Rh5BG308400

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001284
Physical Location & Seq
Reverse (-)
40208919 .. 40296680
87762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG308400.1

Sequence Viewer

Length: 735 bp
ATGTTGACACTACTTGGATGTTGGGCTTTTTTTTTAAGAGGCGCCGCATGTACCATAAATGATATCCTTGATCGAGATATTGACGCCATGGTGGAACGTACAAAGTTGCGGCCAATTGCGAGTGGTCTTTTAACACCTTTTCAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTTGTTCTTGGGACTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCCCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTAGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATTAAAGGAAGCATTGATCCAGCTATAATAGTTCCGTTGTACATTTCTGGAGTATTTTGGACACTTGTGTATGATACGATATATGCGCATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCCCTCAGTGGATATAATGCCGAAATTGGCTGGCCATATTATGCACTTTTGGCAGTCGCATCTGGACAATTAGCGTGGCAGATATGGACAGTTGACCTTTCATCCAGGCTTGATTGCAATAGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGGAATCTTATTGGGAAGACTTTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

244

Amino Acids

27.06

Weight (kDa)

8.51

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 2 - 225 8.5e-56 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 3 cut(s) 45, 109, 471
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 2 cut(s) 110, 572
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 2 cut(s) 42, 84
AfaI GTAC 3 cut(s) 52, 100, 380
AfiI CCNNNNNNNGG 4 cut(s) 143, 220, 312, 477
AgsI TTSAA 3 cut(s) 143, 167, 492
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 2 cut(s) 320, 362
AluI AGCT 2 cut(s) 320, 362
AlwI GGATC 1 cut(s) 350
AoxI GGCC 3 cut(s) 110, 281, 572
ApeKI GCWGC 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 724
AspA2I CCTAGG 1 cut(s) 295
AspLEI GCGC 2 cut(s) 44, 427
AsuHPI GGTGA 1 cut(s) 497
AvrII CCTAGG 1 cut(s) 295
BalI TGGCCA 1 cut(s) 574
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 727
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 646
BfaI CTAG 2 cut(s) 242, 296
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 3 cut(s) 45, 110, 336
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 3 cut(s) 46, 111, 337
Bme1390I CCNGG 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 646
BmrI ACTGGG 2 cut(s) 322, 519
BmsI GCATC 3 cut(s) 436, 537, 608
BmuI ACTGGG 2 cut(s) 322, 519
BpiI GAAGAC 1 cut(s) 727
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 42, 84
BsaJI CCNNGG 2 cut(s) 87, 295
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 220, 312, 477
Bse1I ACTGG 2 cut(s) 317, 514
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 2 cut(s) 87, 295
BseGI GGATG 3 cut(s) 23, 335, 641
BseLI CCNNNNNNNGG 4 cut(s) 143, 220, 312, 477
BseMII CTCAG 1 cut(s) 559
BseNI ACTGG 2 cut(s) 317, 514
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 3 cut(s) 112, 283, 574
BshNI GGYRCC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 4 cut(s) 143, 220, 312, 477
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 3 cut(s) 112, 283, 574
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 3 cut(s) 70, 355, 445
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 3 cut(s) 45, 109, 471
BspANI GGCC 3 cut(s) 112, 283, 574
BspCNI CTCAG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 43
BspPI GGATC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 41
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 2 cut(s) 317, 514
BssECI CCNNGG 2 cut(s) 87, 295
BssMI GATC 3 cut(s) 70, 355, 445
BssNI GRCGYC 2 cut(s) 42, 84
BssT1I CCWWGG 2 cut(s) 87, 295
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 1 cut(s) 631
BstACI GRCGYC 2 cut(s) 42, 84
BstAUI TGTACA 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 572
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 1 cut(s) 87
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 23, 335, 641
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 2 cut(s) 44, 427
BstKTI GATC 3 cut(s) 73, 358, 448
BstMBI GATC 3 cut(s) 70, 355, 445
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 727
BsuRI GGCC 3 cut(s) 112, 283, 574
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 3 cut(s) 23, 335, 641
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 553, 709
Cac8I GCNNGC 1 cut(s) 572
CciI TCATGA 1 cut(s) 261
CfoI GCGC 2 cut(s) 44, 427
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 51, 99, 379
CspCI CAANNNNNGTGG 2 cut(s) 596, 631
CviAII CATG 3 cut(s) 48, 88, 262
CviQI GTAC 3 cut(s) 51, 99, 379
DdeI CTNAG 1 cut(s) 545
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 72, 357, 447
DpnII GATC 3 cut(s) 70, 355, 445
EaeI YGGCCR 2 cut(s) 110, 572
Eco130I CCWWGG 2 cut(s) 87, 295
Eco32I GATATC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 644
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 87, 295
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 2 cut(s) 87, 295
FaeI CATG 3 cut(s) 51, 91, 265
FaqI GGGAC 1 cut(s) 199
FatI CATG 3 cut(s) 47, 87, 261
Fnu4HI GCNGC 3 cut(s) 45, 110, 336
FokI GGATG 3 cut(s) 30, 342, 628
Fsp4HI GCNGC 3 cut(s) 45, 110, 336
FspAI RTGCGCAY 1 cut(s) 426
FspBI CTAG 2 cut(s) 242, 296
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 2 cut(s) 43, 426
GluI GCNGC 3 cut(s) 45, 110, 336
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 112, 283, 574
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 44, 427
Hin1I GRCGYC 2 cut(s) 42, 84
Hin1II CATG 3 cut(s) 51, 91, 265
Hin6I GCGC 2 cut(s) 42, 425
HinP1I GCGC 2 cut(s) 42, 425
HincII GTYRAC 3 cut(s) 6, 273, 634
HindII GTYRAC 3 cut(s) 6, 273, 634
HinfI GANTC 4 cut(s) 187, 488, 519, 708
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 3 cut(s) 6, 273, 634
Hpy188I TCNGA 2 cut(s) 161, 450
Hpy188III TCNNGA 5 cut(s) 74, 262, 387, 431, 603
Hpy8I GTNNAC 3 cut(s) 6, 273, 634
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 338, 528, 584, 657, 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 2 cut(s) 42, 84
Hsp92II CATG 3 cut(s) 51, 91, 265
HspAI GCGC 2 cut(s) 42, 425
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 70, 355, 445
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 3 cut(s) 436, 537, 608
MaeI CTAG 2 cut(s) 242, 296
MaeII ACGT 1 cut(s) 97
MalI GATC 3 cut(s) 72, 357, 447
MboI GATC 3 cut(s) 70, 355, 445
MboII GAAGA 2 cut(s) 452, 732
MfeI CAATTG 2 cut(s) 114, 167
MlsI TGGCCA 1 cut(s) 574
MluCI AATT 6 cut(s) 114, 167, 205, 339, 564, 608
MluNI TGGCCA 1 cut(s) 574
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 6 cut(s) 32, 203, 269, 294, 471, 554
Mox20I TGGCCA 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 724
MscI TGGCCA 1 cut(s) 574
MseI TTAA 4 cut(s) 35, 131, 309, 342
Msp20I TGGCCA 1 cut(s) 574
MspR9I CCNGG 1 cut(s) 646
MunI CAATTG 2 cut(s) 114, 167
MvaI CCWGG 1 cut(s) 646
MwoI GCNNNNNNNGC 1 cut(s) 590
NarI GGCGCC 1 cut(s) 42
NcoI CCATGG 1 cut(s) 87
NdeII GATC 3 cut(s) 70, 355, 445
NlaIII CATG 3 cut(s) 51, 91, 265
NlaIV GGNNCC 1 cut(s) 43
NsbI TGCGCA 1 cut(s) 426
NspI RCATGY 1 cut(s) 51
PagI TCATGA 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 3 cut(s) 488, 519, 708
PkrI GCNGC 3 cut(s) 46, 111, 337
PleI GAGTC 1 cut(s) 181
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 1 cut(s) 43
RsaI GTAC 3 cut(s) 52, 100, 380
RsaNI GTAC 3 cut(s) 51, 99, 379
SaqAI TTAA 4 cut(s) 35, 131, 309, 342
SatI GCNGC 3 cut(s) 45, 110, 336
Sau3AI GATC 3 cut(s) 70, 355, 445
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 646
SfaNI GCATC 3 cut(s) 436, 537, 608
SfoI GGCGCC 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 6 cut(s) 114, 167, 205, 339, 564, 608
SsiI CCGC 3 cut(s) 45, 109, 471
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 242, 296
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 2 cut(s) 87, 295
TaaI ACNGT 1 cut(s) 631
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 73, 674
TasI AATT 6 cut(s) 114, 167, 205, 339, 564, 608
TatI WGTACW 1 cut(s) 378
TauI GCSGC 2 cut(s) 47, 112
TfiI GAWTC 3 cut(s) 488, 519, 708
Tru1I TTAA 4 cut(s) 35, 131, 309, 342
Tru9I TTAA 4 cut(s) 35, 131, 309, 342
TscAI CASTG 2 cut(s) 553, 709
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 3 cut(s) 278, 630, 717
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 2 cut(s) 553, 709
XagI CCTNNNNNAGG 1 cut(s) 141
XceI RCATGY 1 cut(s) 51
XmaJI CCTAGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 2 cut(s) 242, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.