Rw4G037120

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001284
Physical Location & Seq
Reverse (-)
63845165 .. 63848064
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037120.1

Sequence Viewer

Length: 1191 bp
ATGACGTCGTTTCGGCTGCTGTCTCGGGCATCGCGTAGGCTTCTGAAGCCTTCACACTGTTGCGCCCATCTCTCTGCCTATCAGGCAACCACAACCACAACCACCACCACCACCAAATCGAACCCTAAAGAAATCCCTTTGATCCCATTTAATCCCAGGCACCGTTGGATTCCCAGTTATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCGACCTCGTCTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTTCCCAGGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGCATTTTTTTGTTAAAATTAATGGTATGAGATACATGCTTGTTGGTTTGTGCTGGTCAATAACACTGGCAGCAAGCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGGGGGCGGATGTACCCTGTAATTCAGGTGGAACGTACAAAGTTGCGGCCAGTTGCGAGTGGTCTTTTAACACCTTTTAAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCTCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTTGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATCAAAGGAAGCATTGATCCAGCTATAGTACTCCCATTGTACATTTCTGGCGTATTTTGGACACTTGTGTATGATACGATATATGCACATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAAGGGATTACTGGGTTTGGAATCCTATGCATCAGTAGTCTTGCGCTCAGTGGATATAATGCCGAAATTGGCTGGCCATATTATGCACTTTTGGCAGTTGCATCTGGACAATTAGCTTGGCAGATATGGACAGTTGACCTTTCATCCAGGCTTGATTGCAATGGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGCAATATTATTGGGAAGACTGCCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

396

Amino Acids

44.02

Weight (kDa)

9.6

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 182 - 375 4.8e-43 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 159, 350
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 310, 526, 565, 927
AclWI GGATC 3 cut(s) 136, 290, 806
AcoI YGGCCR 2 cut(s) 566, 1028
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 2 cut(s) 65, 926
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 533, 556, 825, 836
AfiI CCNNNNNNNGG 4 cut(s) 599, 676, 768, 933
AgsI TTSAA 2 cut(s) 623, 948
AjnI CCWGG 5 cut(s) 155, 299, 353, 457, 1100
AluBI AGCT 5 cut(s) 275, 325, 776, 818, 1070
AluI AGCT 5 cut(s) 275, 325, 776, 818, 1070
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 136, 290, 806
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 5 cut(s) 306, 368, 566, 737, 1028
ApeKI GCWGC 3 cut(s) 16, 449, 791
ApoI RAATTY 1 cut(s) 642
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 3 cut(s) 65, 208, 1000
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 953
AvaI CYCGRG 1 cut(s) 24
BalI TGGCCA 1 cut(s) 1030
BanI GGYRCC 2 cut(s) 159, 350
BbsI GAAGAC 2 cut(s) 216, 1183
BbvI GCAGC 3 cut(s) 3, 461, 778
BccI CCATC 2 cut(s) 75, 780
BceAI ACGGC 1 cut(s) 654
BciT130I CCWGG 5 cut(s) 157, 301, 355, 459, 1102
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 698
BfmI CTRYAG 1 cut(s) 819
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 4 cut(s) 17, 450, 566, 792
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 4 cut(s) 18, 451, 567, 793
BmcAI AGTACT 1 cut(s) 825
Bme1390I CCNGG 5 cut(s) 157, 301, 355, 459, 1102
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 161, 352
BmrFI CCNGG 5 cut(s) 157, 301, 355, 459, 1102
BmrI ACTGGG 3 cut(s) 168, 778, 975
BmsI GCATC 3 cut(s) 38, 993, 1064
BmuI ACTGGG 3 cut(s) 168, 778, 975
BpiI GAAGAC 2 cut(s) 216, 1183
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 155, 299, 457, 751
Bsc4I CCNNNNNNNGG 4 cut(s) 599, 676, 768, 933
Bse1I ACTGG 5 cut(s) 174, 450, 569, 773, 970
Bse3DI GCAATG 1 cut(s) 1120
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 5 cut(s) 157, 301, 355, 459, 1102
BseDI CCNNGG 4 cut(s) 155, 299, 457, 751
BseGI GGATG 4 cut(s) 503, 534, 791, 1097
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 4 cut(s) 599, 676, 768, 933
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 2 cut(s) 208, 1015
BseNI ACTGG 5 cut(s) 174, 450, 569, 773, 970
BseRI GAGGAG 1 cut(s) 638
BseXI GCAGC 3 cut(s) 3, 461, 778
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 5 cut(s) 308, 370, 568, 739, 1030
BshNI GGYRCC 2 cut(s) 159, 350
BsiHKCI CYCGRG 1 cut(s) 24
BslI CCNNNNNNNGG 4 cut(s) 599, 676, 768, 933
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 5 cut(s) 308, 370, 568, 739, 1030
BsoBI CYCGRG 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 834
Bsp143I GATC 5 cut(s) 141, 190, 282, 811, 901
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 4 cut(s) 310, 526, 565, 927
BspANI GGCC 5 cut(s) 308, 370, 568, 739, 1030
BspCNI CTCAG 2 cut(s) 207, 1014
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 161, 352
BspPI GGATC 3 cut(s) 136, 290, 806
BspT107I GGYRCC 2 cut(s) 159, 350
BsrDI GCAATG 1 cut(s) 1120
BsrGI TGTACA 1 cut(s) 834
BsrI ACTGG 5 cut(s) 174, 450, 569, 773, 970
BssECI CCNNGG 4 cut(s) 155, 299, 457, 751
BssMI GATC 5 cut(s) 141, 190, 282, 811, 901
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 751
Bst2UI CCWGG 5 cut(s) 157, 301, 355, 459, 1102
Bst4CI ACNGT 3 cut(s) 59, 164, 1087
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 834
BstC8I GCNNGC 7 cut(s) 306, 310, 327, 331, 363, 454, 1028
BstDEI CTNAG 3 cut(s) 194, 321, 1001
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 4 cut(s) 503, 534, 791, 1097
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 3 cut(s) 65, 208, 1000
BstKTI GATC 5 cut(s) 144, 193, 285, 814, 904
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 5 cut(s) 141, 190, 282, 811, 901
BstMWI GCNNNNNNNGC 6 cut(s) 46, 83, 205, 326, 367, 1046
BstNI CCWGG 5 cut(s) 157, 301, 355, 459, 1102
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 5 cut(s) 155, 299, 353, 457, 1100
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 3, 461, 778
BstV2I GAAGAC 2 cut(s) 216, 1183
BsuRI GGCC 5 cut(s) 308, 370, 568, 739, 1030
BtgZI GCGATG 2 cut(s) 15, 270
BtsCI GGATG 4 cut(s) 503, 534, 791, 1097
BtsI GCAGTG 1 cut(s) 1165
BtsIMutI CAGTG 4 cut(s) 55, 443, 1009, 1165
Cac8I GCNNGC 7 cut(s) 306, 310, 327, 331, 363, 454, 1028
CciI TCATGA 1 cut(s) 717
CfoI GCGC 3 cut(s) 65, 208, 1000
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 353
Csp6I GTAC 4 cut(s) 532, 555, 824, 835
CviAII CATG 2 cut(s) 415, 718
CviQI GTAC 4 cut(s) 532, 555, 824, 835
DdeI CTNAG 3 cut(s) 194, 321, 1001
DpnI GATC 5 cut(s) 143, 192, 284, 813, 903
DpnII GATC 5 cut(s) 141, 190, 282, 811, 901
DraI TTTAAA 1 cut(s) 598
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 566, 1028
EciI GGCGGA 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 751
Eco57I CTGAAG 2 cut(s) 65, 926
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 5 cut(s) 155, 299, 353, 457, 1100
EcoT14I CCWWGG 1 cut(s) 751
EcoT22I ATGCAT 1 cut(s) 986
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 2 cut(s) 418, 721
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FatI CATG 2 cut(s) 414, 717
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 4 cut(s) 17, 450, 566, 792
FokI GGATG 4 cut(s) 510, 541, 798, 1084
Fsp4HI GCNGC 4 cut(s) 17, 450, 566, 792
FspBI CTAG 1 cut(s) 698
GlaI GCGC 3 cut(s) 64, 207, 999
GluI GCNGC 4 cut(s) 17, 450, 566, 792
HaeIII GGCC 5 cut(s) 308, 370, 568, 739, 1030
HgaI GACGC 1 cut(s) 296
HhaI GCGC 3 cut(s) 65, 208, 1000
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 418, 721
Hin6I GCGC 3 cut(s) 63, 206, 998
HinP1I GCGC 3 cut(s) 63, 206, 998
HincII GTYRAC 3 cut(s) 486, 729, 1090
HindII GTYRAC 3 cut(s) 486, 729, 1090
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 4 cut(s) 169, 185, 944, 975
HphI GGTGA 1 cut(s) 953
Hpy166II GTNNAC 3 cut(s) 486, 729, 1090
Hpy188I TCNGA 4 cut(s) 45, 190, 617, 906
Hpy188III TCNNGA 5 cut(s) 182, 470, 718, 887, 1059
Hpy8I GTNNAC 3 cut(s) 486, 729, 1090
Hpy99I CGWCG 2 cut(s) 10, 290
HpyAV CCTTC 4 cut(s) 60, 476, 901, 950
HpyCH4III ACNGT 3 cut(s) 59, 164, 1087
HpyCH4IV ACGT 2 cut(s) 5, 553
HpyCH4V TGCA 8 cut(s) 794, 881, 984, 1040, 1055, 1113, 1158, 1163
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 83, 205, 326, 367, 1046
HpyF3I CTNAG 3 cut(s) 194, 321, 1001
HpySE526I ACGT 2 cut(s) 5, 553
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 418, 721
HspAI GCGC 3 cut(s) 63, 206, 998
Kzo9I GATC 5 cut(s) 141, 190, 282, 811, 901
LmnI GCTCC 1 cut(s) 773
Lsp1109I GCAGC 3 cut(s) 3, 461, 778
LweI GCATC 3 cut(s) 38, 993, 1064
MabI ACCWGGT 1 cut(s) 353
MaeI CTAG 1 cut(s) 698
MaeII ACGT 2 cut(s) 5, 553
MalI GATC 5 cut(s) 143, 192, 284, 813, 903
MboI GATC 5 cut(s) 141, 190, 282, 811, 901
MboII GAAGA 3 cut(s) 216, 908, 1188
MfeI CAATTG 1 cut(s) 623
MlsI TGGCCA 1 cut(s) 1030
MluCI AATT 7 cut(s) 396, 540, 623, 642, 661, 1020, 1064
MluNI TGGCCA 1 cut(s) 1030
MmeI TCCRAC 2 cut(s) 146, 676
MnlI CCTC 6 cut(s) 229, 344, 659, 723, 750, 927
Mox20I TGGCCA 1 cut(s) 1030
Mph1103I ATGCAT 1 cut(s) 986
MscI TGGCCA 1 cut(s) 1030
MseI TTAA 8 cut(s) 150, 393, 399, 477, 515, 587, 597, 765
Msp20I TGGCCA 1 cut(s) 1030
MspR9I CCNGG 5 cut(s) 157, 301, 355, 459, 1102
MunI CAATTG 1 cut(s) 623
MvaI CCWGG 5 cut(s) 157, 301, 355, 459, 1102
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 6 cut(s) 46, 83, 205, 326, 367, 1046
NdeII GATC 5 cut(s) 141, 190, 282, 811, 901
NlaIII CATG 2 cut(s) 418, 721
NlaIV GGNNCC 2 cut(s) 161, 352
NsiI ATGCAT 1 cut(s) 986
NspI RCATGY 1 cut(s) 418
PagI TCATGA 1 cut(s) 717
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 227
PfeI GAWTC 4 cut(s) 169, 185, 944, 975
PflFI GACNNNGTC 1 cut(s) 220
PkrI GCNGC 4 cut(s) 18, 451, 567, 793
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 5 cut(s) 155, 299, 353, 457, 1100
PspGI CCWGG 5 cut(s) 155, 299, 353, 457, 1100
PspN4I GGNNCC 2 cut(s) 161, 352
PspPI GGNCC 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 4 cut(s) 533, 556, 825, 836
RsaNI GTAC 4 cut(s) 532, 555, 824, 835
SaqAI TTAA 8 cut(s) 150, 393, 399, 477, 515, 587, 597, 765
SatI GCNGC 4 cut(s) 17, 450, 566, 792
Sau3AI GATC 5 cut(s) 141, 190, 282, 811, 901
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 825
ScrFI CCNGG 5 cut(s) 157, 301, 355, 459, 1102
SexAI ACCWGGT 1 cut(s) 353
SfaNI GCATC 3 cut(s) 38, 993, 1064
SfcI CTRYAG 1 cut(s) 819
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 7 cut(s) 396, 540, 623, 642, 661, 1020, 1064
SsiI CCGC 4 cut(s) 310, 526, 565, 927
SspI AATATT 1 cut(s) 1167
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 5 cut(s) 155, 299, 353, 457, 1100
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 3 cut(s) 59, 164, 1087
TaiI ACGT 2 cut(s) 8, 556
TaqI TCGA 6 cut(s) 119, 215, 230, 285, 336, 1130
TasI AATT 7 cut(s) 396, 540, 623, 642, 661, 1020, 1064
TatI WGTACW 2 cut(s) 823, 834
TauI GCSGC 1 cut(s) 568
TfiI GAWTC 4 cut(s) 169, 185, 944, 975
Tru1I TTAA 8 cut(s) 150, 393, 399, 477, 515, 587, 597, 765
Tru9I TTAA 8 cut(s) 150, 393, 399, 477, 515, 587, 597, 765
TscAI CASTG 4 cut(s) 62, 450, 1009, 1165
TseI GCWGC 3 cut(s) 16, 449, 791
TspDTI ATGAA 3 cut(s) 216, 734, 1086
TspRI CASTG 4 cut(s) 62, 450, 1009, 1165
Tth111I GACNNNGTC 1 cut(s) 220
VspI ATTAAT 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 1 cut(s) 642
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 698
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.