MD11G1112700.v1.1

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001284
Physical Location & Seq
Reverse (-)
10189220 .. 10198644
9425 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1112700.v1.1.491

Sequence Viewer

Length: 1266 bp
ATGGAGTCTTTGGTGGTGTCTCTGAAACCTTCACGTTCTCTCTCTGGCACCCTCTTCGCAGCATCTTCTTATCACCCAATTTCCACCACCACCACCACCACTGCCACCAGCAATCCAAGCCCTTACCGCTATCCCAACGCAAGACGGTTGGGCTCATTCAGTCAAAGGCACTGTCGTCGGGATACTTCCAGTCACTTTGACTTCGATCTCAGACTCAGATCGTACATCTCGAGCTCGTCTTCACCATCTACTATGCCAAAGAAGGGTGGAAATCAAACCAGCGGCGATGAAAACAACAAGGCTGAGGGTTCTTGGATCGACTTGTACCTGCCAATGCAAGCTCAGCCTTATGCTAAGCTCGCCCGCCTCGACAAGCCGATCGGCACCTGGCTGTTTGCTTGGCCTTCTTTGTGGTCAACAGCACTGGCTGCAAGTCCAGGACAGCTTCCTGATATTATGATGTTGATACTATTTGGATTTGGAGCTCTGTTTACTAGGGGCGCCTCGTGCACCATAAACGATCTCCTTGACCGGGATATTGATGGCAAGGTGGAACGTACAAAGTCGCGGCCTCTTGCAAGTGGTGTTTTGACACCTTTTCAGGGGATTTCTTTTCTTGGATTTCAATTGCTCTTGGTTCTAGGAACTCTCCTTCAAGTAAACAATTATAGCTGCGTTTTGGGGGTTTCATCTTGGTTCCTAATTTTCACCTATCCTCTCATGAAGAGATTGACATATTGGCCTCAAGCCTATCTAGGTTTGATGATTAATTGGGGGGCTTTATTAGGATGGGCAACAGTAAAAGGAAGCATTGATCCAGTTATAGTGCTCCCATTGTACTTTTCTGCAGTATGCTGGACACTTGTCTATGATACCATATATGCACATCAGGACAAGGAAGATGATTTGAAAGTAGGTGTTAAGTCTACGGCATTGAAATTTGGCGACTCCACCAAAAAATGGATTACTGGGTTTGGAATCGTGTGCTTGAGCAGTCTTGCCCTCAGTGGATACAATGCTGGGATAGGGTGGCCGTACTATGCATTTTTGGGGGTTGCATTTGGACAATTAGCTTGGCAAATATCAACAGTTAATCTTTCATCCTCAGCTGATTGCAATAGAAAGTACATTTGTGTCGAACAAGTGGTTTGGCGCTATTATGTTCATCGCAATCCTATTTGGACGACTTTCATCATAAGGAGATGCAGTTCGTCATTCTCTTGCACTGTTCTCGTATATTGGCAAGAAGGTTGCAAGGTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

422

Amino Acids

46.9

Weight (kDa)

9.24

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 133 - 376 6.9e-58 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AccB1I GGYRCC 3 cut(s) 47, 383, 500
AccB7I CCANNNNNTGG 1 cut(s) 960
AccI GTMKAC 1 cut(s) 926
AccII CGCG 1 cut(s) 568
AciI CCGC 4 cut(s) 127, 282, 364, 568
AclWI GGATC 2 cut(s) 323, 809
AcoI YGGCCR 1 cut(s) 1031
AcsI RAATTY 1 cut(s) 938
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 6 cut(s) 224, 326, 559, 839, 1037, 1127
AfiI CCNNNNNNNGG 4 cut(s) 263, 532, 602, 960
AgsI TTSAA 4 cut(s) 626, 656, 910, 937
AjnI CCWGG 2 cut(s) 386, 436
AloI GAACNNNNNNTCC 2 cut(s) 1192, 1224
AluBI AGCT 8 cut(s) 234, 341, 358, 445, 485, 672, 1073, 1109
AluI AGCT 8 cut(s) 234, 341, 358, 445, 485, 672, 1073, 1109
Alw21I GWGCWC 4 cut(s) 236, 487, 512, 831
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 2 cut(s) 323, 809
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 4 cut(s) 401, 569, 740, 1031
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 3 cut(s) 59, 428, 672
ApoI RAATTY 1 cut(s) 938
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AseI ATTAAT 1 cut(s) 768
AspLEI GCGC 2 cut(s) 503, 1155
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 3 cut(s) 65, 234, 700
AvaI CYCGRG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 3 cut(s) 47, 383, 500
BanII GRGCYC 3 cut(s) 155, 236, 487
BauI CACGAG 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 4 cut(s) 236, 487, 512, 831
BbvCI CCTCAGC 2 cut(s) 303, 1105
BbvI GCAGC 3 cut(s) 71, 415, 659
BccI CCATC 3 cut(s) 253, 536, 783
BceAI ACGGC 2 cut(s) 945, 1018
BcgI CGANNNNNNTGC 6 cut(s) 37, 71, 158, 192, 1213, 1247
BciT130I CCWGG 2 cut(s) 388, 438
BciVI GTATCC 2 cut(s) 175, 1004
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 3 cut(s) 495, 641, 755
BfmI CTRYAG 1 cut(s) 846
BfoI RGCGCY 2 cut(s) 504, 1156
BfuAI ACCTGC 1 cut(s) 336
BfuI GTATCC 2 cut(s) 175, 1004
BisI GCNGC 5 cut(s) 60, 283, 429, 569, 673
BlpI GCTNAGC 2 cut(s) 342, 354
BlsI GCNGC 5 cut(s) 61, 284, 430, 570, 674
Bme1390I CCNGG 3 cut(s) 388, 438, 533
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 4 cut(s) 49, 385, 502, 698
BmrFI CCNGG 3 cut(s) 388, 438, 533
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 2 cut(s) 71, 1193
BmuI ACTGGG 1 cut(s) 978
BoxI GACNNNNGTC 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 2 cut(s) 303, 1105
Bpu1102I GCTNAGC 2 cut(s) 342, 354
BpuEI CTTGAG 2 cut(s) 729, 1009
BpuMI CCSGG 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 1192, 1222
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 532, 602, 960
Bse1I ACTGG 4 cut(s) 189, 429, 818, 973
BseBI CCWGG 2 cut(s) 388, 438
BseGI GGATG 2 cut(s) 794, 1100
BseLI CCNNNNNNNGG 4 cut(s) 263, 532, 602, 960
BseMII CTCAG 6 cut(s) 223, 229, 294, 356, 1018, 1119
BseNI ACTGG 4 cut(s) 189, 429, 818, 973
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 3 cut(s) 71, 415, 659
BseYI CCCAGC 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 568
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 4 cut(s) 403, 571, 742, 1033
BshNI GGYRCC 3 cut(s) 47, 383, 500
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 4 cut(s) 236, 487, 512, 831
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 532
BslI CCNNNNNNNGG 4 cut(s) 263, 532, 602, 960
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 4 cut(s) 403, 571, 742, 1033
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 5 cut(s) 155, 236, 487, 512, 831
Bsp143I GATC 6 cut(s) 205, 218, 315, 378, 520, 814
Bsp1720I GCTNAGC 2 cut(s) 342, 354
BspACI CCGC 4 cut(s) 127, 282, 364, 568
BspANI GGCC 4 cut(s) 403, 571, 742, 1033
BspCNI CTCAG 6 cut(s) 222, 228, 295, 355, 1017, 1118
BspFNI CGCG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 4 cut(s) 49, 385, 502, 698
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 2 cut(s) 323, 809
BspT107I GGYRCC 3 cut(s) 47, 383, 500
BsrI ACTGG 4 cut(s) 189, 429, 818, 973
BssMI GATC 6 cut(s) 205, 218, 315, 378, 520, 814
BssNI GRCGYC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 2 cut(s) 388, 438
Bst4CI ACNGT 5 cut(s) 147, 173, 799, 1090, 1228
Bst6I CTCTTC 2 cut(s) 59, 719
BstACI GRCGYC 1 cut(s) 501
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 339, 360, 364
BstDEI CTNAG 7 cut(s) 209, 215, 303, 342, 354, 1004, 1105
BstF5I GGATG 2 cut(s) 794, 1100
BstFNI CGCG 1 cut(s) 568
BstH2I RGCGCY 2 cut(s) 504, 1156
BstHHI GCGC 2 cut(s) 503, 1155
BstKTI GATC 6 cut(s) 208, 221, 318, 381, 523, 817
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 6 cut(s) 205, 218, 315, 378, 520, 814
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 6 cut(s) 117, 126, 343, 359, 428, 507
BstNI CCWGG 2 cut(s) 388, 438
BstPAI GACNNNNGTC 1 cut(s) 863
BstSCI CCNGG 3 cut(s) 386, 436, 531
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 71, 415, 659
BstV2I GAAGAC 1 cut(s) 231
BsuI GTATCC 2 cut(s) 175, 1004
BsuRI GGCC 4 cut(s) 403, 571, 742, 1033
BtgZI GCGATG 2 cut(s) 300, 1151
BtsCI GGATG 2 cut(s) 794, 1100
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 5 cut(s) 99, 169, 422, 1012, 1224
BveI ACCTGC 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 339, 360, 364
CciI TCATGA 1 cut(s) 720
CfoI GCGC 2 cut(s) 503, 1155
Csp6I GTAC 6 cut(s) 223, 325, 558, 838, 1036, 1126
CviAII CATG 1 cut(s) 721
CviQI GTAC 6 cut(s) 223, 325, 558, 838, 1036, 1126
DdeI CTNAG 7 cut(s) 209, 215, 303, 342, 354, 1004, 1105
DinI GGCGCC 1 cut(s) 502
DpnI GATC 6 cut(s) 207, 220, 317, 380, 522, 816
DpnII GATC 6 cut(s) 205, 218, 315, 378, 520, 814
EaeI YGGCCR 1 cut(s) 1031
Eam1104I CTCTTC 2 cut(s) 59, 719
EarI CTCTTC 2 cut(s) 59, 719
Ecl136II GAGCTC 2 cut(s) 234, 485
Eco24I GRGCYC 3 cut(s) 155, 236, 487
Eco53kI GAGCTC 2 cut(s) 234, 485
Eco88I CYCGRG 1 cut(s) 229
EcoICRI GAGCTC 2 cut(s) 234, 485
EcoRII CCWGG 2 cut(s) 386, 436
EcoT22I ATGCAT 1 cut(s) 1045
EcoT38I GRGCYC 3 cut(s) 155, 236, 487
EgeI GGCGCC 1 cut(s) 502
EheI GGCGCC 1 cut(s) 502
FaeI CATG 1 cut(s) 724
FatI CATG 1 cut(s) 720
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 1 cut(s) 926
Fnu4HI GCNGC 5 cut(s) 60, 283, 429, 569, 673
FokI GGATG 2 cut(s) 801, 1087
FriOI GRGCYC 3 cut(s) 155, 236, 487
Fsp4HI GCNGC 5 cut(s) 60, 283, 429, 569, 673
FspBI CTAG 3 cut(s) 495, 641, 755
GlaI GCGC 2 cut(s) 502, 1154
GluI GCNGC 5 cut(s) 60, 283, 429, 569, 673
GsaI CCCAGC 1 cut(s) 1023
HaeII RGCGCY 2 cut(s) 504, 1156
HaeIII GGCC 4 cut(s) 403, 571, 742, 1033
HapII CCGG 1 cut(s) 532
HhaI GCGC 2 cut(s) 503, 1155
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 1 cut(s) 724
Hin6I GCGC 2 cut(s) 501, 1153
HinP1I GCGC 2 cut(s) 501, 1153
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 4 cut(s) 5, 213, 947, 978
HpaII CCGG 1 cut(s) 532
HphI GGTGA 3 cut(s) 65, 234, 700
Hpy166II GTNNAC 5 cut(s) 417, 492, 510, 661, 927
Hpy188I TCNGA 3 cut(s) 24, 212, 218
Hpy188III TCNNGA 5 cut(s) 179, 229, 449, 721, 890
Hpy8I GTNNAC 5 cut(s) 417, 492, 510, 661, 927
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 5 cut(s) 39, 256, 414, 662, 1241
HpyCH4III ACNGT 5 cut(s) 147, 173, 799, 1090, 1228
HpyCH4IV ACGT 2 cut(s) 34, 556
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 126, 343, 359, 428, 507
HpyF3I CTNAG 7 cut(s) 209, 215, 303, 342, 354, 1004, 1105
HpySE526I ACGT 2 cut(s) 34, 556
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 1 cut(s) 724
HspAI GCGC 2 cut(s) 501, 1153
KasI GGCGCC 1 cut(s) 500
Kzo9I GATC 6 cut(s) 205, 218, 315, 378, 520, 814
LmnI GCTCC 2 cut(s) 482, 834
Lsp1109I GCAGC 3 cut(s) 71, 415, 659
LweI GCATC 2 cut(s) 71, 1193
MaeI CTAG 3 cut(s) 495, 641, 755
MaeII ACGT 2 cut(s) 34, 556
MaeIII GTNAC 1 cut(s) 191
MalI GATC 6 cut(s) 207, 220, 317, 380, 522, 816
MboI GATC 6 cut(s) 205, 218, 315, 378, 520, 814
MboII GAAGA 5 cut(s) 46, 57, 231, 736, 911
MfeI CAATTG 1 cut(s) 626
MhlI GDGCHC 5 cut(s) 155, 236, 487, 512, 831
MluCI AATT 7 cut(s) 78, 626, 664, 702, 769, 938, 1067
Mly113I GGCGCC 1 cut(s) 501
MlyI GAGTC 3 cut(s) 14, 207, 941
MnlI CCTC 9 cut(s) 62, 298, 377, 514, 582, 726, 753, 1013, 1114
Mph1103I ATGCAT 1 cut(s) 1045
MseI TTAA 3 cut(s) 768, 921, 1092
MspA1I CMGCKG 2 cut(s) 282, 1109
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 3 cut(s) 388, 438, 533
MunI CAATTG 1 cut(s) 626
MvaI CCWGG 2 cut(s) 388, 438
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 6 cut(s) 117, 126, 343, 359, 428, 507
NarI GGCGCC 1 cut(s) 501
NciI CCSGG 1 cut(s) 533
NdeII GATC 6 cut(s) 205, 218, 315, 378, 520, 814
NlaIII CATG 1 cut(s) 724
NlaIV GGNNCC 4 cut(s) 49, 385, 502, 698
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 1045
PaeR7I CTCGAG 1 cut(s) 229
PagI TCATGA 1 cut(s) 720
PcsI WCGNNNNNNNCGW 2 cut(s) 227, 366
PfeI GAWTC 1 cut(s) 978
PflMI CCANNNNNTGG 1 cut(s) 960
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 5 cut(s) 61, 284, 430, 570, 674
Ple19I CGATCG 1 cut(s) 381
PleI GAGTC 3 cut(s) 13, 207, 941
PluTI GGCGCC 1 cut(s) 504
PpsI GAGTC 3 cut(s) 13, 207, 941
PshAI GACNNNNGTC 1 cut(s) 863
PshBI ATTAAT 1 cut(s) 768
Psp124BI GAGCTC 2 cut(s) 236, 487
Psp6I CCWGG 2 cut(s) 386, 436
PspFI CCCAGC 1 cut(s) 1019
PspGI CCWGG 2 cut(s) 386, 436
PspN4I GGNNCC 4 cut(s) 49, 385, 502, 698
PstI CTGCAG 1 cut(s) 850
PvuI CGATCG 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 6 cut(s) 224, 326, 559, 839, 1037, 1127
RsaNI GTAC 6 cut(s) 223, 325, 558, 838, 1036, 1126
SacI GAGCTC 2 cut(s) 236, 487
SaqAI TTAA 3 cut(s) 768, 921, 1092
SatI GCNGC 5 cut(s) 60, 283, 429, 569, 673
Sau3AI GATC 6 cut(s) 205, 218, 315, 378, 520, 814
SchI GAGTC 3 cut(s) 14, 207, 941
ScrFI CCNGG 3 cut(s) 388, 438, 533
SduI GDGCHC 5 cut(s) 155, 236, 487, 512, 831
SfaNI GCATC 2 cut(s) 71, 1193
SfcI CTRYAG 1 cut(s) 846
SfoI GGCGCC 1 cut(s) 502
Sfr274I CTCGAG 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 229
SmlI CTYRAG 3 cut(s) 229, 744, 988
SmoI CTYRAG 3 cut(s) 229, 744, 988
Sse9I AATT 7 cut(s) 78, 626, 664, 702, 769, 938, 1067
SsiI CCGC 4 cut(s) 127, 282, 364, 568
SspDI GGCGCC 1 cut(s) 500
SspMI CTAG 3 cut(s) 495, 641, 755
SstI GAGCTC 2 cut(s) 236, 487
StyD4I CCNGG 3 cut(s) 386, 436, 531
TaaI ACNGT 5 cut(s) 147, 173, 799, 1090, 1228
TaiI ACGT 2 cut(s) 37, 559
TaqI TCGA 5 cut(s) 204, 230, 318, 369, 1137
TasI AATT 7 cut(s) 78, 626, 664, 702, 769, 938, 1067
TatI WGTACW 2 cut(s) 837, 1125
TauI GCSGC 2 cut(s) 285, 571
TfiI GAWTC 1 cut(s) 978
Tru1I TTAA 3 cut(s) 768, 921, 1092
Tru9I TTAA 3 cut(s) 768, 921, 1092
TscAI CASTG 5 cut(s) 106, 176, 429, 1012, 1231
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 59, 428, 672
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 6 cut(s) 303, 678, 737, 1089, 1154, 1180
TspRI CASTG 5 cut(s) 106, 176, 429, 1012, 1231
Van91I CCANNNNNTGG 1 cut(s) 960
VneI GTGCAC 1 cut(s) 508
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 1 cut(s) 938
XhoI CTCGAG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 926
XspI CTAG 3 cut(s) 495, 641, 755
Zsp2I ATGCAT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.