Rh5CG335300

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001284
Physical Location & Seq
Reverse (-)
37977141 .. 37980758
3618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG335300.1

Sequence Viewer

Length: 1281 bp
ATGACGTCGTTTCGGCTCTTGTCTCGGGCATCGCGTAGGCTTCTGAAGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCAGTCTCTACCTATCACCCAACCACCAAACCCAGCCCTAAAGAAACGCCTTTCATCCCTTTTAATCTCAGGCACCGTTGGATTCCCGGTTATCATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCCACTTCATCGAACAAGGACGACGACCGGGTCAGCGATGACTCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCCAGGCAGGCTCGCCCTTATGCTAAGCTCGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGCATGTGGTCAATAACATTGGCAGCAACCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGCGCTGGATGTACCGTAAATGATCTCCTTGATCGGGATATTGACACCATGGTGGAACGTACAAAGTTGCGGCCAGTTGCGAGTGGTATTTTGACACCTTTTAAAGGGTTGTGTTTTCTTGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCTCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTAGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATTAAAGGAAGCATTGATCCAGCTATAGTAGTTCCGTTGTACATTTCTGGAGTATTTTGGACACTTGTGTATGATACGATATATGCGCATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCCCTCAGTGGATATAATGCCGAAATTGGTTTTCCCATCCTTTCTTTCTTTTTATATATAATTTATAGGTATATTTTTTATTTACTGTTATTGGAACCTCAGCCTAATTTTTCTTTTTCTTTCTTCTGCCACGCTCAAACTGTCAACCATGGAACAGGCTGGCCATATTATGCACTTTTGGCAGTCGCATCTGGACAATTAGCTTGGCAGATATGGACAGTTGACCTTTCTTCCAGGCTTGATTGCAATAGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGGAATCTTATTGGGAAGACTTTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

426

Amino Acids

47.69

Weight (kDa)

9.35

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 119 - 355 3.1e-54 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 1 cut(s) 8
Acc16I TGCGCA 1 cut(s) 843
AccB1I GGYRCC 2 cut(s) 153, 341
AccII CGCG 1 cut(s) 34
AciI CCGC 2 cut(s) 526, 888
AclWI GGATC 2 cut(s) 281, 767
AcoI YGGCCR 2 cut(s) 527, 1118
AcsI RAATTY 1 cut(s) 603
AcuI CTGAAG 2 cut(s) 65, 887
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 469, 517, 797
AfiI CCNNNNNNNGG 5 cut(s) 490, 560, 637, 729, 894
AgsI TTSAA 2 cut(s) 584, 909
AjnI CCWGG 4 cut(s) 290, 344, 394, 1190
AleI CACNNNNGTG 1 cut(s) 506
AluBI AGCT 5 cut(s) 266, 316, 737, 779, 1160
AluI AGCT 5 cut(s) 266, 316, 737, 779, 1160
Alw26I GTCTC 2 cut(s) 27, 91
AlwI GGATC 2 cut(s) 281, 767
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 4 cut(s) 359, 527, 698, 1118
ApeKI GCWGC 3 cut(s) 80, 386, 752
ApoI RAATTY 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 1270
AspA2I CCTAGG 1 cut(s) 712
AspLEI GCGC 3 cut(s) 205, 461, 844
AsuC2I CCSGG 2 cut(s) 168, 239
AsuHPI GGTGA 2 cut(s) 89, 914
AvaI CYCGRG 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 712
BalI TGGCCA 1 cut(s) 1120
BanI GGYRCC 2 cut(s) 153, 341
BbsI GAAGAC 1 cut(s) 1273
BbvCI CCTCAGC 1 cut(s) 1056
BbvI GCAGC 3 cut(s) 67, 398, 739
BccI CCATC 3 cut(s) 78, 741, 1001
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 4 cut(s) 292, 346, 396, 1192
BcnI CCSGG 2 cut(s) 168, 239
BcoDI GTCTC 2 cut(s) 27, 91
BfaI CTAG 2 cut(s) 659, 713
BfmI CTRYAG 2 cut(s) 81, 780
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 4 cut(s) 81, 387, 527, 753
BlnI CCTAGG 1 cut(s) 712
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 4 cut(s) 82, 388, 528, 754
Bme1390I CCNGG 6 cut(s) 168, 239, 292, 346, 396, 1192
BmeT110I CYCGRG 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 155, 343, 1053
BmrFI CCNGG 6 cut(s) 168, 239, 292, 346, 396, 1192
BmrI ACTGGG 2 cut(s) 739, 936
BmsI GCATC 4 cut(s) 38, 853, 954, 1154
BmuI ACTGGG 2 cut(s) 739, 936
BpiI GAAGAC 1 cut(s) 1273
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 1056
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 687
BpuMI CCSGG 2 cut(s) 168, 239
BsaBI GATNNNNATC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 290, 394, 504, 712, 1105
Bsc4I CCNNNNNNNGG 5 cut(s) 490, 560, 637, 729, 894
Bse1I ACTGG 3 cut(s) 530, 734, 931
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 4 cut(s) 292, 346, 396, 1192
BseDI CCNNGG 5 cut(s) 290, 394, 504, 712, 1105
BseGI GGATG 5 cut(s) 135, 440, 470, 752, 993
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 5 cut(s) 490, 560, 637, 729, 894
BseMII CTCAG 4 cut(s) 163, 205, 976, 1070
BseNI ACTGG 3 cut(s) 530, 734, 931
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 3 cut(s) 67, 398, 739
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 4 cut(s) 361, 529, 700, 1120
BshNI GGYRCC 2 cut(s) 153, 341
BsiEI CGRYCG 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 168, 238
BslI CCNNNNNNNGG 5 cut(s) 490, 560, 637, 729, 894
BsmAI GTCTC 2 cut(s) 27, 91
BsnI GGCC 4 cut(s) 361, 529, 700, 1120
BsoBI CYCGRG 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 6 cut(s) 187, 273, 478, 487, 772, 862
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 2 cut(s) 504, 1105
BspACI CCGC 2 cut(s) 526, 888
BspANI GGCC 4 cut(s) 361, 529, 700, 1120
BspCNI CTCAG 4 cut(s) 162, 204, 975, 1069
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 678
BspLI GGNNCC 3 cut(s) 155, 343, 1053
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 2 cut(s) 281, 767
BspT107I GGYRCC 2 cut(s) 153, 341
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 3 cut(s) 530, 734, 931
BssECI CCNNGG 5 cut(s) 290, 394, 504, 712, 1105
BssMI GATC 6 cut(s) 187, 273, 478, 487, 772, 862
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 504, 712, 1105
Bst2UI CCWGG 4 cut(s) 292, 346, 396, 1192
Bst4CI ACNGT 5 cut(s) 158, 472, 1044, 1099, 1177
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 795
BstC8I GCNNGC 6 cut(s) 297, 301, 318, 322, 354, 1118
BstDEI CTNAG 5 cut(s) 149, 191, 312, 962, 1056
BstDSI CCRYGG 2 cut(s) 504, 1105
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 5 cut(s) 135, 440, 470, 752, 993
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 3 cut(s) 205, 461, 844
BstKTI GATC 6 cut(s) 190, 276, 481, 490, 775, 865
BstMAI GTCTC 2 cut(s) 27, 91
BstMBI GATC 6 cut(s) 187, 273, 478, 487, 772, 862
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 5 cut(s) 46, 202, 317, 358, 1136
BstNI CCWGG 4 cut(s) 292, 346, 396, 1192
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 6 cut(s) 166, 237, 290, 344, 394, 1190
BstSFI CTRYAG 2 cut(s) 81, 780
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 67, 398, 739
BstV2I GAAGAC 1 cut(s) 1273
BsuRI GGCC 4 cut(s) 361, 529, 700, 1120
BtgI CCRYGG 2 cut(s) 504, 1105
BtgZI GCGATG 2 cut(s) 15, 261
BtsCI GGATG 5 cut(s) 135, 440, 470, 752, 993
BtsI GCAGTG 1 cut(s) 1255
BtsIMutI CAGTG 2 cut(s) 970, 1255
Cac8I GCNNGC 6 cut(s) 297, 301, 318, 322, 354, 1118
CciI TCATGA 1 cut(s) 678
CfoI GCGC 3 cut(s) 205, 461, 844
CseI GACGC 1 cut(s) 287
CsiI ACCWGGT 1 cut(s) 344
Csp6I GTAC 3 cut(s) 468, 516, 796
CviAII CATG 4 cut(s) 367, 505, 679, 1106
CviQI GTAC 3 cut(s) 468, 516, 796
DdeI CTNAG 5 cut(s) 149, 191, 312, 962, 1056
DpnI GATC 6 cut(s) 189, 275, 480, 489, 774, 864
DpnII GATC 6 cut(s) 187, 273, 478, 487, 772, 862
DraI TTTAAA 1 cut(s) 559
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 2 cut(s) 527, 1118
Eco130I CCWWGG 3 cut(s) 504, 712, 1105
Eco57I CTGAAG 2 cut(s) 65, 887
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 4 cut(s) 290, 344, 394, 1190
EcoT14I CCWWGG 3 cut(s) 504, 712, 1105
ErhI CCWWGG 3 cut(s) 504, 712, 1105
FaeI CATG 4 cut(s) 370, 508, 682, 1109
FatI CATG 4 cut(s) 366, 504, 678, 1105
Fnu4HI GCNGC 4 cut(s) 81, 387, 527, 753
FokI GGATG 5 cut(s) 122, 447, 477, 759, 980
Fsp4HI GCNGC 4 cut(s) 81, 387, 527, 753
FspAI RTGCGCAY 1 cut(s) 843
FspBI CTAG 2 cut(s) 659, 713
FspI TGCGCA 1 cut(s) 843
GlaI GCGC 3 cut(s) 204, 460, 843
GluI GCNGC 4 cut(s) 81, 387, 527, 753
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 4 cut(s) 361, 529, 700, 1120
HapII CCGG 2 cut(s) 168, 238
HgaI GACGC 1 cut(s) 287
HhaI GCGC 3 cut(s) 205, 461, 844
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 370, 508, 682, 1109
Hin6I GCGC 3 cut(s) 203, 459, 842
HinP1I GCGC 3 cut(s) 203, 459, 842
HincII GTYRAC 4 cut(s) 423, 690, 1102, 1180
HindII GTYRAC 4 cut(s) 423, 690, 1102, 1180
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 6 cut(s) 163, 182, 251, 905, 936, 1254
HpaII CCGG 2 cut(s) 168, 238
HphI GGTGA 2 cut(s) 89, 914
Hpy166II GTNNAC 4 cut(s) 423, 690, 1102, 1180
Hpy188I TCNGA 3 cut(s) 45, 187, 867
Hpy188III TCNNGA 7 cut(s) 179, 407, 491, 679, 804, 848, 1149
Hpy8I GTNNAC 4 cut(s) 423, 690, 1102, 1180
Hpy99I CGWCG 3 cut(s) 10, 236, 281
HpyAV CCTTC 3 cut(s) 63, 413, 862
HpyCH4III ACNGT 5 cut(s) 158, 472, 1044, 1099, 1177
HpyCH4IV ACGT 2 cut(s) 5, 514
HpyCH4V TGCA 7 cut(s) 83, 366, 755, 945, 1130, 1203, 1248
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 202, 317, 358, 1136
HpyF3I CTNAG 5 cut(s) 149, 191, 312, 962, 1056
HpySE526I ACGT 2 cut(s) 5, 514
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 370, 508, 682, 1109
HspAI GCGC 3 cut(s) 203, 459, 842
Kzo9I GATC 6 cut(s) 187, 273, 478, 487, 772, 862
LmnI GCTCC 2 cut(s) 71, 734
Lsp1109I GCAGC 3 cut(s) 67, 398, 739
LweI GCATC 4 cut(s) 38, 853, 954, 1154
MabI ACCWGGT 1 cut(s) 344
MaeI CTAG 2 cut(s) 659, 713
MaeII ACGT 2 cut(s) 5, 514
MalI GATC 6 cut(s) 189, 275, 480, 489, 774, 864
MboI GATC 6 cut(s) 187, 273, 478, 487, 772, 862
MboII GAAGA 4 cut(s) 869, 1072, 1179, 1278
MfeI CAATTG 1 cut(s) 584
MlsI TGGCCA 1 cut(s) 1120
MluCI AATT 8 cut(s) 584, 603, 622, 756, 981, 1017, 1063, 1154
MluNI TGGCCA 1 cut(s) 1120
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 140, 637
MnlI CCTC 8 cut(s) 60, 335, 620, 684, 711, 888, 971, 1065
Mox20I TGGCCA 1 cut(s) 1120
MroXI GAANNNNTTC 1 cut(s) 1270
MscI TGGCCA 1 cut(s) 1120
MseI TTAA 6 cut(s) 144, 414, 452, 558, 726, 759
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 1120
MspI CCGG 2 cut(s) 168, 238
MspR9I CCNGG 6 cut(s) 168, 239, 292, 346, 396, 1192
MunI CAATTG 1 cut(s) 584
MvaI CCWGG 4 cut(s) 292, 346, 396, 1192
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 46, 202, 317, 358, 1136
NciI CCSGG 2 cut(s) 168, 239
NcoI CCATGG 2 cut(s) 504, 1105
NdeII GATC 6 cut(s) 187, 273, 478, 487, 772, 862
NlaIII CATG 4 cut(s) 370, 508, 682, 1109
NlaIV GGNNCC 3 cut(s) 155, 343, 1053
NsbI TGCGCA 1 cut(s) 843
NspI RCATGY 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 506
PagI TCATGA 1 cut(s) 678
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 324
PdmI GAANNNNTTC 1 cut(s) 1270
PfeI GAWTC 5 cut(s) 163, 182, 905, 936, 1254
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 4 cut(s) 82, 388, 528, 754
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 4 cut(s) 290, 344, 394, 1190
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 4 cut(s) 290, 344, 394, 1190
PspN4I GGNNCC 3 cut(s) 155, 343, 1053
PstI CTGCAG 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 3 cut(s) 469, 517, 797
RsaNI GTAC 3 cut(s) 468, 516, 796
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 6 cut(s) 144, 414, 452, 558, 726, 759
SatI GCNGC 4 cut(s) 81, 387, 527, 753
Sau3AI GATC 6 cut(s) 187, 273, 478, 487, 772, 862
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 6 cut(s) 168, 239, 292, 346, 396, 1192
SexAI ACCWGGT 1 cut(s) 344
SfaNI GCATC 4 cut(s) 38, 853, 954, 1154
SfcI CTRYAG 2 cut(s) 81, 780
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
Sse9I AATT 8 cut(s) 584, 603, 622, 756, 981, 1017, 1063, 1154
SsiI CCGC 2 cut(s) 526, 888
SspMI CTAG 2 cut(s) 659, 713
StyD4I CCNGG 6 cut(s) 166, 237, 290, 344, 394, 1190
StyI CCWWGG 3 cut(s) 504, 712, 1105
TaaI ACNGT 5 cut(s) 158, 472, 1044, 1099, 1177
TaiI ACGT 2 cut(s) 8, 517
TaqI TCGA 5 cut(s) 221, 254, 276, 327, 1220
TasI AATT 8 cut(s) 584, 603, 622, 756, 981, 1017, 1063, 1154
TatI WGTACW 1 cut(s) 795
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 5 cut(s) 163, 182, 905, 936, 1254
Tru1I TTAA 6 cut(s) 144, 414, 452, 558, 726, 759
Tru9I TTAA 6 cut(s) 144, 414, 452, 558, 726, 759
TscAI CASTG 2 cut(s) 970, 1255
TseI GCWGC 3 cut(s) 80, 386, 752
TspDTI ATGAA 4 cut(s) 124, 207, 695, 1263
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 2 cut(s) 970, 1255
Tth111I GACNNNGTC 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 1 cut(s) 603
XceI RCATGY 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 1270
XspI CTAG 2 cut(s) 659, 713
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.