Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000144.1

Orthogroup ID

OG0001284

Physical Location & Seq

Genomic Coordinates Forward (+)

28874 .. 30069

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000144.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgaaaaggttgacattctggcctcaagcataccttggtttgacctttaactggggagctttgttaggatgggctgcaatcaaaggaagcattgatccagctatagtactcccattgtacatttctggcgtattttggacacttgtgtatgatacgatatatgcacatcaggataaagaagatgatctgaaggttggtgtcaaatctaccgctttgaggtttggtgattcaacaaaggaagggattactgggtttggaatcctatgcatcagtagtcttgcgctcagtggatataatgccgaaattggctggccatattatgcacttttggcagttgcatctggacaattagcttggcagatatggacagttgacctttcatccaggcttgattgcaatggaaagtttgtgtcgaacaagtggtttggtgctattatttgcagtgcaatattattgggaagactgccatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

157

Amino Acids

17.23

Weight (kDa)

7.67

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23660 AT4G23660 AT4G23660 AT4G23660 AT4G23660
fragaria_vesca	FvH4_4g36840 FvH4_4g36840 FvH4_4g36840 FvH4_4g36840 FvH4_4g36840 FvH4_4g36840 FvH4_4g36840
malus_domestica	MD11G1112600.v1.1 MD11G1112700.v1.1 MD15G1355200.v1.1 MD16G1001300.v1.1
prunus_persica	Prupe.1G346400_v2.0.a1 Prupe.1G346500_v2.0.a1 Prupe.4G276200_v2.0.a1 Prupe.4G276200_v2.0.a1 Prupe.4G276200_v2.0.a1 Prupe.4G276200_v2.0.a1 Prupe.4G276200_v2.0.a1 Prupe.4G276200_v2.0.a1
pyrus_communis	pycom11g09450 pycom11g09460 pycom15g32570
rosa_chinensis	RchiOBHm_Chr4g0446591 RchiOBHm_Chr5g0044851 RchiOBHm_Chr5g0044921
rosa_laevigata	RLG00000005648 RLG00000034302 RLG00000034305 RLG00000034315
rosa_multiflora	Rmu_co8375563.1_g000001 Rmu_sc0004567.1_g000019 Rmu_sc0018477.1_g000004 Rmu_ssc0000144.1_g000005
rosa_roxburghii	Rroxscaffold_1G00036190 Rroxscaffold_5G00386980
rosa_rugosa	Rorug04G0372500 Rorug04G0372600 Rorug05G0219400 Rorug05G0219700
rosa_samantha	Rh4AG434200 Rh4BG443400 Rh4CG460700 Rh4DG442200 Rh5AG301200 Rh5BG308400 Rh5CG335300 Rh5DG318600
rosa_wichuraiana	Rw4G037120 Rw5G027920 Rw5G027950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	108, 119
AfiI	CCNNNNNNNGG	2 cut(s)	51, 216
AgsI	TTSAA	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	59, 101, 353
AluI	AGCT	3 cut(s)	59, 101, 353
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	20, 311
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	385
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	385
BmrI	ACTGGG	2 cut(s)	61, 258
BmsI	GCATC	2 cut(s)	276, 347
BmuI	ACTGGG	2 cut(s)	61, 258
BpiI	GAAGAC	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 216
Bse1I	ACTGG	2 cut(s)	56, 253
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	74, 380
BseLI	CCNNNNNNNGG	2 cut(s)	51, 216
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	2 cut(s)	56, 253
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	22, 313
BslI	CCNNNNNNNGG	2 cut(s)	51, 216
BsnI	GGCC	2 cut(s)	22, 313
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	94, 184
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	22, 313
BspCNI	CTCAG	1 cut(s)	297
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	403
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	56, 253
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	2 cut(s)	94, 184
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	74, 380
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	97, 187
BstMBI	GATC	2 cut(s)	94, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	22, 313
BtsCI	GGATG	2 cut(s)	74, 380
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	292, 448
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	107, 118
CviJI	RGCY	8 cut(s)	22, 59, 74, 101, 309, 313, 353, 388
CviKI_1	RGCY	8 cut(s)	22, 59, 74, 101, 309, 313, 353, 388
CviQI	GTAC	2 cut(s)	107, 118
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	2 cut(s)	96, 186
DpnII	GATC	2 cut(s)	94, 184
EaeI	YGGCCR	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	34
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	81, 367
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	22, 313
HhaI	GCGC	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	2 cut(s)	12, 373
HindII	GTYRAC	2 cut(s)	12, 373
HinfI	GANTC	2 cut(s)	227, 258
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	12, 373
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	170, 342
Hpy8I	GTNNAC	2 cut(s)	12, 373
HpyAV	CCTTC	2 cut(s)	184, 233
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	8 cut(s)	77, 164, 267, 323, 338, 396, 441, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	94, 184
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	276, 347
MalI	GATC	2 cut(s)	96, 186
MboI	GATC	2 cut(s)	94, 184
MboII	GAAGA	2 cut(s)	191, 471
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	2 cut(s)	303, 347
MluNI	TGGCCA	1 cut(s)	313
MnlI	CCTC	2 cut(s)	33, 210
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	2 cut(s)	94, 184
NsiI	ATGCAT	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	227, 258
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	108, 119
RsaNI	GTAC	2 cut(s)	107, 118
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	94, 184
ScaI	AGTACT	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	385
SetI	ASST	9 cut(s)	11, 36, 47, 61, 103, 195, 221, 355, 378
SfaNI	GCATC	2 cut(s)	276, 347
SfcI	CTRYAG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	303, 347
SsiI	CCGC	1 cut(s)	210
SspI	AATATT	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	413
TasI	AATT	2 cut(s)	303, 347
TatI	WGTACW	2 cut(s)	106, 117
TfiI	GAWTC	2 cut(s)	227, 258
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	292, 448
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	17, 369
TspRI	CASTG	2 cut(s)	292, 448
ZrmI	AGTACT	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.