AT4G23660

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001284
Physical Location & Seq
Reverse (-)
12327638 .. 12331876
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23660.1

Sequence Viewer

Length: 1224 bp
ATGGCGTTTTTTGGGCTCTCCCGTGTTTCAAGACGGTTGTTGAAATCTTCCGTCTCCGTAACTCCATCTTCTTCCTCTGCTCTTTTGCAATCACAACATAAATCCTTGTCCAATCCTGTGACTACCCATTACACAAATCCTTTCACTAAGTGTTATCCTTCATGGAATGATAATTACCAAGTATGGAGTAAAGGAAGAGAATTGCATCAGGAGAAGTTTTTTGGTGTTGGTTGGAATTACAGATTAATTTGTGGAATGTCGTCGTCTTCTTCGGTTTTGGAGGGAAAGCCGAAGAAAGATGATAAGGAGAAGAGTGATGGTGTTGTTGTTAAGGAAGCTTCTTGGATAGATTTGTATTTACCAGAAGAAGTTAGAGGTTATGCTAAGCTTGCTCGATTGGATAAACCCATTGGAACTTGGTTGCTTGCGTGGCCTTGTATGTGGTCGATTGCGTTGGCTGCTGATCCTGGAAGCCTTCCAAGTTTTAAATATATGGCTTTATTTGGTTGCGGAGCATTACTTCTTAGAGGTGCTGGTTGTACTATAAATGATCTGCTTGATCAGGACATAGATACAAAGGTTGATCGTACAAAACTAAGACCTATCGCCAGTGGTCTTTTGACACCATTTCAAGGGATTGGATTTCTCGGGCTGCAGTTGCTTTTAGGCTTAGGGATTCTTCTCCAACTTAACAATTACAGCCGTGTTTTAGGGGCTTCATCTTTGTTACTTGTCTTTTCCTACCCACTTATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTTTAGGTTTGACCATAAACTGGGGAGCATTGTTAGGATGGACTGCAGTTAAAGGAAGCATAGCACCATCTATTGTACTCCCTCTCTATCTCTCCGGAGTCTGCTGGACCCTTGTTTATGATACTATTTATGCACATCAGGACAAAGAAGATGATGTAAAAGTTGGTGTTAAGTCAACAGCCCTTAGATTCGGTGATAATACAAAGCTTTGGTTAACTGGATTTGGCACAGCATCCATAGGTTTTCTTGCACTTTCTGGATTCAGTGCAGATCTCGGGTGGCAATATTACGCATCACTGGCCGCTGCATCAGGACAGTTAGGATGGCAAATAGGGACAGCTGACTTATCATCTGGTGCTGACTGCAGTAGAAAATTTGTGTCGAACAAGTGGTTTGGTGCTATTATATTTAGTGGAGTTGTACTTGGAAGAAGTTTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

407

Amino Acids

44.6

Weight (kDa)

9.23

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 143 - 388 9.7e-58 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 801
AccIII TCCGGA 1 cut(s) 875
AciI CCGC 2 cut(s) 510, 1083
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 1080
AcsI RAATTY 1 cut(s) 1154
AdeI CACNNNGTG 1 cut(s) 150
AfaI GTAC 4 cut(s) 541, 589, 858, 1203
AfiI CCNNNNNNNGG 2 cut(s) 632, 801
AgsI TTSAA 4 cut(s) 30, 43, 632, 1220
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 4 cut(s) 338, 388, 988, 1121
AluI AGCT 4 cut(s) 338, 388, 988, 1121
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 458
Ama87I CYCGRG 2 cut(s) 647, 1055
Aor13HI TCCGGA 1 cut(s) 875
AoxI GGCC 3 cut(s) 431, 770, 1080
ApeKI GCWGC 3 cut(s) 458, 652, 1085
ApoI RAATTY 1 cut(s) 1154
AseI ATTAAT 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 888
AsuHPI GGTGA 1 cut(s) 986
AvaI CYCGRG 2 cut(s) 647, 1055
AvaII GGWCC 1 cut(s) 888
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 445, 639, 1072
BccI CCATC 5 cut(s) 73, 311, 813, 856, 1098
BceAI ACGGC 1 cut(s) 687
BciT130I CCWGG 1 cut(s) 468
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 3 cut(s) 653, 825, 1144
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 4 cut(s) 459, 653, 1083, 1086
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 4 cut(s) 460, 654, 1084, 1087
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 888
BmeT110I CYCGRG 2 cut(s) 647, 1055
BmgT120I GGNCC 1 cut(s) 888
BmiI GGNNCC 1 cut(s) 890
BmrFI CCNGG 1 cut(s) 468
BmrI ACTGGG 1 cut(s) 811
BmsI GCATC 4 cut(s) 214, 1022, 1082, 1097
BmuI ACTGGG 1 cut(s) 811
BpiI GAAGAC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 670
Bpu1102I GCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 759
BsaWI WCCGGW 1 cut(s) 875
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 801
Bse1I ACTGG 4 cut(s) 609, 806, 1003, 1083
BseAI TCCGGA 1 cut(s) 875
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 3 cut(s) 824, 1013, 1109
BseLI CCNNNNNNNGG 2 cut(s) 632, 801
BseNI ACTGG 4 cut(s) 609, 806, 1003, 1083
BseXI GCAGC 3 cut(s) 445, 639, 1072
BsgI GTGCAG 1 cut(s) 1068
BshFI GGCC 3 cut(s) 433, 772, 1082
BsiHKCI CYCGRG 2 cut(s) 647, 1055
BsiSI CCGG 1 cut(s) 876
BslFI GGGAC 1 cut(s) 1129
BslI CCNNNNNNNGG 2 cut(s) 632, 801
BsmAI GTCTC 1 cut(s) 58
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 1129
BsnI GGCC 3 cut(s) 433, 772, 1082
BsoBI CYCGRG 2 cut(s) 647, 1055
Bsp1286I GDGCHC 1 cut(s) 18
Bsp13I TCCGGA 1 cut(s) 875
Bsp143I GATC 5 cut(s) 463, 550, 559, 583, 1051
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 2 cut(s) 510, 1083
BspANI GGCC 3 cut(s) 433, 772, 1082
BspEI TCCGGA 1 cut(s) 875
BspLI GGNNCC 1 cut(s) 890
BspMAI CTGCAG 3 cut(s) 657, 829, 1148
BspPI GGATC 1 cut(s) 458
BsrI ACTGG 4 cut(s) 609, 806, 1003, 1083
BssMI GATC 5 cut(s) 463, 550, 559, 583, 1051
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 2 cut(s) 36, 1098
Bst6I CTCTTC 3 cut(s) 190, 305, 749
BstC8I GCNNGC 2 cut(s) 390, 426
BstDEI CTNAG 6 cut(s) 147, 384, 524, 596, 670, 965
BstF5I GGATG 3 cut(s) 824, 1013, 1109
BstKTI GATC 5 cut(s) 466, 553, 562, 586, 1054
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 5 cut(s) 463, 550, 559, 583, 1051
BstMWI GCNNNNNNNGC 5 cut(s) 389, 430, 458, 658, 1079
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 3 cut(s) 653, 825, 1144
BstV1I GCAGC 3 cut(s) 445, 639, 1072
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 1051
BstYI RGATCY 1 cut(s) 1051
BsuRI GGCC 3 cut(s) 433, 772, 1082
BtsCI GGATG 3 cut(s) 824, 1013, 1109
BtsIMutI CAGTG 3 cut(s) 616, 1051, 1076
Cac8I GCNNGC 2 cut(s) 390, 426
Cfr13I GGNCC 1 cut(s) 888
Csp6I GTAC 4 cut(s) 540, 588, 857, 1202
CviAII CATG 1 cut(s) 162
CviQI GTAC 4 cut(s) 540, 588, 857, 1202
DdeI CTNAG 6 cut(s) 147, 384, 524, 596, 670, 965
DpnI GATC 5 cut(s) 465, 552, 561, 585, 1053
DpnII GATC 5 cut(s) 463, 550, 559, 583, 1051
DraI TTTAAA 1 cut(s) 487
DraIII CACNNNGTG 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 1080
Eam1104I CTCTTC 3 cut(s) 190, 305, 749
EarI CTCTTC 3 cut(s) 190, 305, 749
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 888
Eco88I CYCGRG 2 cut(s) 647, 1055
EcoRII CCWGG 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 165
FaqI GGGAC 1 cut(s) 1129
FatI CATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 459, 653, 1083, 1086
FokI GGATG 3 cut(s) 831, 1000, 1116
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 4 cut(s) 459, 653, 1083, 1086
GluI GCNGC 4 cut(s) 459, 653, 1083, 1086
HaeIII GGCC 3 cut(s) 433, 772, 1082
HapII CCGG 1 cut(s) 876
Hin1II CATG 1 cut(s) 165
HincII GTYRAC 2 cut(s) 957, 996
HindII GTYRAC 2 cut(s) 957, 996
HindIII AAGCTT 3 cut(s) 336, 386, 986
HinfI GANTC 4 cut(s) 676, 879, 969, 1041
HpaI GTTAAC 1 cut(s) 996
HpaII CCGG 1 cut(s) 876
HphI GGTGA 1 cut(s) 986
Hpy166II GTNNAC 3 cut(s) 762, 957, 996
Hpy188III TCNNGA 7 cut(s) 30, 209, 563, 876, 920, 1038, 1092
Hpy8I GTNNAC 3 cut(s) 762, 957, 996
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 168, 485
HpyCH4III ACNGT 2 cut(s) 36, 1098
HpyCH4V TGCA 9 cut(s) 88, 205, 655, 827, 914, 1031, 1049, 1088, 1146
HpyF10VI GCNNNNNNNGC 5 cut(s) 389, 430, 458, 658, 1079
HpyF3I CTNAG 6 cut(s) 147, 384, 524, 596, 670, 965
Hsp92II CATG 1 cut(s) 165
Kpn2I TCCGGA 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 996
Kzo9I GATC 5 cut(s) 463, 550, 559, 583, 1051
LmnI GCTCC 2 cut(s) 512, 806
Lsp1109I GCAGC 3 cut(s) 445, 639, 1072
LweI GCATC 4 cut(s) 214, 1022, 1082, 1097
MaeIII GTNAC 3 cut(s) 58, 118, 726
MalI GATC 5 cut(s) 465, 552, 561, 585, 1053
MboI GATC 5 cut(s) 463, 550, 559, 583, 1051
MflI RGATCY 1 cut(s) 1051
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 6 cut(s) 172, 200, 235, 246, 694, 1154
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 2 cut(s) 212, 709
MnlI CCTC 7 cut(s) 85, 274, 368, 521, 750, 783, 873
MroI TCCGGA 1 cut(s) 875
MseI TTAA 7 cut(s) 245, 330, 486, 690, 831, 951, 995
MspA1I CMGCKG 2 cut(s) 1085, 1121
MspI CCGG 1 cut(s) 876
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 5 cut(s) 389, 430, 458, 658, 1079
NdeII GATC 5 cut(s) 463, 550, 559, 583, 1051
NlaIII CATG 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 890
NmuCI GTSAC 1 cut(s) 118
PfeI GAWTC 3 cut(s) 676, 969, 1041
PflMI CCANNNNNTGG 1 cut(s) 801
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 4 cut(s) 460, 654, 1084, 1087
PleI GAGTC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 887
PshBI ATTAAT 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 890
PspPI GGNCC 1 cut(s) 888
PstI CTGCAG 3 cut(s) 657, 829, 1148
PsuI RGATCY 1 cut(s) 1051
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 4 cut(s) 541, 589, 858, 1203
RsaNI GTAC 4 cut(s) 540, 588, 857, 1202
SaqAI TTAA 7 cut(s) 245, 330, 486, 690, 831, 951, 995
SatI GCNGC 4 cut(s) 459, 653, 1083, 1086
Sau3AI GATC 5 cut(s) 463, 550, 559, 583, 1051
Sau96I GGNCC 1 cut(s) 888
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 4 cut(s) 214, 1022, 1082, 1097
SfcI CTRYAG 3 cut(s) 653, 825, 1144
SinI GGWCC 1 cut(s) 888
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
Sse9I AATT 6 cut(s) 172, 200, 235, 246, 694, 1154
SsiI CCGC 2 cut(s) 510, 1083
SspI AATATT 1 cut(s) 1067
StyD4I CCNGG 1 cut(s) 466
TaaI ACNGT 2 cut(s) 36, 1098
TaqI TCGA 3 cut(s) 394, 446, 1163
TasI AATT 6 cut(s) 172, 200, 235, 246, 694, 1154
TatI WGTACW 3 cut(s) 539, 856, 1201
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 3 cut(s) 676, 969, 1041
Tru1I TTAA 7 cut(s) 245, 330, 486, 690, 831, 951, 995
Tru9I TTAA 7 cut(s) 245, 330, 486, 690, 831, 951, 995
TscAI CASTG 3 cut(s) 616, 1051, 1083
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 3 cut(s) 458, 652, 1085
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 150, 708, 767
TspGWI ACGGA 2 cut(s) 40, 46
TspRI CASTG 3 cut(s) 616, 1051, 1083
Van91I CCANNNNNTGG 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 888
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 1 cut(s) 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.