FvH4_4g36840

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001284
Physical Location & Seq
Reverse (-)
33578074 .. 33581318
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36840.t6

Sequence Viewer

Length: 1152 bp
ATGACGCCGTTTCGGGTGTTGTCTCGGGCATCGCGTCGGCTCCCGAAGCCTTCGCTCCCTCGCTCCCATCTCTCCGCCGTCTCTACCTATCAGCCAACCGCCAAACCGAATTACCCTAATACCCCTTTGATCCCATTCGATCACAAGCACCGTTGGATTCCCAGTTATCTGGATTCTGATCTCAGGTTCGTAGCGCACTTATCGGGCTCGTCTTCATCGAACAAGGACGAGAATCATCGGGTCGGGGATGACCCGAAACCTGAAGCATCTTGGATCGATGTGTATTTGCCCAGGCAGGCCCGCCCTTATGCGAAGCTCGCTCGTCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTCAATAACATTGGCAGCAAGCCCGGGTTATCTTCCGGATATTAAGATGTTGACATTGTTTGGATGTGGGGCTTTGCTTCTAAGGGGTGCCGGATGTACCGTGAATGATCTCCTCGATCGCGATATTGACACTATGGTTGAACGTACAAAGTTGCGGCCAGTTGCAAGTGGTCTCGTGACACCTTTTGAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTGGGTCTTGGAATTCTACTTCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCCCTCATGAAGAGGTTCACATTCTGGCCTCAAGCATACCTAGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAGTTAAAGGAAGCATTGATCCAGCCATAGTACTTCCATTGTACATATCTGGAGTATTTTGGACACTTGTGTATGATACAATATATGCACATCAGGATAAAGAAGACGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTGCTGGGTTTGGAATCCTGTGCATCTGTAGTCTTGCCCTCAGTGGATATAATGCCGAAATTGGCTGGCCATATTATGCACTTTTGGCGGCTGCATCTGGACAATTAGCTTGGCAAATATGGACAGTTGACCTTTCATCCCGGATTGATTGCAATAGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGGAATCTTATTGGGAAGACTTTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

384

Amino Acids

42.57

Weight (kDa)

9.18

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 13 - 210 1.1e-47 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 341, 458
AccII CGCG 2 cut(s) 34, 492
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 6 cut(s) 75, 99, 301, 526, 888, 1010
AclWI GGATC 3 cut(s) 124, 281, 767
AcoI YGGCCR 2 cut(s) 527, 989
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 2 cut(s) 282, 887
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 469, 517, 786, 797
AfiI CCNNNNNNNGG 4 cut(s) 560, 637, 729, 894
AgsI TTSAA 5 cut(s) 512, 560, 584, 614, 909
AjnI CCWGG 2 cut(s) 290, 344
AluBI AGCT 3 cut(s) 316, 737, 1031
AluI AGCT 3 cut(s) 316, 737, 1031
Alw26I GTCTC 4 cut(s) 27, 85, 329, 548
AlwI GGATC 3 cut(s) 124, 281, 767
Ama87I CYCGRG 2 cut(s) 24, 394
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 5 cut(s) 297, 359, 527, 698, 989
ApeKI GCWGC 3 cut(s) 386, 752, 1013
ApoI RAATTY 1 cut(s) 603
Asp700I GAANNNNTTC 2 cut(s) 686, 1141
AspA2I CCTAGG 1 cut(s) 712
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 3 cut(s) 395, 396, 1063
AsuHPI GGTGA 1 cut(s) 914
AvaI CYCGRG 2 cut(s) 24, 394
AvrII CCTAGG 1 cut(s) 712
BalI TGGCCA 1 cut(s) 991
BanI GGYRCC 2 cut(s) 341, 458
BanII GRGCYC 1 cut(s) 209
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 3 cut(s) 204, 864, 1144
BbvI GCAGC 3 cut(s) 398, 739, 1000
BccI CCATC 2 cut(s) 75, 741
BceAI ACGGC 2 cut(s) 62, 615
BciT130I CCWGG 2 cut(s) 292, 346
BcnI CCSGG 3 cut(s) 395, 396, 1063
BcoDI GTCTC 4 cut(s) 27, 85, 329, 548
BfaI CTAG 2 cut(s) 659, 713
BfmI CTRYAG 2 cut(s) 753, 949
BisI GCNGC 5 cut(s) 387, 527, 753, 1011, 1014
BlnI CCTAGG 1 cut(s) 712
BlsI GCNGC 5 cut(s) 388, 528, 754, 1012, 1015
BmcAI AGTACT 1 cut(s) 786
Bme1390I CCNGG 5 cut(s) 292, 346, 395, 396, 1063
BmeT110I CYCGRG 2 cut(s) 24, 394
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 3 cut(s) 41, 343, 460
BmrFI CCNGG 5 cut(s) 292, 346, 395, 396, 1063
BmrI ACTGGG 2 cut(s) 156, 739
BmsI GCATC 4 cut(s) 38, 275, 954, 1025
BmuI ACTGGG 2 cut(s) 156, 739
BpiI GAAGAC 3 cut(s) 204, 864, 1144
BpmI CTGGAG 1 cut(s) 825
BpuEI CTTGAG 1 cut(s) 687
BpuMI CCSGG 3 cut(s) 395, 396, 1063
Bsa29I ATCGAT 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 290, 394, 712
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 4 cut(s) 560, 637, 729, 894
Bse1I ACTGG 3 cut(s) 162, 530, 734
Bse8I GATNNNNATC 1 cut(s) 177
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 2 cut(s) 292, 346
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 290, 394, 712
BseGI GGATG 5 cut(s) 253, 440, 470, 752, 1058
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 4 cut(s) 560, 637, 729, 894
BseMII CTCAG 2 cut(s) 196, 976
BseNI ACTGG 3 cut(s) 162, 530, 734
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 3 cut(s) 398, 739, 1000
BseYI CCCAGC 1 cut(s) 926
Bsh1236I CGCG 2 cut(s) 34, 492
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 5 cut(s) 299, 361, 529, 700, 991
BshNI GGYRCC 2 cut(s) 341, 458
BshVI ATCGAT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 24, 394
BsiSI CCGG 4 cut(s) 395, 407, 462, 1063
BslI CCNNNNNNNGG 4 cut(s) 560, 637, 729, 894
BsmAI GTCTC 4 cut(s) 27, 85, 329, 548
BsmBI CGTCTC 2 cut(s) 85, 329
BsnI GGCC 5 cut(s) 299, 361, 529, 700, 991
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 2 cut(s) 24, 394
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 6 cut(s) 75, 99, 301, 526, 888, 1010
BspANI GGCC 5 cut(s) 299, 361, 529, 700, 991
BspCNI CTCAG 2 cut(s) 195, 975
BspDI ATCGAT 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 2 cut(s) 34, 492
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 3 cut(s) 41, 343, 460
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 3 cut(s) 124, 281, 767
BspT107I GGYRCC 2 cut(s) 341, 458
BspTNI GGTCTC 1 cut(s) 548
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 3 cut(s) 162, 530, 734
BssECI CCNNGG 3 cut(s) 290, 394, 712
BssMI GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 712
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 292, 346
Bst4CI ACNGT 3 cut(s) 152, 472, 1048
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 795
BstC8I GCNNGC 6 cut(s) 297, 301, 318, 354, 391, 989
BstDEI CTNAG 3 cut(s) 182, 452, 962
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 5 cut(s) 253, 440, 470, 752, 1058
BstFNI CGCG 2 cut(s) 34, 492
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 8 cut(s) 132, 142, 181, 276, 481, 490, 775, 865
BstMAI GTCTC 4 cut(s) 27, 85, 329, 548
BstMBI GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
BstMCI CGRYCG 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 46, 317, 358, 1007
BstNI CCWGG 2 cut(s) 292, 346
BstSCI CCNGG 5 cut(s) 290, 344, 393, 394, 1061
BstSFI CTRYAG 2 cut(s) 753, 949
BstUI CGCG 2 cut(s) 34, 492
BstV1I GCAGC 3 cut(s) 398, 739, 1000
BstV2I GAAGAC 3 cut(s) 204, 864, 1144
BstXI CCANNNNNNTGG 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 5 cut(s) 299, 361, 529, 700, 991
BsuTUI ATCGAT 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 15
BtsCI GGATG 5 cut(s) 253, 440, 470, 752, 1058
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 2 cut(s) 970, 1126
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 6 cut(s) 297, 301, 318, 354, 391, 989
CciI TCATGA 1 cut(s) 678
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 298
Cfr9I CCCGGG 1 cut(s) 394
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 2 cut(s) 13, 23
CsiI ACCWGGT 1 cut(s) 344
Csp6I GTAC 4 cut(s) 468, 516, 785, 796
CviAII CATG 1 cut(s) 679
CviQI GTAC 4 cut(s) 468, 516, 785, 796
DdeI CTNAG 3 cut(s) 182, 452, 962
DpnI GATC 8 cut(s) 131, 141, 180, 275, 480, 489, 774, 864
DpnII GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
EaeI YGGCCR 2 cut(s) 527, 989
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 712
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 548
Eco57I CTGAAG 2 cut(s) 282, 887
Eco88I CYCGRG 2 cut(s) 24, 394
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 290, 344
EcoT14I CCWWGG 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 712
Esp3I CGTCTC 2 cut(s) 85, 329
FaeI CATG 1 cut(s) 682
FatI CATG 1 cut(s) 678
FauI CCCGC 1 cut(s) 308
Fnu4HI GCNGC 5 cut(s) 387, 527, 753, 1011, 1014
FokI GGATG 5 cut(s) 260, 447, 477, 759, 1045
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 387, 527, 753, 1011, 1014
FspBI CTAG 2 cut(s) 659, 713
GlaI GCGC 1 cut(s) 195
GluI GCNGC 5 cut(s) 387, 527, 753, 1011, 1014
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 5 cut(s) 299, 361, 529, 700, 991
HapII CCGG 4 cut(s) 395, 407, 462, 1063
HgaI GACGC 2 cut(s) 13, 23
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 682
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 2 cut(s) 423, 1051
HindII GTYRAC 2 cut(s) 423, 1051
HinfI GANTC 6 cut(s) 157, 173, 232, 905, 936, 1125
HpaII CCGG 4 cut(s) 395, 407, 462, 1063
HphI GGTGA 1 cut(s) 914
Hpy166II GTNNAC 3 cut(s) 423, 690, 1051
Hpy188I TCNGA 3 cut(s) 178, 578, 867
Hpy8I GTNNAC 3 cut(s) 423, 690, 1051
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 3 cut(s) 60, 554, 862
HpyCH4III ACNGT 3 cut(s) 152, 472, 1048
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 8 cut(s) 536, 755, 842, 945, 1001, 1016, 1074, 1119
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 317, 358, 1007
HpyF3I CTNAG 3 cut(s) 182, 452, 962
HpySE526I ACGT 1 cut(s) 514
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 682
HspAI GCGC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 406
Kzo9I GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
LmnI GCTCC 4 cut(s) 45, 60, 68, 734
Lsp1109I GCAGC 3 cut(s) 398, 739, 1000
LweI GCATC 4 cut(s) 38, 275, 954, 1025
MabI ACCWGGT 1 cut(s) 344
MaeI CTAG 2 cut(s) 659, 713
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 1 cut(s) 547
MalI GATC 8 cut(s) 131, 141, 180, 275, 480, 489, 774, 864
MboI GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
MboII GAAGA 5 cut(s) 204, 395, 694, 869, 1149
MfeI CAATTG 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 991
MluCI AATT 6 cut(s) 109, 584, 603, 622, 981, 1025
MluNI TGGCCA 1 cut(s) 991
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 7 cut(s) 69, 494, 678, 686, 711, 888, 971
Mox20I TGGCCA 1 cut(s) 991
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 2 cut(s) 686, 1141
MscI TGGCCA 1 cut(s) 991
MseI TTAA 3 cut(s) 414, 726, 759
Msp20I TGGCCA 1 cut(s) 991
MspI CCGG 4 cut(s) 395, 407, 462, 1063
MspR9I CCNGG 5 cut(s) 292, 346, 395, 396, 1063
MunI CAATTG 1 cut(s) 584
MvaI CCWGG 2 cut(s) 292, 346
MvnI CGCG 2 cut(s) 34, 492
MwoI GCNNNNNNNGC 4 cut(s) 46, 317, 358, 1007
NciI CCSGG 3 cut(s) 395, 396, 1063
NdeII GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
NlaIII CATG 1 cut(s) 682
NlaIV GGNNCC 3 cut(s) 41, 343, 460
NmuCI GTSAC 1 cut(s) 547
NruI TCGCGA 1 cut(s) 492
PagI TCATGA 1 cut(s) 678
PcsI WCGNNNNNNNCGW 3 cut(s) 31, 215, 324
PdmI GAANNNNTTC 2 cut(s) 686, 1141
PfeI GAWTC 6 cut(s) 157, 173, 232, 905, 936, 1125
PfoI TCCNGGA 1 cut(s) 1061
PkrI GCNGC 5 cut(s) 388, 528, 754, 1012, 1015
Ple19I CGATCG 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 290, 344
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 290, 344
PspN4I GGNNCC 3 cut(s) 41, 343, 460
PspPI GGNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 757
PvuI CGATCG 1 cut(s) 490
RruI TCGCGA 1 cut(s) 492
RsaI GTAC 4 cut(s) 469, 517, 786, 797
RsaNI GTAC 4 cut(s) 468, 516, 785, 796
SaqAI TTAA 3 cut(s) 414, 726, 759
SatI GCNGC 5 cut(s) 387, 527, 753, 1011, 1014
Sau3AI GATC 8 cut(s) 129, 139, 178, 273, 478, 487, 772, 862
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 786
ScrFI CCNGG 5 cut(s) 292, 346, 395, 396, 1063
SduI GDGCHC 1 cut(s) 209
SexAI ACCWGGT 1 cut(s) 344
SfaNI GCATC 4 cut(s) 38, 275, 954, 1025
SfcI CTRYAG 2 cut(s) 753, 949
SmaI CCCGGG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
Sse9I AATT 6 cut(s) 109, 584, 603, 622, 981, 1025
SsiI CCGC 6 cut(s) 75, 99, 301, 526, 888, 1010
SspMI CTAG 2 cut(s) 659, 713
StyD4I CCNGG 5 cut(s) 290, 344, 393, 394, 1061
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 152, 472, 1048
TaiI ACGT 1 cut(s) 517
TaqI TCGA 6 cut(s) 138, 218, 276, 327, 486, 1091
TasI AATT 6 cut(s) 109, 584, 603, 622, 981, 1025
TatI WGTACW 2 cut(s) 784, 795
TauI GCSGC 2 cut(s) 529, 1013
TfiI GAWTC 6 cut(s) 157, 173, 232, 905, 936, 1125
Tru1I TTAA 3 cut(s) 414, 726, 759
Tru9I TTAA 3 cut(s) 414, 726, 759
TscAI CASTG 2 cut(s) 970, 1126
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 3 cut(s) 386, 752, 1013
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 4 cut(s) 204, 695, 1047, 1134
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 2 cut(s) 970, 1126
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 1 cut(s) 603
XmaI CCCGGG 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 712
XmnI GAANNNNTTC 2 cut(s) 686, 1141
XspI CTAG 2 cut(s) 659, 713
ZrmI AGTACT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.