Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 212 |
| Acc36I | ACCTGC | 1 cut(s) | 364 |
| AccI | GTMKAC | 1 cut(s) | 461 |
| AciI | CCGC | 1 cut(s) | 615 |
| AclWI | GGATC | 3 cut(s) | 281, 393, 719 |
| AcsI | RAATTY | 2 cut(s) | 75, 711 |
| AfaI | GTAC | 3 cut(s) | 60, 397, 757 |
| AflII | CTTAAG | 1 cut(s) | 637 |
| AgsI | TTSAA | 3 cut(s) | 94, 233, 749 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 359 |
| AluBI | AGCT | 6 cut(s) | 90, 182, 206, 410, 511, 642 |
| AluI | AGCT | 6 cut(s) | 90, 182, 206, 410, 511, 642 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| Alw26I | GTCTC | 2 cut(s) | 269, 542 |
| AlwI | GGATC | 3 cut(s) | 281, 393, 719 |
| AoxI | GGCC | 2 cut(s) | 478, 514 |
| ApeKI | GCWGC | 2 cut(s) | 671, 689 |
| ApoI | RAATTY | 2 cut(s) | 75, 711 |
| AspS9I | GGNCC | 1 cut(s) | 679 |
| AsuHPI | GGTGA | 1 cut(s) | 511 |
| AvaII | GGWCC | 1 cut(s) | 679 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvI | GCAGC | 2 cut(s) | 658, 676 |
| BccI | CCATC | 1 cut(s) | 299 |
| BceAI | ACGGC | 1 cut(s) | 344 |
| BcoDI | GTCTC | 2 cut(s) | 269, 542 |
| BfaI | CTAG | 2 cut(s) | 413, 482 |
| BfmI | CTRYAG | 1 cut(s) | 672 |
| BfrI | CTTAAG | 1 cut(s) | 637 |
| BfuAI | ACCTGC | 1 cut(s) | 364 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 668 |
| BglII | AGATCT | 1 cut(s) | 574 |
| BisI | GCNGC | 3 cut(s) | 615, 672, 690 |
| BlsI | GCNGC | 3 cut(s) | 616, 673, 691 |
| Bme18I | GGWCC | 1 cut(s) | 679 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 1 cut(s) | 679 |
| BmiI | GGNNCC | 2 cut(s) | 198, 680 |
| BmsI | GCATC | 3 cut(s) | 137, 139, 176 |
| BpuEI | CTTGAG | 3 cut(s) | 293, 334, 392 |
| Bse1I | ACTGG | 1 cut(s) | 80 |
| BseGI | GGATG | 2 cut(s) | 191, 657 |
| BseMII | CTCAG | 1 cut(s) | 394 |
| BseNI | ACTGG | 1 cut(s) | 80 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseXI | GCAGC | 2 cut(s) | 658, 676 |
| BshFI | GGCC | 2 cut(s) | 480, 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BslFI | GGGAC | 2 cut(s) | 692, 717 |
| BsmAI | GTCTC | 2 cut(s) | 269, 542 |
| BsmFI | GGGAC | 2 cut(s) | 692, 717 |
| BsnI | GGCC | 2 cut(s) | 480, 516 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp1407I | TGTACA | 1 cut(s) | 755 |
| Bsp143I | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| BspACI | CCGC | 1 cut(s) | 615 |
| BspANI | GGCC | 2 cut(s) | 480, 516 |
| BspCNI | CTCAG | 1 cut(s) | 393 |
| BspLI | GGNNCC | 2 cut(s) | 198, 680 |
| BspMAI | CTGCAG | 1 cut(s) | 676 |
| BspMI | ACCTGC | 1 cut(s) | 364 |
| BspPI | GGATC | 3 cut(s) | 281, 393, 719 |
| BspTI | CTTAAG | 1 cut(s) | 637 |
| BsrGI | TGTACA | 1 cut(s) | 755 |
| BsrI | ACTGG | 1 cut(s) | 80 |
| BssMI | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| Bst6I | CTCTTC | 2 cut(s) | 162, 497 |
| BstAFI | CTTAAG | 1 cut(s) | 637 |
| BstAUI | TGTACA | 1 cut(s) | 755 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 619, 623 |
| BstDEI | CTNAG | 3 cut(s) | 50, 64, 380 |
| BstF5I | GGATG | 2 cut(s) | 191, 657 |
| BstKTI | GATC | 5 cut(s) | 174, 289, 388, 577, 727 |
| BstMAI | GTCTC | 2 cut(s) | 269, 542 |
| BstMBI | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 668 |
| BstSFI | CTRYAG | 1 cut(s) | 672 |
| BstV1I | GCAGC | 2 cut(s) | 658, 676 |
| BstX2I | RGATCY | 1 cut(s) | 574 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 297 |
| BstYI | RGATCY | 1 cut(s) | 574 |
| BsuRI | GGCC | 2 cut(s) | 480, 516 |
| BtsCI | GGATG | 2 cut(s) | 191, 657 |
| BtsI | GCAGTG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 3 cut(s) | 44, 564, 758 |
| BveI | ACCTGC | 1 cut(s) | 364 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 619, 623 |
| Cfr13I | GGNCC | 1 cut(s) | 679 |
| Csp6I | GTAC | 3 cut(s) | 59, 396, 756 |
| CviAII | CATG | 5 cut(s) | 134, 494, 554, 731, 753 |
| CviQI | GTAC | 3 cut(s) | 59, 396, 756 |
| DdeI | CTNAG | 3 cut(s) | 50, 64, 380 |
| DpnI | GATC | 5 cut(s) | 173, 288, 387, 576, 726 |
| DpnII | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| DriI | GACNNNNNGTC | 1 cut(s) | 359 |
| Eam1104I | CTCTTC | 2 cut(s) | 162, 497 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 359 |
| EarI | CTCTTC | 2 cut(s) | 162, 497 |
| Eco47I | GGWCC | 1 cut(s) | 679 |
| EcoRI | GAATTC | 1 cut(s) | 75 |
| EcoT22I | ATGCAT | 1 cut(s) | 154 |
| FaeI | CATG | 5 cut(s) | 137, 497, 557, 734, 756 |
| FaqI | GGGAC | 2 cut(s) | 692, 717 |
| FatI | CATG | 5 cut(s) | 133, 493, 553, 730, 752 |
| FauNDI | CATATG | 1 cut(s) | 163 |
| FblI | GTMKAC | 1 cut(s) | 461 |
| Fnu4HI | GCNGC | 3 cut(s) | 615, 672, 690 |
| FokI | GGATG | 2 cut(s) | 198, 664 |
| Fsp4HI | GCNGC | 3 cut(s) | 615, 672, 690 |
| FspBI | CTAG | 2 cut(s) | 413, 482 |
| GluI | GCNGC | 3 cut(s) | 615, 672, 690 |
| HaeIII | GGCC | 2 cut(s) | 480, 516 |
| Hin1II | CATG | 5 cut(s) | 137, 497, 557, 734, 756 |
| HindIII | AAGCTT | 1 cut(s) | 640 |
| HinfI | GANTC | 3 cut(s) | 452, 458, 749 |
| HphI | GGTGA | 1 cut(s) | 511 |
| Hpy166II | GTNNAC | 2 cut(s) | 462, 758 |
| Hpy188I | TCNGA | 3 cut(s) | 148, 238, 457 |
| Hpy188III | TCNNGA | 3 cut(s) | 413, 528, 539 |
| Hpy8I | GTNNAC | 2 cut(s) | 462, 758 |
| HpyAV | CCTTC | 4 cut(s) | 239, 451, 534, 772 |
| HpyCH4IV | ACGT | 1 cut(s) | 706 |
| HpyCH4V | TGCA | 7 cut(s) | 42, 128, 152, 189, 580, 674, 692 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 668 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 64, 380 |
| HpySE526I | ACGT | 1 cut(s) | 706 |
| Hsp92II | CATG | 5 cut(s) | 137, 497, 557, 734, 756 |
| Kzo9I | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| LpnPI | CCDG | 8 cut(s) | 34, 93, 168, 367, 369, 374, 603, 660 |
| Lsp1109I | GCAGC | 2 cut(s) | 658, 676 |
| LweI | GCATC | 3 cut(s) | 137, 139, 176 |
| MaeI | CTAG | 2 cut(s) | 413, 482 |
| MaeII | ACGT | 1 cut(s) | 706 |
| MaeIII | GTNAC | 3 cut(s) | 16, 338, 562 |
| MalI | GATC | 5 cut(s) | 173, 288, 387, 576, 726 |
| MboI | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| MboII | GAAGA | 6 cut(s) | 179, 254, 514, 539, 787, 794 |
| MfeI | CAATTG | 1 cut(s) | 140 |
| MflI | RGATCY | 1 cut(s) | 574 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MluCI | AATT | 6 cut(s) | 75, 140, 364, 404, 420, 711 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| MnlI | CCTC | 3 cut(s) | 275, 527, 738 |
| Mph1103I | ATGCAT | 1 cut(s) | 154 |
| MseI | TTAA | 6 cut(s) | 102, 156, 251, 350, 638, 647 |
| MslI | CAYNNNNRTG | 2 cut(s) | 532, 558 |
| MspA1I | CMGCKG | 1 cut(s) | 617 |
| MspCI | CTTAAG | 1 cut(s) | 637 |
| MunI | CAATTG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 668 |
| NdeI | CATATG | 1 cut(s) | 163 |
| NdeII | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| NlaIII | CATG | 5 cut(s) | 137, 497, 557, 734, 756 |
| NlaIV | GGNNCC | 2 cut(s) | 198, 680 |
| NmuCI | GTSAC | 1 cut(s) | 562 |
| NsiI | ATGCAT | 1 cut(s) | 154 |
| PfeI | GAWTC | 2 cut(s) | 452, 749 |
| PkrI | GCNGC | 3 cut(s) | 616, 673, 691 |
| PleI | GAGTC | 1 cut(s) | 466 |
| PpsI | GAGTC | 1 cut(s) | 466 |
| PsiI | TTATAA | 1 cut(s) | 212 |
| PspN4I | GGNNCC | 2 cut(s) | 198, 680 |
| PspPI | GGNCC | 1 cut(s) | 679 |
| PstI | CTGCAG | 1 cut(s) | 676 |
| PsuI | RGATCY | 1 cut(s) | 574 |
| RsaI | GTAC | 3 cut(s) | 60, 397, 757 |
| RsaNI | GTAC | 3 cut(s) | 59, 396, 756 |
| RseI | CAYNNNNRTG | 2 cut(s) | 532, 558 |
| SaqAI | TTAA | 6 cut(s) | 102, 156, 251, 350, 638, 647 |
| SatI | GCNGC | 3 cut(s) | 615, 672, 690 |
| Sau3AI | GATC | 5 cut(s) | 171, 286, 385, 574, 724 |
| Sau96I | GGNCC | 1 cut(s) | 679 |
| SchI | GAGTC | 1 cut(s) | 467 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SfaNI | GCATC | 3 cut(s) | 137, 139, 176 |
| SfcI | CTRYAG | 1 cut(s) | 672 |
| SinI | GGWCC | 1 cut(s) | 679 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 532, 558 |
| SmlI | CTYRAG | 4 cut(s) | 272, 313, 371, 637 |
| SmoI | CTYRAG | 4 cut(s) | 272, 313, 371, 637 |
| Sse9I | AATT | 6 cut(s) | 75, 140, 364, 404, 420, 711 |
| SsiI | CCGC | 1 cut(s) | 615 |
| SspMI | CTAG | 2 cut(s) | 413, 482 |
| TaiI | ACGT | 1 cut(s) | 709 |
| TaqI | TCGA | 2 cut(s) | 222, 540 |
| TaqII | GACCGA | 2 cut(s) | 696, 726 |
| TasI | AATT | 6 cut(s) | 75, 140, 364, 404, 420, 711 |
| TatI | WGTACW | 2 cut(s) | 395, 755 |
| TauI | GCSGC | 1 cut(s) | 617 |
| TfiI | GAWTC | 2 cut(s) | 452, 749 |
| Tru1I | TTAA | 6 cut(s) | 102, 156, 251, 350, 638, 647 |
| Tru9I | TTAA | 6 cut(s) | 102, 156, 251, 350, 638, 647 |
| TscAI | CASTG | 3 cut(s) | 44, 571, 765 |
| TseFI | GTSAC | 1 cut(s) | 562 |
| TseI | GCWGC | 2 cut(s) | 671, 689 |
| Tsp45I | GTSAC | 1 cut(s) | 562 |
| TspDTI | ATGAA | 5 cut(s) | 180, 255, 433, 482, 515 |
| TspRI | CASTG | 3 cut(s) | 44, 571, 765 |
| Vha464I | CTTAAG | 1 cut(s) | 637 |
| VpaK11BI | GGWCC | 1 cut(s) | 679 |
| XapI | RAATTY | 2 cut(s) | 75, 711 |
| XbaI | TCTAGA | 1 cut(s) | 412 |
| XmiI | GTMKAC | 1 cut(s) | 461 |
| XspI | CTAG | 2 cut(s) | 413, 482 |
| Zsp2I | ATGCAT | 1 cut(s) | 154 |