Rmu_sc0004567.1_g000019

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004567.1
OG0001284
Physical Location & Seq
Reverse (-)
98003 .. 101618
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004567.1_g000019.1.cds

Sequence Viewer

Length: 768 bp
atgacgccgtttcggctcttgtctcgggcatcgcgtaggcttctgaagcctccttcactctctcgctcccatctctctgctgcagtctctacctatcacccaaccaccaaacccagccctaaagaaacgcctttcatcccttttaatctcaggcaccgttggattcccagttatcttgattctgatctcaggctcgtagcgcacatatccacttcatcgaacaaggacgacaaccgagtcagcgatgacccgaaagcccaagcttcttggatcgacgcttatttgcccaggcaggcccgcccttatgctaagctcgctcgcctcgacaagcccattggcacctggttgcttgcttggccttgcatgtggtcaataacattggcagcaaccccaggacaccttcctgatattaagatgttgacactatttggatgtggggctttgcttttaaggggcgctggatgtaccgtaaatgatctcattgatcgggatattgacaccatggtggaacgtacaaagctgcggccagttgcgagtggtcttttgacaccttttaaagggttgtgttttcttggatttcaattgcttttgggtcttggaattctcctccaactgaataattatagccgtgttttgggggcttcgtctttgttgctagttttctcgtatcccctcatgaaaaggttgacattctggatggttagttcaatatgctcatcagcggctcagcgccttaccctgagatgtggatcgtccaaggcacattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

255

Amino Acids

28.39

Weight (kDa)

10.11

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AccB1I GGYRCC 2 cut(s) 153, 338
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 298, 523, 722
AclWI GGATC 2 cut(s) 278, 757
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 466, 514
AfiI CCNNNNNNNGG 2 cut(s) 557, 634
AgsI TTSAA 2 cut(s) 581, 708
AjnI CCWGG 3 cut(s) 287, 341, 391
AleI CACNNNNGTG 1 cut(s) 503
AloI GAACNNNNNNTCC 2 cut(s) 688, 720
AluBI AGCT 3 cut(s) 263, 313, 520
AluI AGCT 3 cut(s) 263, 313, 520
Alw26I GTCTC 2 cut(s) 27, 91
AlwI GGATC 2 cut(s) 278, 757
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 3 cut(s) 294, 356, 524
ApeKI GCWGC 3 cut(s) 80, 383, 520
ApoI RAATTY 1 cut(s) 600
AspLEI GCGC 3 cut(s) 202, 458, 732
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 24
BanI GGYRCC 2 cut(s) 153, 338
BbvI GCAGC 3 cut(s) 67, 395, 507
BccI CCATC 2 cut(s) 78, 691
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 3 cut(s) 289, 343, 393
BciVI GTATCC 1 cut(s) 678
BcoDI GTCTC 2 cut(s) 27, 91
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 81
BfoI RGCGCY 2 cut(s) 459, 733
BfuI GTATCC 1 cut(s) 678
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 5 cut(s) 81, 384, 521, 524, 723
BlpI GCTNAGC 2 cut(s) 309, 726
BlsI GCNGC 5 cut(s) 82, 385, 522, 525, 724
Bme1390I CCNGG 3 cut(s) 289, 343, 393
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 155, 340
BmrFI CCNGG 3 cut(s) 289, 343, 393
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 162
Bpu1102I GCTNAGC 2 cut(s) 309, 726
BsaBI GATNNNNATC 2 cut(s) 183, 748
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 287, 391, 501, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 634
Bse1I ACTGG 2 cut(s) 168, 527
Bse8I GATNNNNATC 2 cut(s) 183, 748
BseBI CCWGG 3 cut(s) 289, 343, 393
BseDI CCNNGG 4 cut(s) 287, 391, 501, 756
BseGI GGATG 4 cut(s) 135, 437, 467, 702
BseJI GATNNNNATC 2 cut(s) 183, 748
BseLI CCNNNNNNNGG 2 cut(s) 557, 634
BseMII CTCAG 4 cut(s) 163, 202, 731, 740
BseNI ACTGG 2 cut(s) 168, 527
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 67, 395, 507
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 296, 358, 526
BshNI GGYRCC 2 cut(s) 153, 338
BsiHKCI CYCGRG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 557, 634
BsmAI GTCTC 2 cut(s) 27, 91
BsnI GGCC 3 cut(s) 296, 358, 526
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 5 cut(s) 184, 270, 475, 484, 749
Bsp1720I GCTNAGC 2 cut(s) 309, 726
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 3 cut(s) 298, 523, 722
BspANI GGCC 3 cut(s) 296, 358, 526
BspCNI CTCAG 4 cut(s) 162, 201, 732, 739
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 155, 340
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 2 cut(s) 278, 757
BspT107I GGYRCC 2 cut(s) 153, 338
BsrI ACTGG 2 cut(s) 168, 527
BssECI CCNNGG 4 cut(s) 287, 391, 501, 756
BssMI GATC 5 cut(s) 184, 270, 475, 484, 749
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 501, 756
Bst2UI CCWGG 3 cut(s) 289, 343, 393
Bst4CI ACNGT 2 cut(s) 158, 469
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 294, 298, 315, 319, 351
BstDEI CTNAG 5 cut(s) 149, 188, 309, 726, 740
BstDSI CCRYGG 1 cut(s) 501
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 4 cut(s) 135, 437, 467, 702
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 2 cut(s) 459, 733
BstHHI GCGC 3 cut(s) 202, 458, 732
BstKTI GATC 5 cut(s) 187, 273, 478, 487, 752
BstMAI GTCTC 2 cut(s) 27, 91
BstMBI GATC 5 cut(s) 184, 270, 475, 484, 749
BstMWI GCNNNNNNNGC 5 cut(s) 13, 46, 199, 314, 355
BstNI CCWGG 3 cut(s) 289, 343, 393
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 287, 341, 391
BstSFI CTRYAG 1 cut(s) 81
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 67, 395, 507
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 3 cut(s) 296, 358, 526
BtgI CCRYGG 1 cut(s) 501
BtgZI GCGATG 2 cut(s) 15, 258
BtsCI GGATG 4 cut(s) 135, 437, 467, 702
Cac8I GCNNGC 5 cut(s) 294, 298, 315, 319, 351
CciI TCATGA 1 cut(s) 675
CfoI GCGC 3 cut(s) 202, 458, 732
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 2 cut(s) 13, 284
CsiI ACCWGGT 1 cut(s) 341
Csp6I GTAC 2 cut(s) 465, 513
CviAII CATG 3 cut(s) 364, 502, 676
CviQI GTAC 2 cut(s) 465, 513
DdeI CTNAG 5 cut(s) 149, 188, 309, 726, 740
DpnI GATC 5 cut(s) 186, 272, 477, 486, 751
DpnII GATC 5 cut(s) 184, 270, 475, 484, 749
DraI TTTAAA 1 cut(s) 556
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 501, 756
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 3 cut(s) 287, 341, 391
EcoT14I CCWWGG 2 cut(s) 501, 756
ErhI CCWWGG 2 cut(s) 501, 756
FaeI CATG 3 cut(s) 367, 505, 679
FaiI YATR 7 cut(s) 206, 306, 365, 503, 624, 677, 712
FatI CATG 3 cut(s) 363, 501, 675
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 5 cut(s) 81, 384, 521, 524, 723
FokI GGATG 4 cut(s) 122, 444, 474, 709
Fsp4HI GCNGC 5 cut(s) 81, 384, 521, 524, 723
FspBI CTAG 1 cut(s) 656
GlaI GCGC 3 cut(s) 201, 457, 731
GluI GCNGC 5 cut(s) 81, 384, 521, 524, 723
GsaI CCCAGC 1 cut(s) 117
HaeII RGCGCY 2 cut(s) 459, 733
HaeIII GGCC 3 cut(s) 296, 358, 526
HgaI GACGC 2 cut(s) 13, 284
HhaI GCGC 3 cut(s) 202, 458, 732
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 367, 505, 679
Hin6I GCGC 3 cut(s) 200, 456, 730
HinP1I GCGC 3 cut(s) 200, 456, 730
HincII GTYRAC 2 cut(s) 420, 687
HindII GTYRAC 2 cut(s) 420, 687
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 3 cut(s) 163, 179, 237
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 420, 687
Hpy188I TCNGA 2 cut(s) 45, 184
Hpy188III TCNNGA 5 cut(s) 176, 404, 488, 676, 694
Hpy8I GTNNAC 2 cut(s) 420, 687
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 63, 410
HpyCH4III ACNGT 2 cut(s) 158, 469
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 2 cut(s) 83, 363
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 46, 199, 314, 355
HpyF3I CTNAG 5 cut(s) 149, 188, 309, 726, 740
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 367, 505, 679
HspAI GCGC 3 cut(s) 200, 456, 730
Kzo9I GATC 5 cut(s) 184, 270, 475, 484, 749
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 3 cut(s) 67, 395, 507
LweI GCATC 1 cut(s) 38
MabI ACCWGGT 1 cut(s) 341
MaeI CTAG 1 cut(s) 656
MaeII ACGT 1 cut(s) 511
MalI GATC 5 cut(s) 186, 272, 477, 486, 751
MboI GATC 5 cut(s) 184, 270, 475, 484, 749
MfeI CAATTG 1 cut(s) 581
MluCI AATT 3 cut(s) 581, 600, 619
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 140, 634
MnlI CCTC 4 cut(s) 60, 332, 617, 683
MseI TTAA 4 cut(s) 144, 411, 449, 555
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 722
MspR9I CCNGG 3 cut(s) 289, 343, 393
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 3 cut(s) 289, 343, 393
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 13, 46, 199, 314, 355
NcoI CCATGG 1 cut(s) 501
NdeII GATC 5 cut(s) 184, 270, 475, 484, 749
NlaIII CATG 3 cut(s) 367, 505, 679
NlaIV GGNNCC 2 cut(s) 155, 340
NspI RCATGY 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 503
PagI TCATGA 1 cut(s) 675
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 321
PfeI GAWTC 2 cut(s) 163, 179
PkrI GCNGC 5 cut(s) 82, 385, 522, 525, 724
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 3 cut(s) 287, 341, 391
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 3 cut(s) 287, 341, 391
PspN4I GGNNCC 2 cut(s) 155, 340
PspPI GGNCC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 2 cut(s) 466, 514
RsaNI GTAC 2 cut(s) 465, 513
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 4 cut(s) 144, 411, 449, 555
SatI GCNGC 5 cut(s) 81, 384, 521, 524, 723
Sau3AI GATC 5 cut(s) 184, 270, 475, 484, 749
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 3 cut(s) 289, 343, 393
SetI ASST 9 cut(s) 95, 265, 315, 344, 402, 514, 522, 553, 686
SexAI ACCWGGT 1 cut(s) 341
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 503
Sse9I AATT 3 cut(s) 581, 600, 619
SsiI CCGC 3 cut(s) 298, 523, 722
SspMI CTAG 1 cut(s) 656
StyD4I CCNGG 3 cut(s) 287, 341, 391
StyI CCWWGG 2 cut(s) 501, 756
TaaI ACNGT 2 cut(s) 158, 469
TaiI ACGT 1 cut(s) 514
TaqI TCGA 3 cut(s) 218, 273, 324
TasI AATT 3 cut(s) 581, 600, 619
TauI GCSGC 2 cut(s) 526, 725
TfiI GAWTC 2 cut(s) 163, 179
Tru1I TTAA 4 cut(s) 144, 411, 449, 555
Tru9I TTAA 4 cut(s) 144, 411, 449, 555
TseI GCWGC 3 cut(s) 80, 383, 520
TspDTI ATGAA 3 cut(s) 124, 204, 692
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 1 cut(s) 600
XceI RCATGY 1 cut(s) 367
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.