Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 561 - 723 | 2.8e-12 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 634 - 749 | 3.5e-06 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 649 - 707 | 3.5e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 660 - 707 | 2.8e-10 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2405 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 272 |
| Acc36I | ACCTGC | 1 cut(s) | 2557 |
| AccB1I | GGYRCC | 1 cut(s) | 1934 |
| AccBSI | CCGCTC | 1 cut(s) | 497 |
| AccI | GTMKAC | 3 cut(s) | 141, 930, 2654 |
| AccII | CGCG | 1 cut(s) | 870 |
| AclWI | GGATC | 4 cut(s) | 1286, 2474, 2586, 2912 |
| AcoI | YGGCCR | 2 cut(s) | 205, 451 |
| AcuI | CTGAAG | 3 cut(s) | 93, 354, 2148 |
| AcyI | GRCGYC | 2 cut(s) | 669, 1976 |
| AdeI | CACNNNGTG | 1 cut(s) | 1385 |
| AfaI | GTAC | 7 cut(s) | 25, 225, 751, 1994, 2253, 2590, 2950 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1402 |
| AflII | CTTAAG | 2 cut(s) | 1712, 2830 |
| AflIII | ACRYGT | 2 cut(s) | 933, 2142 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2552 |
| AjnI | CCWGG | 3 cut(s) | 292, 765, 1482 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2177, 2209 |
| AleI | CACNNNNGTG | 1 cut(s) | 2751 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1113, 1145 |
| Alw21I | GWGCWC | 2 cut(s) | 1314, 2421 |
| Alw26I | GTCTC | 3 cut(s) | 691, 2462, 2735 |
| AlwI | GGATC | 4 cut(s) | 1286, 2474, 2586, 2912 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1545 |
| AoxI | GGCC | 6 cut(s) | 35, 205, 290, 451, 2671, 2707 |
| AspLEI | GCGC | 2 cut(s) | 549, 852 |
| AspS9I | GGNCC | 6 cut(s) | 36, 185, 290, 1154, 1519, 2872 |
| AsuHPI | GGTGA | 6 cut(s) | 648, 1443, 1669, 1750, 1826, 2704 |
| AvaII | GGWCC | 4 cut(s) | 185, 1154, 1519, 2872 |
| BalI | TGGCCA | 2 cut(s) | 207, 453 |
| BanI | GGYRCC | 1 cut(s) | 1934 |
| BanII | GRGCYC | 1 cut(s) | 1314 |
| BauI | CACGAG | 1 cut(s) | 209 |
| Bbv12I | GWGCWC | 2 cut(s) | 1314, 2421 |
| BccI | CCATC | 8 cut(s) | 197, 476, 478, 614, 1331, 1768, 2112, 2492 |
| BceAI | ACGGC | 1 cut(s) | 2537 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 829, 863, 920, 954 |
| BciT130I | CCWGG | 3 cut(s) | 294, 767, 1484 |
| BciVI | GTATCC | 2 cut(s) | 920, 1250 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BcoDI | GTCTC | 3 cut(s) | 691, 2462, 2735 |
| BfaI | CTAG | 6 cut(s) | 708, 950, 1047, 1803, 2606, 2675 |
| BfmI | CTRYAG | 5 cut(s) | 193, 408, 1576, 1939, 2865 |
| BfrI | CTTAAG | 2 cut(s) | 1712, 2830 |
| BfuAI | ACCTGC | 1 cut(s) | 2557 |
| BfuI | GTATCC | 2 cut(s) | 920, 1250 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 167, 2861 |
| BglII | AGATCT | 2 cut(s) | 126, 2767 |
| BlpI | GCTNAGC | 2 cut(s) | 584, 601 |
| Bme1390I | CCNGG | 3 cut(s) | 294, 767, 1484 |
| Bme18I | GGWCC | 4 cut(s) | 185, 1154, 1519, 2872 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2552 |
| BmgT120I | GGNCC | 6 cut(s) | 36, 185, 290, 1154, 1519, 2872 |
| BmiI | GGNNCC | 7 cut(s) | 38, 187, 350, 1493, 1936, 2391, 2873 |
| BmrFI | CCNGG | 3 cut(s) | 294, 767, 1484 |
| BmsI | GCATC | 7 cut(s) | 185, 769, 831, 1022, 2330, 2332, 2369 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 584, 601 |
| BpuEI | CTTGAG | 5 cut(s) | 1673, 1751, 2486, 2527, 2585 |
| Bsa29I | ATCGAT | 1 cut(s) | 774 |
| BsaAI | YACGTR | 1 cut(s) | 1469 |
| BsaBI | GATNNNNATC | 1 cut(s) | 469 |
| BsaHI | GRCGYC | 2 cut(s) | 669, 1976 |
| BsaJI | CCNNGG | 5 cut(s) | 245, 663, 812, 1483, 1858 |
| BsaWI | WCCGGW | 3 cut(s) | 1395, 1453, 2036 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 605, 635 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1402 |
| Bse1I | ACTGG | 2 cut(s) | 1539, 2273 |
| Bse3DI | GCAATG | 1 cut(s) | 845 |
| Bse8I | GATNNNNATC | 1 cut(s) | 469 |
| BseBI | CCWGG | 3 cut(s) | 294, 767, 1484 |
| BseCI | ATCGAT | 1 cut(s) | 774 |
| BseDI | CCNNGG | 5 cut(s) | 245, 663, 812, 1483, 1858 |
| BseGI | GGATG | 3 cut(s) | 1621, 2384, 2850 |
| BseJI | GATNNNNATC | 1 cut(s) | 469 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1402 |
| BseMI | GCAATG | 1 cut(s) | 845 |
| BseMII | CTCAG | 4 cut(s) | 615, 917, 1940, 2587 |
| BseNI | ACTGG | 2 cut(s) | 1539, 2273 |
| BseRI | GAGGAG | 4 cut(s) | 613, 616, 619, 2447 |
| BsgI | GTGCAG | 2 cut(s) | 77, 1569 |
| Bsh1236I | CGCG | 1 cut(s) | 870 |
| BshFI | GGCC | 6 cut(s) | 37, 207, 292, 453, 2673, 2709 |
| BshNI | GGYRCC | 1 cut(s) | 1934 |
| BshVI | ATCGAT | 1 cut(s) | 774 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1314, 2421 |
| BsiSI | CCGG | 3 cut(s) | 1396, 1454, 2037 |
| BslFI | GGGAC | 4 cut(s) | 737, 967, 2885, 2910 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1402 |
| BsmAI | GTCTC | 3 cut(s) | 691, 2462, 2735 |
| BsmBI | CGTCTC | 1 cut(s) | 691 |
| BsmFI | GGGAC | 4 cut(s) | 737, 967, 2885, 2910 |
| BsmI | GAATGC | 2 cut(s) | 334, 1593 |
| BsnI | GGCC | 6 cut(s) | 37, 207, 292, 453, 2673, 2709 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1314, 2421 |
| Bsp1407I | TGTACA | 2 cut(s) | 1992, 2948 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 584, 601 |
| Bsp19I | CCATGG | 1 cut(s) | 812 |
| Bsp68I | TCGCGA | 1 cut(s) | 870 |
| BspANI | GGCC | 6 cut(s) | 37, 207, 292, 453, 2673, 2709 |
| BspCNI | CTCAG | 4 cut(s) | 614, 916, 1941, 2586 |
| BspDI | ATCGAT | 1 cut(s) | 774 |
| BspFNI | CGCG | 1 cut(s) | 870 |
| BspLI | GGNNCC | 7 cut(s) | 38, 187, 350, 1493, 1936, 2391, 2873 |
| BspMAI | CTGCAG | 2 cut(s) | 412, 2869 |
| BspMI | ACCTGC | 1 cut(s) | 2557 |
| BspPI | GGATC | 4 cut(s) | 1286, 2474, 2586, 2912 |
| BspT107I | GGYRCC | 1 cut(s) | 1934 |
| BspTI | CTTAAG | 2 cut(s) | 1712, 2830 |
| BsrBI | CCGCTC | 1 cut(s) | 497 |
| BsrDI | GCAATG | 1 cut(s) | 845 |
| BsrGI | TGTACA | 2 cut(s) | 1992, 2948 |
| BsrI | ACTGG | 2 cut(s) | 1539, 2273 |
| BssECI | CCNNGG | 5 cut(s) | 245, 663, 812, 1483, 1858 |
| BssNI | GRCGYC | 2 cut(s) | 669, 1976 |
| BssSI | CACGAG | 1 cut(s) | 209 |
| BssT1I | CCWWGG | 1 cut(s) | 812 |
| Bst2BI | CACGAG | 1 cut(s) | 209 |
| Bst2UI | CCWGG | 3 cut(s) | 294, 767, 1484 |
| Bst4CI | ACNGT | 6 cut(s) | 197, 741, 1547, 1700, 2232, 2953 |
| Bst6I | CTCTTC | 6 cut(s) | 637, 985, 1134, 2124, 2355, 2690 |
| BstACI | GRCGYC | 2 cut(s) | 669, 1976 |
| BstAFI | CTTAAG | 2 cut(s) | 1712, 2830 |
| BstAUI | TGTACA | 2 cut(s) | 1992, 2948 |
| BstBAI | YACGTR | 1 cut(s) | 1469 |
| BstC8I | GCNNGC | 4 cut(s) | 1946, 2373, 2812, 2816 |
| BstDEI | CTNAG | 6 cut(s) | 584, 601, 903, 1420, 1949, 2573 |
| BstDSI | CCRYGG | 1 cut(s) | 812 |
| BstF5I | GGATG | 3 cut(s) | 1621, 2384, 2850 |
| BstFNI | CGCG | 1 cut(s) | 870 |
| BstHHI | GCGC | 2 cut(s) | 549, 852 |
| BstMAI | GTCTC | 3 cut(s) | 691, 2462, 2735 |
| BstNI | CCWGG | 3 cut(s) | 294, 767, 1484 |
| BstNSI | RCATGY | 4 cut(s) | 937, 1724, 1948, 2146 |
| BstSCI | CCNGG | 3 cut(s) | 292, 765, 1482 |
| BstSFI | CTRYAG | 5 cut(s) | 193, 408, 1576, 1939, 2865 |
| BstUI | CGCG | 1 cut(s) | 870 |
| BstX2I | RGATCY | 2 cut(s) | 126, 2767 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 100, 2490 |
| BstYI | RGATCY | 2 cut(s) | 126, 2767 |
| Bsu15I | ATCGAT | 1 cut(s) | 774 |
| BsuI | GTATCC | 2 cut(s) | 920, 1250 |
| BsuRI | GGCC | 6 cut(s) | 37, 207, 292, 453, 2673, 2709 |
| BsuTUI | ATCGAT | 1 cut(s) | 774 |
| BtgI | CCRYGG | 1 cut(s) | 812 |
| BtgZI | GCGATG | 1 cut(s) | 854 |
| BtsCI | GGATG | 3 cut(s) | 1621, 2384, 2850 |
| BtsI | GCAGTG | 2 cut(s) | 26, 2757 |
| BtsIMutI | CAGTG | 5 cut(s) | 26, 1546, 1854, 2757, 2958 |
| BtuMI | TCGCGA | 1 cut(s) | 870 |
| BveI | ACCTGC | 1 cut(s) | 2557 |
| Cac8I | GCNNGC | 4 cut(s) | 1946, 2373, 2812, 2816 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1545 |
| CfoI | GCGC | 2 cut(s) | 549, 852 |
| Cfr13I | GGNCC | 6 cut(s) | 36, 185, 290, 1154, 1519, 2872 |
| ClaI | ATCGAT | 1 cut(s) | 774 |
| CseI | GACGC | 2 cut(s) | 677, 1984 |
| Csp6I | GTAC | 7 cut(s) | 24, 224, 750, 1993, 2252, 2589, 2949 |
| CviQI | GTAC | 7 cut(s) | 24, 224, 750, 1993, 2252, 2589, 2949 |
| DdeI | CTNAG | 6 cut(s) | 584, 601, 903, 1420, 1949, 2573 |
| DraI | TTTAAA | 3 cut(s) | 1477, 1534, 1633 |
| DraIII | CACNNNGTG | 1 cut(s) | 1385 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 272 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2552 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 272 |
| EaeI | YGGCCR | 2 cut(s) | 205, 451 |
| Eam1104I | CTCTTC | 6 cut(s) | 637, 985, 1134, 2124, 2355, 2690 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2552 |
| EarI | CTCTTC | 6 cut(s) | 637, 985, 1134, 2124, 2355, 2690 |
| EciI | GGCGGA | 1 cut(s) | 628 |
| Ecl136II | GAGCTC | 1 cut(s) | 1312 |
| Eco130I | CCWWGG | 1 cut(s) | 812 |
| Eco24I | GRGCYC | 1 cut(s) | 1314 |
| Eco32I | GATATC | 2 cut(s) | 467, 763 |
| Eco47I | GGWCC | 4 cut(s) | 185, 1154, 1519, 2872 |
| Eco53kI | GAGCTC | 1 cut(s) | 1312 |
| Eco57I | CTGAAG | 3 cut(s) | 93, 354, 2148 |
| EcoICRI | GAGCTC | 1 cut(s) | 1312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1519 |
| EcoRI | GAATTC | 2 cut(s) | 2172, 2268 |
| EcoRII | CCWGG | 3 cut(s) | 292, 765, 1482 |
| EcoRV | GATATC | 2 cut(s) | 467, 763 |
| EcoT14I | CCWWGG | 1 cut(s) | 812 |
| EcoT22I | ATGCAT | 4 cut(s) | 1021, 1037, 2215, 2347 |
| EcoT38I | GRGCYC | 1 cut(s) | 1314 |
| ErhI | CCWWGG | 1 cut(s) | 812 |
| Esp3I | CGTCTC | 1 cut(s) | 691 |
| FaqI | GGGAC | 4 cut(s) | 737, 967, 2885, 2910 |
| FauI | CCCGC | 3 cut(s) | 502, 667, 1140 |
| FauNDI | CATATG | 5 cut(s) | 1083, 1150, 1678, 2215, 2356 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| FblI | GTMKAC | 3 cut(s) | 141, 930, 2654 |
| FokI | GGATG | 3 cut(s) | 1628, 2391, 2857 |
| FriOI | GRGCYC | 1 cut(s) | 1314 |
| FspBI | CTAG | 6 cut(s) | 708, 950, 1047, 1803, 2606, 2675 |
| GlaI | GCGC | 2 cut(s) | 548, 851 |
| HaeIII | GGCC | 6 cut(s) | 37, 207, 292, 453, 2673, 2709 |
| HapII | CCGG | 3 cut(s) | 1396, 1454, 2037 |
| HgaI | GACGC | 2 cut(s) | 677, 1984 |
| HhaI | GCGC | 2 cut(s) | 549, 852 |
| Hin1I | GRCGYC | 2 cut(s) | 669, 1976 |
| Hin6I | GCGC | 2 cut(s) | 547, 850 |
| HinP1I | GCGC | 2 cut(s) | 547, 850 |
| HincII | GTYRAC | 2 cut(s) | 284, 931 |
| HindII | GTYRAC | 2 cut(s) | 284, 931 |
| HindIII | AAGCTT | 2 cut(s) | 1685, 2833 |
| HpaII | CCGG | 3 cut(s) | 1396, 1454, 2037 |
| HphI | GGTGA | 6 cut(s) | 648, 1443, 1669, 1750, 1826, 2704 |
| Hpy166II | GTNNAC | 9 cut(s) | 26, 142, 284, 931, 1345, 1709, 1834, 2228, 2655 |
| Hpy8I | GTNNAC | 9 cut(s) | 26, 142, 284, 931, 1345, 1709, 1834, 2228, 2655 |
| HpyCH4III | ACNGT | 6 cut(s) | 197, 741, 1547, 1700, 2232, 2953 |
| HpyCH4IV | ACGT | 2 cut(s) | 1468, 2899 |
| HpyF3I | CTNAG | 6 cut(s) | 584, 601, 903, 1420, 1949, 2573 |
| HpySE526I | ACGT | 2 cut(s) | 1468, 2899 |
| Hsp92I | GRCGYC | 2 cut(s) | 669, 1976 |
| HspAI | GCGC | 2 cut(s) | 547, 850 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| LmnI | GCTCC | 5 cut(s) | 485, 1043, 1060, 1497, 2389 |
| LweI | GCATC | 7 cut(s) | 185, 769, 831, 1022, 2330, 2332, 2369 |
| MaeI | CTAG | 6 cut(s) | 708, 950, 1047, 1803, 2606, 2675 |
| MaeII | ACGT | 2 cut(s) | 1468, 2899 |
| MaeIII | GTNAC | 9 cut(s) | 1331, 1391, 1541, 1657, 1817, 2179, 2531, 2755, 2953 |
| MbiI | CCGCTC | 1 cut(s) | 497 |
| MfeI | CAATTG | 2 cut(s) | 510, 2333 |
| MflI | RGATCY | 2 cut(s) | 126, 2767 |
| MhlI | GDGCHC | 2 cut(s) | 1314, 2421 |
| MlsI | TGGCCA | 2 cut(s) | 207, 453 |
| MluNI | TGGCCA | 2 cut(s) | 207, 453 |
| MlyI | GAGTC | 3 cut(s) | 1293, 1511, 2660 |
| MmeI | TCCRAC | 1 cut(s) | 1051 |
| Mox20I | TGGCCA | 2 cut(s) | 207, 453 |
| Mph1103I | ATGCAT | 4 cut(s) | 1021, 1037, 2215, 2347 |
| MscI | TGGCCA | 2 cut(s) | 207, 453 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1184, 2141, 2725, 2751 |
| Msp20I | TGGCCA | 2 cut(s) | 207, 453 |
| MspA1I | CMGCKG | 4 cut(s) | 64, 317, 1985, 2810 |
| MspCI | CTTAAG | 2 cut(s) | 1712, 2830 |
| MspI | CCGG | 3 cut(s) | 1396, 1454, 2037 |
| MspR9I | CCNGG | 3 cut(s) | 294, 767, 1484 |
| MunI | CAATTG | 2 cut(s) | 510, 2333 |
| Mva1269I | GAATGC | 2 cut(s) | 334, 1593 |
| MvaI | CCWGG | 3 cut(s) | 294, 767, 1484 |
| MvnI | CGCG | 1 cut(s) | 870 |
| NcoI | CCATGG | 1 cut(s) | 812 |
| NdeI | CATATG | 5 cut(s) | 1083, 1150, 1678, 2215, 2356 |
| NlaIV | GGNNCC | 7 cut(s) | 38, 187, 350, 1493, 1936, 2391, 2873 |
| NmeAIII | GCCGAG | 3 cut(s) | 688, 1238, 1883 |
| NmuCI | GTSAC | 6 cut(s) | 1391, 1541, 1657, 1817, 2755, 2953 |
| NruI | TCGCGA | 1 cut(s) | 870 |
| NsiI | ATGCAT | 4 cut(s) | 1021, 1037, 2215, 2347 |
| NspI | RCATGY | 4 cut(s) | 937, 1724, 1948, 2146 |
| OliI | CACNNNNGTG | 1 cut(s) | 2751 |
| PaeI | GCATGC | 1 cut(s) | 1948 |
| PciI | ACATGT | 2 cut(s) | 933, 2142 |
| PctI | GAATGC | 2 cut(s) | 334, 1593 |
| PfeI | GAWTC | 7 cut(s) | 96, 701, 785, 1303, 2087, 2645, 2942 |
| PfoI | TCCNGGA | 1 cut(s) | 765 |
| PleI | GAGTC | 3 cut(s) | 1292, 1510, 2659 |
| PpsI | GAGTC | 3 cut(s) | 1292, 1510, 2659 |
| Ppu21I | YACGTR | 1 cut(s) | 1469 |
| PpuMI | RGGWCCY | 1 cut(s) | 1519 |
| PscI | ACATGT | 2 cut(s) | 933, 2142 |
| PsiI | TTATAA | 1 cut(s) | 2405 |
| Psp124BI | GAGCTC | 1 cut(s) | 1314 |
| Psp5II | RGGWCCY | 1 cut(s) | 1519 |
| Psp6I | CCWGG | 3 cut(s) | 292, 765, 1482 |
| PspGI | CCWGG | 3 cut(s) | 292, 765, 1482 |
| PspN4I | GGNNCC | 7 cut(s) | 38, 187, 350, 1493, 1936, 2391, 2873 |
| PspPI | GGNCC | 6 cut(s) | 36, 185, 290, 1154, 1519, 2872 |
| PspPPI | RGGWCCY | 1 cut(s) | 1519 |
| PstI | CTGCAG | 2 cut(s) | 412, 2869 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1545 |
| PsuI | RGATCY | 2 cut(s) | 126, 2767 |
| PvuII | CAGCTG | 1 cut(s) | 1985 |
| RruI | TCGCGA | 1 cut(s) | 870 |
| RsaI | GTAC | 7 cut(s) | 25, 225, 751, 1994, 2253, 2590, 2950 |
| RsaNI | GTAC | 7 cut(s) | 24, 224, 750, 1993, 2252, 2589, 2949 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1184, 2141, 2725, 2751 |
| SacI | GAGCTC | 1 cut(s) | 1314 |
| SalI | GTCGAC | 1 cut(s) | 929 |
| Sau96I | GGNCC | 6 cut(s) | 36, 185, 290, 1154, 1519, 2872 |
| SchI | GAGTC | 3 cut(s) | 1293, 1511, 2660 |
| ScrFI | CCNGG | 3 cut(s) | 294, 767, 1484 |
| SduI | GDGCHC | 2 cut(s) | 1314, 2421 |
| SfaNI | GCATC | 7 cut(s) | 185, 769, 831, 1022, 2330, 2332, 2369 |
| SfcI | CTRYAG | 5 cut(s) | 193, 408, 1576, 1939, 2865 |
| SinI | GGWCC | 4 cut(s) | 185, 1154, 1519, 2872 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1184, 2141, 2725, 2751 |
| SmlI | CTYRAG | 7 cut(s) | 1652, 1712, 1730, 2465, 2506, 2564, 2830 |
| SmoI | CTYRAG | 7 cut(s) | 1652, 1712, 1730, 2465, 2506, 2564, 2830 |
| SphI | GCATGC | 1 cut(s) | 1948 |
| SspMI | CTAG | 6 cut(s) | 708, 950, 1047, 1803, 2606, 2675 |
| SstI | GAGCTC | 1 cut(s) | 1314 |
| StyD4I | CCNGG | 3 cut(s) | 292, 765, 1482 |
| StyI | CCWWGG | 1 cut(s) | 812 |
| TaaI | ACNGT | 6 cut(s) | 197, 741, 1547, 1700, 2232, 2953 |
| TaiI | ACGT | 2 cut(s) | 1471, 2902 |
| TaqI | TCGA | 8 cut(s) | 51, 704, 774, 930, 1176, 1772, 2415, 2733 |
| TaqII | GACCGA | 2 cut(s) | 2889, 2919 |
| TatI | WGTACW | 3 cut(s) | 1992, 2588, 2948 |
| TauI | GCSGC | 3 cut(s) | 67, 855, 2810 |
| TfiI | GAWTC | 7 cut(s) | 96, 701, 785, 1303, 2087, 2645, 2942 |
| TscAI | CASTG | 5 cut(s) | 33, 1546, 1854, 2764, 2958 |
| TseFI | GTSAC | 6 cut(s) | 1391, 1541, 1657, 1817, 2755, 2953 |
| Tsp45I | GTSAC | 6 cut(s) | 1391, 1541, 1657, 1817, 2755, 2953 |
| TspGWI | ACGGA | 2 cut(s) | 902, 1146 |
| TspRI | CASTG | 5 cut(s) | 33, 1546, 1854, 2764, 2958 |
| Vha464I | CTTAAG | 2 cut(s) | 1712, 2830 |
| VpaK11BI | GGWCC | 4 cut(s) | 185, 1154, 1519, 2872 |
| XbaI | TCTAGA | 1 cut(s) | 2605 |
| XceI | RCATGY | 4 cut(s) | 937, 1724, 1948, 2146 |
| XmiI | GTMKAC | 3 cut(s) | 141, 930, 2654 |
| XspI | CTAG | 6 cut(s) | 708, 950, 1047, 1803, 2606, 2675 |
| Zsp2I | ATGCAT | 4 cut(s) | 1021, 1037, 2215, 2347 |