pycom11g09460

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001284
Physical Location & Seq
Reverse (-)
7672449 .. 7674849
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09460.3

Sequence Viewer

Length: 738 bp
ATGATGTTGATACTATTTGGATTTGGAGCTCTGTTTACTAGCGGCGCCGCATGCACCATAAACGATCTCCTTGACCGGGATATTGATGCCAAGGTGGAACGTACAAAGTCGCGGCCTCTTGCAAGTGGTGTTTTGACACCTTTTCAGGGGATTTCATTTCTTGGATTTCAATTGCTCTTGGTTCTAGGAACTCTCCTTCCATTGAACAATTATAGCTGCGTTTTGGGGGTTTCATCTTGGTTCCTAATTTTCACCTATCCTCTCATGAAGAGATTGACAGACTGGCCTCAAGCCTATCTAGGTTTGATGATAAATTGGGGGGCCTTGCTAGGATGGGCAGCAGTAAAAGGAAGCATTGATCCAACTGTCGTGCTCCCATTGTACTTTTCTGCAGTATGCTGGACACTTGTCTATGATACCATATATGCACATCAGGACAAGGAAGATGATTCGAAAGTAGGTGTTAAGTCTACGGCATTGAAATTTGGCGACTCAACCCAAAAATGGATTACTGGGTTTGGAATCGTGTGCTTGAGCTGTCTTGCCCTCAGTGGATACAATGCTGGAATAGGGTGGCCGTACTATGCATTTTTGGGGGTTGCATTTGGACAATTAGCTTGGCAAATATCAACCGTTGATCTTTCATGCCCAGCTGATTGCAATAGAAAATTTGTGTCGAACAAGTGGTTTGGCGCTATTATGTTCATCGCAATCCTATTTGGACGACTTTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

246

Amino Acids

26.9

Weight (kDa)

8.12

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 112
AciI CCGC 3 cut(s) 42, 48, 112
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 575
AcsI RAATTY 2 cut(s) 482, 668
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 3 cut(s) 103, 383, 581
AfiI CCNNNNNNNGG 3 cut(s) 76, 146, 504
AgsI TTSAA 3 cut(s) 170, 205, 481
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 5 cut(s) 29, 216, 537, 617, 653
AluI AGCT 5 cut(s) 29, 216, 537, 617, 653
Alw21I GWGCWC 2 cut(s) 31, 375
AlwI GGATC 1 cut(s) 353
AoxI GGCC 4 cut(s) 113, 284, 321, 575
ApeKI GCWGC 2 cut(s) 216, 338
ApoI RAATTY 2 cut(s) 482, 668
AspLEI GCGC 2 cut(s) 47, 695
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 452
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 31, 375
BbvI GCAGC 2 cut(s) 203, 350
BccI CCATC 1 cut(s) 327
BceAI ACGGC 2 cut(s) 489, 562
BciVI GTATCC 1 cut(s) 548
BcnI CCSGG 1 cut(s) 77
BfaI CTAG 4 cut(s) 39, 185, 299, 329
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 2 cut(s) 48, 696
BfuI GTATCC 1 cut(s) 548
BisI GCNGC 5 cut(s) 43, 48, 113, 217, 339
BlsI GCNGC 5 cut(s) 44, 49, 114, 218, 340
Bme1390I CCNGG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 3 cut(s) 46, 242, 322
BmrFI CCNGG 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 522
BoxI GACNNNNGTC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 273, 553
BpuMI CCSGG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 146, 504
Bse1I ACTGG 2 cut(s) 287, 517
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 3 cut(s) 76, 146, 504
BseMII CTCAG 1 cut(s) 562
BseNI ACTGG 2 cut(s) 287, 517
BseXI GCAGC 2 cut(s) 203, 350
BseYI CCCAGC 1 cut(s) 649
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 4 cut(s) 115, 286, 323, 577
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 31, 375
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 3 cut(s) 76, 146, 504
BsnI GGCC 4 cut(s) 115, 286, 323, 577
Bsp119I TTCGAA 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 31, 375
Bsp143I GATC 3 cut(s) 64, 358, 637
BspACI CCGC 3 cut(s) 42, 48, 112
BspANI GGCC 4 cut(s) 115, 286, 323, 577
BspCNI CTCAG 1 cut(s) 561
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 46, 242, 322
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 44
BsrI ACTGG 2 cut(s) 287, 517
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 64, 358, 637
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 367, 634
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 2 cut(s) 48, 696
BstHHI GCGC 2 cut(s) 47, 695
BstKTI GATC 3 cut(s) 67, 361, 640
BstMBI GATC 3 cut(s) 64, 358, 637
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 54
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 203, 350
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 4 cut(s) 115, 286, 323, 577
BtgZI GCGATG 1 cut(s) 691
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 52
CciI TCATGA 1 cut(s) 264
CfoI GCGC 2 cut(s) 47, 695
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 3 cut(s) 102, 382, 580
CviAII CATG 3 cut(s) 51, 265, 645
CviQI GTAC 3 cut(s) 102, 382, 580
DdeI CTNAG 1 cut(s) 548
DinI GGCGCC 1 cut(s) 46
DpnI GATC 3 cut(s) 66, 360, 639
DpnII GATC 3 cut(s) 64, 358, 637
EaeI YGGCCR 1 cut(s) 575
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 54, 268, 648
FatI CATG 3 cut(s) 50, 264, 644
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 5 cut(s) 43, 48, 113, 217, 339
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 5 cut(s) 43, 48, 113, 217, 339
FspBI CTAG 4 cut(s) 39, 185, 299, 329
GlaI GCGC 2 cut(s) 46, 694
GluI GCNGC 5 cut(s) 43, 48, 113, 217, 339
GsaI CCCAGC 1 cut(s) 653
HaeII RGCGCY 2 cut(s) 48, 696
HaeIII GGCC 4 cut(s) 115, 286, 323, 577
HapII CCGG 1 cut(s) 76
HhaI GCGC 2 cut(s) 47, 695
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 3 cut(s) 54, 268, 648
Hin6I GCGC 2 cut(s) 45, 693
HinP1I GCGC 2 cut(s) 45, 693
HinfI GANTC 3 cut(s) 449, 491, 522
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 36, 471
Hpy188III TCNNGA 2 cut(s) 265, 434
Hpy8I GTNNAC 2 cut(s) 36, 471
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 367, 634
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 7 cut(s) 54, 122, 392, 428, 587, 602, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 1 cut(s) 100
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 3 cut(s) 54, 268, 648
HspAI GCGC 2 cut(s) 45, 693
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 64, 358, 637
LmnI GCTCC 2 cut(s) 26, 378
LpnPI CCDG 8 cut(s) 89, 131, 268, 385, 419, 498, 549, 663
Lsp1109I GCAGC 2 cut(s) 203, 350
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 39, 185, 299, 329
MaeII ACGT 1 cut(s) 100
MalI GATC 3 cut(s) 66, 360, 639
MboI GATC 3 cut(s) 64, 358, 637
MboII GAAGA 2 cut(s) 280, 455
MfeI CAATTG 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 31, 375
MluCI AATT 7 cut(s) 170, 208, 246, 313, 482, 611, 668
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 4 cut(s) 126, 270, 297, 557
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 170
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 51
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 64, 358, 637
NlaIII CATG 3 cut(s) 54, 268, 648
NlaIV GGNNCC 3 cut(s) 46, 242, 322
NsiI ATGCAT 1 cut(s) 589
NspI RCATGY 1 cut(s) 54
NspV TTCGAA 1 cut(s) 452
PaeI GCATGC 1 cut(s) 54
PagI TCATGA 1 cut(s) 264
PfeI GAWTC 2 cut(s) 449, 522
PkrI GCNGC 5 cut(s) 44, 49, 114, 218, 340
PleI GAGTC 1 cut(s) 485
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 485
PshAI GACNNNNGTC 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 46, 242, 322
PspPI GGNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 3 cut(s) 103, 383, 581
RsaNI GTAC 3 cut(s) 102, 382, 580
SacI GAGCTC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 5 cut(s) 43, 48, 113, 217, 339
Sau3AI GATC 3 cut(s) 64, 358, 637
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 2 cut(s) 31, 375
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 390
SfoI GGCGCC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 288, 532
SmoI CTYRAG 2 cut(s) 288, 532
SphI GCATGC 1 cut(s) 54
Sse9I AATT 7 cut(s) 170, 208, 246, 313, 482, 611, 668
SsiI CCGC 3 cut(s) 42, 48, 112
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 4 cut(s) 39, 185, 299, 329
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 367, 634
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 452, 677
TasI AATT 7 cut(s) 170, 208, 246, 313, 482, 611, 668
TatI WGTACW 1 cut(s) 381
TauI GCSGC 3 cut(s) 45, 50, 115
TfiI GAWTC 2 cut(s) 449, 522
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 556
TseI GCWGC 2 cut(s) 216, 338
TspDTI ATGAA 6 cut(s) 144, 222, 281, 633, 694, 720
TspRI CASTG 1 cut(s) 556
XapI RAATTY 2 cut(s) 482, 668
XceI RCATGY 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 4 cut(s) 39, 185, 299, 329
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.