Rh5AG301200

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001284
Physical Location & Seq
Reverse (-)
42329167 .. 42332720
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG301200.1

Sequence Viewer

Length: 1038 bp
ATGACGTCGTTTCGGCTCTTGTCTCGGGCATCGCGTAGGCTTCTGAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCAGTCTCTACCTATCACCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATCCCTTTTAATCTCAGGCACCGTTGGATTCCCAGTCATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCCACTTCATCGAACAAGGACGACAACCGAGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCCAGGCAGGCCCGCCCTTATGCTAAGCTCGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGCATGTGGTCAATAACATTGGCAGCAACCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGCGCTGGATGTACCGTAAATGATCTCCTTGATCGGGATATTGACACCATGGTGGAACGTACAAAGTTGCGGCCAGTTGCGAGTGGTGTTTTGACACCTTTTAAAGGGTTGTGTTTTCTTGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCCCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTAGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATTAAAGGAAGCATTGATCCAGCTATAATAGTTCCGTTGTACATTTCTGGAGTATTTTGGACACTTGTGTATGATACGATATATGCGCATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCCCTCAGTGGATATAATGCCGAAATTGGTTTTCCCATCCTTTCTTTCTTTTCATTTCTATTTTCTCTTATATATAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

345

Amino Acids

38.41

Weight (kDa)

9.47

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 118 - 339 2.1e-53 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AatII GACGTC 1 cut(s) 8
Acc16I TGCGCA 1 cut(s) 840
AccB1I GGYRCC 2 cut(s) 153, 338
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 298, 523, 885
AclWI GGATC 2 cut(s) 278, 764
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 2 cut(s) 65, 884
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 466, 514, 794
AfiI CCNNNNNNNGG 5 cut(s) 487, 557, 634, 726, 891
AgsI TTSAA 2 cut(s) 581, 906
AjnI CCWGG 3 cut(s) 287, 341, 391
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 4 cut(s) 263, 313, 734, 776
AluI AGCT 4 cut(s) 263, 313, 734, 776
Alw26I GTCTC 2 cut(s) 27, 91
AlwI GGATC 2 cut(s) 278, 764
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 4 cut(s) 294, 356, 524, 695
ApeKI GCWGC 3 cut(s) 80, 383, 749
ApoI RAATTY 1 cut(s) 600
AspA2I CCTAGG 1 cut(s) 709
AspLEI GCGC 3 cut(s) 202, 458, 841
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 89, 911
AvaI CYCGRG 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 709
BanI GGYRCC 2 cut(s) 153, 338
BbvI GCAGC 3 cut(s) 67, 395, 736
BccI CCATC 3 cut(s) 78, 738, 998
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 3 cut(s) 289, 343, 393
BcoDI GTCTC 2 cut(s) 27, 91
BfaI CTAG 2 cut(s) 656, 710
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 459
BisI GCNGC 4 cut(s) 81, 384, 524, 750
BlnI CCTAGG 1 cut(s) 709
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 4 cut(s) 82, 385, 525, 751
Bme1390I CCNGG 3 cut(s) 289, 343, 393
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 155, 340
BmrFI CCNGG 3 cut(s) 289, 343, 393
BmrI ACTGGG 3 cut(s) 162, 736, 933
BmsI GCATC 3 cut(s) 38, 850, 951
BmuI ACTGGG 3 cut(s) 162, 736, 933
BpmI CTGGAG 1 cut(s) 822
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 287, 391, 501, 709
Bsc4I CCNNNNNNNGG 5 cut(s) 487, 557, 634, 726, 891
Bse1I ACTGG 4 cut(s) 168, 527, 731, 928
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 3 cut(s) 289, 343, 393
BseDI CCNNGG 4 cut(s) 287, 391, 501, 709
BseGI GGATG 5 cut(s) 135, 437, 467, 749, 990
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 5 cut(s) 487, 557, 634, 726, 891
BseMII CTCAG 3 cut(s) 163, 202, 973
BseNI ACTGG 4 cut(s) 168, 527, 731, 928
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 67, 395, 736
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 4 cut(s) 296, 358, 526, 697
BshNI GGYRCC 2 cut(s) 153, 338
BsiHKCI CYCGRG 1 cut(s) 24
BslI CCNNNNNNNGG 5 cut(s) 487, 557, 634, 726, 891
BsmAI GTCTC 2 cut(s) 27, 91
BsnI GGCC 4 cut(s) 296, 358, 526, 697
BsoBI CYCGRG 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 6 cut(s) 184, 270, 475, 484, 769, 859
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 3 cut(s) 298, 523, 885
BspANI GGCC 4 cut(s) 296, 358, 526, 697
BspCNI CTCAG 3 cut(s) 162, 201, 972
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 155, 340
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 2 cut(s) 278, 764
BspT107I GGYRCC 2 cut(s) 153, 338
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 4 cut(s) 168, 527, 731, 928
BssECI CCNNGG 4 cut(s) 287, 391, 501, 709
BssMI GATC 6 cut(s) 184, 270, 475, 484, 769, 859
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 501, 709
Bst2UI CCWGG 3 cut(s) 289, 343, 393
Bst4CI ACNGT 2 cut(s) 158, 469
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 792
BstC8I GCNNGC 5 cut(s) 294, 298, 315, 319, 351
BstDEI CTNAG 4 cut(s) 149, 188, 309, 959
BstDSI CCRYGG 1 cut(s) 501
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 5 cut(s) 135, 437, 467, 749, 990
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 3 cut(s) 202, 458, 841
BstKTI GATC 6 cut(s) 187, 273, 478, 487, 772, 862
BstMAI GTCTC 2 cut(s) 27, 91
BstMBI GATC 6 cut(s) 184, 270, 475, 484, 769, 859
BstMWI GCNNNNNNNGC 4 cut(s) 46, 199, 314, 355
BstNI CCWGG 3 cut(s) 289, 343, 393
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 287, 341, 391
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 67, 395, 736
BsuRI GGCC 4 cut(s) 296, 358, 526, 697
BtgI CCRYGG 1 cut(s) 501
BtgZI GCGATG 2 cut(s) 15, 258
BtsCI GGATG 5 cut(s) 135, 437, 467, 749, 990
BtsIMutI CAGTG 1 cut(s) 967
Cac8I GCNNGC 5 cut(s) 294, 298, 315, 319, 351
CciI TCATGA 1 cut(s) 675
CfoI GCGC 3 cut(s) 202, 458, 841
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 341
Csp6I GTAC 3 cut(s) 465, 513, 793
CviAII CATG 3 cut(s) 364, 502, 676
CviQI GTAC 3 cut(s) 465, 513, 793
DdeI CTNAG 4 cut(s) 149, 188, 309, 959
DpnI GATC 6 cut(s) 186, 272, 477, 486, 771, 861
DpnII GATC 6 cut(s) 184, 270, 475, 484, 769, 859
DraI TTTAAA 1 cut(s) 556
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 501, 709
Eco57I CTGAAG 2 cut(s) 65, 884
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 3 cut(s) 287, 341, 391
EcoT14I CCWWGG 2 cut(s) 501, 709
ErhI CCWWGG 2 cut(s) 501, 709
FaeI CATG 3 cut(s) 367, 505, 679
FatI CATG 3 cut(s) 363, 501, 675
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 4 cut(s) 81, 384, 524, 750
FokI GGATG 5 cut(s) 122, 444, 474, 756, 977
Fsp4HI GCNGC 4 cut(s) 81, 384, 524, 750
FspAI RTGCGCAY 1 cut(s) 840
FspBI CTAG 2 cut(s) 656, 710
FspI TGCGCA 1 cut(s) 840
GlaI GCGC 3 cut(s) 201, 457, 840
GluI GCNGC 4 cut(s) 81, 384, 524, 750
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 4 cut(s) 296, 358, 526, 697
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 202, 458, 841
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 367, 505, 679
Hin6I GCGC 3 cut(s) 200, 456, 839
HinP1I GCGC 3 cut(s) 200, 456, 839
HincII GTYRAC 2 cut(s) 420, 687
HindII GTYRAC 2 cut(s) 420, 687
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 5 cut(s) 163, 179, 237, 902, 933
HphI GGTGA 2 cut(s) 89, 911
Hpy166II GTNNAC 2 cut(s) 420, 687
Hpy188I TCNGA 3 cut(s) 45, 184, 864
Hpy188III TCNNGA 6 cut(s) 176, 404, 488, 676, 801, 845
Hpy8I GTNNAC 2 cut(s) 420, 687
Hpy99I CGWCG 2 cut(s) 10, 278
HpyAV CCTTC 3 cut(s) 63, 410, 859
HpyCH4III ACNGT 2 cut(s) 158, 469
HpyCH4IV ACGT 2 cut(s) 5, 511
HpyCH4V TGCA 4 cut(s) 83, 363, 752, 942
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 199, 314, 355
HpyF3I CTNAG 4 cut(s) 149, 188, 309, 959
HpySE526I ACGT 2 cut(s) 5, 511
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 367, 505, 679
HspAI GCGC 3 cut(s) 200, 456, 839
Kzo9I GATC 6 cut(s) 184, 270, 475, 484, 769, 859
LmnI GCTCC 2 cut(s) 71, 731
Lsp1109I GCAGC 3 cut(s) 67, 395, 736
LweI GCATC 3 cut(s) 38, 850, 951
MabI ACCWGGT 1 cut(s) 341
MaeI CTAG 2 cut(s) 656, 710
MaeII ACGT 2 cut(s) 5, 511
MalI GATC 6 cut(s) 186, 272, 477, 486, 771, 861
MboI GATC 6 cut(s) 184, 270, 475, 484, 769, 859
MboII GAAGA 1 cut(s) 866
MfeI CAATTG 1 cut(s) 581
MluCI AATT 6 cut(s) 581, 600, 619, 753, 978, 1030
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 140, 634
MnlI CCTC 7 cut(s) 60, 332, 617, 683, 708, 885, 968
MseI TTAA 6 cut(s) 144, 411, 449, 555, 723, 756
MslI CAYNNNNRTG 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 289, 343, 393
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 3 cut(s) 289, 343, 393
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 46, 199, 314, 355
NcoI CCATGG 1 cut(s) 501
NdeII GATC 6 cut(s) 184, 270, 475, 484, 769, 859
NlaIII CATG 3 cut(s) 367, 505, 679
NlaIV GGNNCC 2 cut(s) 155, 340
NsbI TGCGCA 1 cut(s) 840
NspI RCATGY 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 503
PagI TCATGA 1 cut(s) 675
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 321
PfeI GAWTC 4 cut(s) 163, 179, 902, 933
PkrI GCNGC 4 cut(s) 82, 385, 525, 751
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 3 cut(s) 287, 341, 391
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 3 cut(s) 287, 341, 391
PspN4I GGNNCC 2 cut(s) 155, 340
PspPI GGNCC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 3 cut(s) 466, 514, 794
RsaNI GTAC 3 cut(s) 465, 513, 793
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 6 cut(s) 144, 411, 449, 555, 723, 756
SatI GCNGC 4 cut(s) 81, 384, 524, 750
Sau3AI GATC 6 cut(s) 184, 270, 475, 484, 769, 859
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 3 cut(s) 289, 343, 393
SexAI ACCWGGT 1 cut(s) 341
SfaNI GCATC 3 cut(s) 38, 850, 951
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
Sse9I AATT 6 cut(s) 581, 600, 619, 753, 978, 1030
SsiI CCGC 3 cut(s) 298, 523, 885
SspMI CTAG 2 cut(s) 656, 710
StyD4I CCNGG 3 cut(s) 287, 341, 391
StyI CCWWGG 2 cut(s) 501, 709
TaaI ACNGT 2 cut(s) 158, 469
TaiI ACGT 2 cut(s) 8, 514
TaqI TCGA 3 cut(s) 218, 273, 324
TasI AATT 6 cut(s) 581, 600, 619, 753, 978, 1030
TatI WGTACW 1 cut(s) 792
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 4 cut(s) 163, 179, 902, 933
Tru1I TTAA 6 cut(s) 144, 411, 449, 555, 723, 756
Tru9I TTAA 6 cut(s) 144, 411, 449, 555, 723, 756
TscAI CASTG 1 cut(s) 967
TseI GCWGC 3 cut(s) 80, 383, 749
TspDTI ATGAA 4 cut(s) 124, 204, 692, 996
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 1 cut(s) 967
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 1 cut(s) 600
XceI RCATGY 1 cut(s) 367
XmaJI CCTAGG 1 cut(s) 709
XspI CTAG 2 cut(s) 656, 710
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.