(s) | 162, 209, 926 |
| MvnI | CGCG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 110, 494, 651, 1448, 1661, 2303 |
| NcoI | CCATGG | 1 cut(s) | 254 |
| NdeI | CATATG | 5 cut(s) | 525, 592, 1120, 1657, 1798 |
| NdeII | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| NlaIV | GGNNCC | 4 cut(s) | 935, 1378, 1833, 2315 |
| NmeAIII | GCCGAG | 3 cut(s) | 130, 680, 1325 |
| NmuCI | GTSAC | 5 cut(s) | 833, 983, 1099, 1259, 2197 |
| NruI | TCGCGA | 1 cut(s) | 312 |
| NsiI | ATGCAT | 4 cut(s) | 463, 479, 1657, 1789 |
| NspI | RCATGY | 3 cut(s) | 379, 1390, 1588 |
| OliI | CACNNNNGTG | 1 cut(s) | 2193 |
| PaeI | GCATGC | 1 cut(s) | 1390 |
| PasI | CCCWGGG | 1 cut(s) | 161 |
| PciI | ACATGT | 2 cut(s) | 375, 1584 |
| PctI | GAATGC | 1 cut(s) | 1035 |
| PfeI | GAWTC | 6 cut(s) | 143, 227, 745, 1529, 2087, 2384 |
| PfoI | TCCNGGA | 1 cut(s) | 207 |
| PkrI | GCNGC | 8 cut(s) | 156, 296, 994, 1429, 1663, 2251, 2308, 2326 |
| PleI | GAGTC | 3 cut(s) | 734, 952, 2101 |
| PpsI | GAGTC | 3 cut(s) | 734, 952, 2101 |
| Ppu21I | YACGTR | 1 cut(s) | 911 |
| PpuMI | RGGWCCY | 1 cut(s) | 961 |
| PscI | ACATGT | 2 cut(s) | 375, 1584 |
| PsiI | TTATAA | 1 cut(s) | 1847 |
| Psp124BI | GAGCTC | 1 cut(s) | 756 |
| Psp5II | RGGWCCY | 1 cut(s) | 961 |
| Psp6I | CCWGG | 3 cut(s) | 160, 207, 924 |
| PspGI | CCWGG | 3 cut(s) | 160, 207, 924 |
| PspN4I | GGNNCC | 4 cut(s) | 935, 1378, 1833, 2315 |
| PspPI | GGNCC | 3 cut(s) | 596, 961, 2314 |
| PspPPI | RGGWCCY | 1 cut(s) | 961 |
| PstI | CTGCAG | 2 cut(s) | 1996, 2311 |
| PstNI | CAGNNNCTG | 1 cut(s) | 987 |
| PsuI | RGATCY | 1 cut(s) | 2209 |
| PvuII | CAGCTG | 1 cut(s) | 1427 |
| RruI | TCGCGA | 1 cut(s) | 312 |
| RsaI | GTAC | 5 cut(s) | 193, 1436, 1695, 2032, 2392 |
| RsaNI | GTAC | 5 cut(s) | 192, 1435, 1694, 2031, 2391 |
| RseI | CAYNNNNRTG | 4 cut(s) | 626, 1583, 2167, 2193 |
| SacI | GAGCTC | 1 cut(s) | 756 |
| SalI | GTCGAC | 1 cut(s) | 371 |
| SatI | GCNGC | 8 cut(s) | 155, 295, 993, 1428, 1662, 2250, 2307, 2325 |
| Sau3AI | GATC | 8 cut(s) | 720, 1014, 1607, 1806, 1921, 2020, 2209, 2359 |
| Sau96I | GGNCC | 3 cut(s) | 596, 961, 2314 |
| SchI | GAGTC | 3 cut(s) | 735, 953, 2102 |
| ScrFI | CCNGG | 3 cut(s) | 162, 209, 926 |
| SduI | GDGCHC | 2 cut(s) | 756, 1863 |
| SfaNI | GCATC | 7 cut(s) | 211, 273, 464, 1772, 1774, 1811, 2160 |
| SfcI | CTRYAG | 4 cut(s) | 1018, 1381, 1992, 2307 |
| SinI | GGWCC | 3 cut(s) | 596, 961, 2314 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 626, 1583, 2167, 2193 |
| SmlI | CTYRAG | 7 cut(s) | 1094, 1154, 1172, 1907, 1948, 2006, 2272 |
| SmoI | CTYRAG | 7 cut(s) | 1094, 1154, 1172, 1907, 1948, 2006, 2272 |
| SphI | GCATGC | 1 cut(s) | 1390 |
| SsiI | CCGC | 8 cut(s) | 81, 102, 186, 295, 575, 1049, 1146, 2250 |
| SspMI | CTAG | 6 cut(s) | 150, 392, 489, 1245, 2048, 2117 |
| SstI | GAGCTC | 1 cut(s) | 756 |
| StyD4I | CCNGG | 3 cut(s) | 160, 207, 924 |
| StyI | CCWWGG | 1 cut(s) | 254 |
| TaaI | ACNGT | 4 cut(s) | 183, 989, 1142, 1674 |
| TaiI | ACGT | 2 cut(s) | 913, 2344 |
| TaqI | TCGA | 6 cut(s) | 146, 216, 372, 1214, 1857, 2175 |
| TaqII | GACCGA | 2 cut(s) | 2331, 2361 |
| TatI | WGTACW | 3 cut(s) | 1434, 2030, 2390 |
| TauI | GCSGC | 2 cut(s) | 297, 2252 |
| TfiI | GAWTC | 6 cut(s) | 143, 227, 745, 1529, 2087, 2384 |
| TscAI | CASTG | 4 cut(s) | 988, 1296, 2206, 2400 |
| TseFI | GTSAC | 5 cut(s) | 833, 983, 1099, 1259, 2197 |
| TseI | GCWGC | 6 cut(s) | 154, 992, 1427, 1661, 2306, 2324 |
| Tsp45I | GTSAC | 5 cut(s) | 833, 983, 1099, 1259, 2197 |
| TspGWI | ACGGA | 1 cut(s) | 344 |
| TspRI | CASTG | 4 cut(s) | 988, 1296, 2206, 2400 |
| Vha464I | CTTAAG | 2 cut(s) | 1154, 2272 |
| VpaK11BI | GGWCC | 3 cut(s) | 596, 961, 2314 |
| XbaI | TCTAGA | 1 cut(s) | 2047 |
| XceI | RCATGY | 3 cut(s) | 379, 1390, 1588 |
| XmiI | GTMKAC | 2 cut(s) | 372, 2096 |
| XspI | CTAG | 6 cut(s) | 150, 392, 489, 1245, 2048, 2117 |
| Zsp2I | ATGCAT | 4 cut(s) | 463, 479, 1657, 1789 |