RLG00000034315

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001284
Physical Location & Seq
Reverse (-)
40452797 .. 40457531
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034315

Sequence Viewer

Length: 1170 bp
ATGACGTCGTTTCGGCTCTTGTCAGGGGCATCGCGTAGGCCTCCTTCACTCTCTCGCTCCCATCTCTCTGCTGCACTCAAACCCAACCCTAAAGAAACGCCTTTCATTCCATTTCATCTCAGGCACCGTTGGATTCCCAGTTATCATCTTGATTCTGATCCCAGGCTCGCAGCGCACATATGCACTTCATCGCACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCTACGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTCAATAACATTGGCAGCAAGCCCAGGACACCTTCCTGATATTAAGATGTTGACACTACTTGGATTTTGGGCTTTTTTTTTAAGAGGCGCCGCATGTACCATAAATGATATTCTTGATCGAGATATTGACGCCATGGTGGAACGTACAAAGTTGCGGCCAATTGCGAGTGGTCTTTTGACACCTTTTCAAGGGTTGTGTTTTTTCGGATTTCAATTGCTTTTTGTTCTTGGAACTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTATTTTTCTCCTATCCCCTCATGAAAAGATTGACATTCTGGCCTCAAGCATATCTAGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATTAAAGGGCGCATTGATCCAGCTATAGTACTTCCATTGTACATTTCTGGAGTATTTTGGACACTTGTGTATGATACGATATATGCACATCAGGATAAAGAAGATGATCTGAAGATTGGTGTCAAATCTACCGCTTTGAAGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGGCCTCAGTGGATATAATGCCAAAATTGGCTGGCCATATTATGCACTTCTGGCAGTTGCATCTGGACAATTAGCTTGGCAGATATGGACGGTTGACCTTTCATCCAGGCTTGATTGCAATAGAAAGTTTGTGTCGAACAAGTGCATTATTTATACGGCCAAAGTTCAGATGATTGATGGGGTACTGCTAGTTGAATTTGCAAGGAAGATCCCCAAACGGAGGCCGACCTTAAAAAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

390

Amino Acids

43.84

Weight (kDa)

9.7

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 109 - 352 4.5e-58 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 3 cut(s) 123, 311, 428
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 271, 432, 496, 858
AclWI GGATC 4 cut(s) 152, 251, 737, 1129
AcoI YGGCCR 3 cut(s) 497, 959, 1083
AcsI RAATTY 1 cut(s) 1121
AcuI CTGAAG 1 cut(s) 857
AcyI GRCGYC 3 cut(s) 5, 429, 471
AfaI GTAC 5 cut(s) 439, 487, 756, 767, 1110
AfiI CCNNNNNNNGG 5 cut(s) 530, 607, 699, 1146, 1161
AgsI TTSAA 5 cut(s) 530, 554, 865, 879, 1121
AjnI CCWGG 4 cut(s) 161, 314, 364, 1031
AluBI AGCT 5 cut(s) 236, 286, 707, 749, 1001
AluI AGCT 5 cut(s) 236, 286, 707, 749, 1001
AlwI GGATC 4 cut(s) 152, 251, 737, 1129
AoxI GGCC 9 cut(s) 38, 267, 329, 497, 668, 928, 959, 1083, 1148
ApeKI GCWGC 4 cut(s) 71, 170, 356, 722
ApoI RAATTY 1 cut(s) 1121
AspLEI GCGC 3 cut(s) 175, 431, 738
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 884
BalI TGGCCA 1 cut(s) 961
BanI GGYRCC 3 cut(s) 123, 311, 428
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
BbvI GCAGC 4 cut(s) 58, 182, 368, 709
BccI CCATC 3 cut(s) 69, 711, 1097
BceAI ACGGC 2 cut(s) 585, 1098
BciT130I CCWGG 4 cut(s) 163, 316, 366, 1033
BfaI CTAG 2 cut(s) 683, 1115
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 432
BisI GCNGC 6 cut(s) 72, 171, 357, 432, 497, 723
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 6 cut(s) 73, 172, 358, 433, 498, 724
BmcAI AGTACT 1 cut(s) 756
Bme1390I CCNGG 4 cut(s) 163, 316, 366, 1033
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 125, 313, 430
BmrFI CCNGG 4 cut(s) 163, 316, 366, 1033
BmrI ACTGGG 3 cut(s) 132, 709, 906
BmsI GCATC 3 cut(s) 38, 924, 995
BmuI ACTGGG 3 cut(s) 132, 709, 906
BpmI CTGGAG 1 cut(s) 795
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 657
BsaBI GATNNNNATC 1 cut(s) 156
BsaHI GRCGYC 3 cut(s) 5, 429, 471
BsaJI CCNNGG 3 cut(s) 161, 364, 474
Bsc4I CCNNNNNNNGG 5 cut(s) 530, 607, 699, 1146, 1161
Bse1I ACTGG 3 cut(s) 138, 704, 901
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 4 cut(s) 163, 316, 366, 1033
BseDI CCNNGG 3 cut(s) 161, 364, 474
BseGI GGATG 2 cut(s) 722, 1028
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 5 cut(s) 530, 607, 699, 1146, 1161
BseMII CTCAG 2 cut(s) 133, 946
BseNI ACTGG 3 cut(s) 138, 704, 901
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 4 cut(s) 58, 182, 368, 709
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 9 cut(s) 40, 269, 331, 499, 670, 930, 961, 1085, 1150
BshNI GGYRCC 3 cut(s) 123, 311, 428
BslI CCNNNNNNNGG 5 cut(s) 530, 607, 699, 1146, 1161
BsnI GGCC 9 cut(s) 40, 269, 331, 499, 670, 930, 961, 1085, 1150
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
Bsp1720I GCTNAGC 1 cut(s) 282
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 4 cut(s) 271, 432, 496, 858
BspANI GGCC 9 cut(s) 40, 269, 331, 499, 670, 930, 961, 1085, 1150
BspCNI CTCAG 2 cut(s) 132, 945
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 3 cut(s) 125, 313, 430
BspPI GGATC 4 cut(s) 152, 251, 737, 1129
BspT107I GGYRCC 3 cut(s) 123, 311, 428
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 3 cut(s) 138, 704, 901
BssECI CCNNGG 3 cut(s) 161, 364, 474
BssMI GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
BssNI GRCGYC 3 cut(s) 5, 429, 471
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 4 cut(s) 163, 316, 366, 1033
Bst4CI ACNGT 2 cut(s) 128, 1018
BstACI GRCGYC 3 cut(s) 5, 429, 471
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 8 cut(s) 168, 267, 271, 288, 292, 324, 361, 959
BstDEI CTNAG 3 cut(s) 119, 282, 932
BstDSI CCRYGG 1 cut(s) 474
BstENI CCTNNNNNAGG 2 cut(s) 528, 1159
BstF5I GGATG 2 cut(s) 722, 1028
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 3 cut(s) 175, 431, 738
BstKTI GATC 6 cut(s) 160, 246, 460, 745, 835, 1137
BstMBI GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
BstMWI GCNNNNNNNGC 4 cut(s) 172, 287, 328, 977
BstNI CCWGG 4 cut(s) 163, 316, 366, 1033
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 4 cut(s) 161, 314, 364, 1031
BstSFI CTRYAG 1 cut(s) 750
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 58, 182, 368, 709
BstX2I RGATCY 1 cut(s) 1134
BstYI RGATCY 1 cut(s) 1134
BsuRI GGCC 9 cut(s) 40, 269, 331, 499, 670, 930, 961, 1085, 1150
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 3 cut(s) 15, 174, 231
BtsCI GGATG 2 cut(s) 722, 1028
BtsIMutI CAGTG 1 cut(s) 940
Cac8I GCNNGC 8 cut(s) 168, 267, 271, 288, 292, 324, 361, 959
CciI TCATGA 1 cut(s) 648
CfoI GCGC 3 cut(s) 175, 431, 738
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 2 cut(s) 257, 479
CsiI ACCWGGT 1 cut(s) 314
Csp6I GTAC 5 cut(s) 438, 486, 755, 766, 1109
CviAII CATG 3 cut(s) 435, 475, 649
CviQI GTAC 5 cut(s) 438, 486, 755, 766, 1109
DdeI CTNAG 3 cut(s) 119, 282, 932
DinI GGCGCC 1 cut(s) 430
DpnI GATC 6 cut(s) 159, 245, 459, 744, 834, 1136
DpnII GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 3 cut(s) 497, 959, 1083
Eco130I CCWWGG 1 cut(s) 474
Eco147I AGGCCT 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 857
EcoNI CCTNNNNNAGG 2 cut(s) 528, 1159
EcoRII CCWGG 4 cut(s) 161, 314, 364, 1031
EcoT14I CCWWGG 1 cut(s) 474
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 3 cut(s) 438, 478, 652
FatI CATG 3 cut(s) 434, 474, 648
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 179
Fnu4HI GCNGC 6 cut(s) 72, 171, 357, 432, 497, 723
FokI GGATG 2 cut(s) 729, 1015
Fsp4HI GCNGC 6 cut(s) 72, 171, 357, 432, 497, 723
FspBI CTAG 2 cut(s) 683, 1115
GlaI GCGC 3 cut(s) 174, 430, 737
GluI GCNGC 6 cut(s) 72, 171, 357, 432, 497, 723
GsuI CTGGAG 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 9 cut(s) 40, 269, 331, 499, 670, 930, 961, 1085, 1150
HgaI GACGC 2 cut(s) 257, 479
HhaI GCGC 3 cut(s) 175, 431, 738
Hin1I GRCGYC 3 cut(s) 5, 429, 471
Hin1II CATG 3 cut(s) 438, 478, 652
Hin6I GCGC 3 cut(s) 173, 429, 736
HinP1I GCGC 3 cut(s) 173, 429, 736
HincII GTYRAC 2 cut(s) 393, 1021
HindII GTYRAC 2 cut(s) 393, 1021
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 4 cut(s) 133, 152, 875, 906
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 2 cut(s) 393, 1021
Hpy188I TCNGA 4 cut(s) 157, 548, 837, 1095
Hpy188III TCNNGA 8 cut(s) 149, 377, 455, 461, 649, 774, 818, 990
Hpy8I GTNNAC 2 cut(s) 393, 1021
Hpy99I CGWCG 2 cut(s) 10, 251
HpyAV CCTTC 2 cut(s) 54, 383
HpyCH4III ACNGT 2 cut(s) 128, 1018
HpyCH4IV ACGT 2 cut(s) 5, 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 287, 328, 977
HpyF3I CTNAG 3 cut(s) 119, 282, 932
HpySE526I ACGT 2 cut(s) 5, 484
Hsp92I GRCGYC 3 cut(s) 5, 429, 471
Hsp92II CATG 3 cut(s) 438, 478, 652
HspAI GCGC 3 cut(s) 173, 429, 736
KasI GGCGCC 1 cut(s) 428
Kzo9I GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
LmnI GCTCC 2 cut(s) 62, 704
Lsp1109I GCAGC 4 cut(s) 58, 182, 368, 709
LweI GCATC 3 cut(s) 38, 924, 995
MabI ACCWGGT 1 cut(s) 314
MaeI CTAG 2 cut(s) 683, 1115
MaeII ACGT 2 cut(s) 5, 484
MalI GATC 6 cut(s) 159, 245, 459, 744, 834, 1136
MboI GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
MboII GAAGA 3 cut(s) 839, 850, 1144
MfeI CAATTG 2 cut(s) 501, 554
MflI RGATCY 1 cut(s) 1134
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 7 cut(s) 501, 554, 592, 726, 951, 995, 1121
MluNI TGGCCA 1 cut(s) 961
Mly113I GGCGCC 1 cut(s) 429
MmeI TCCRAC 2 cut(s) 110, 607
MnlI CCTC 8 cut(s) 51, 305, 419, 590, 656, 681, 941, 1140
Mox20I TGGCCA 1 cut(s) 961
MscI TGGCCA 1 cut(s) 961
MseI TTAA 5 cut(s) 384, 422, 696, 729, 1157
Msp20I TGGCCA 1 cut(s) 961
MspR9I CCNGG 4 cut(s) 163, 316, 366, 1033
MunI CAATTG 2 cut(s) 501, 554
MvaI CCWGG 4 cut(s) 163, 316, 366, 1033
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 172, 287, 328, 977
NarI GGCGCC 1 cut(s) 429
NcoI CCATGG 1 cut(s) 474
NdeI CATATG 1 cut(s) 179
NdeII GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
NlaIII CATG 3 cut(s) 438, 478, 652
NlaIV GGNNCC 3 cut(s) 125, 313, 430
NspI RCATGY 1 cut(s) 438
PagI TCATGA 1 cut(s) 648
PceI AGGCCT 1 cut(s) 40
PfeI GAWTC 4 cut(s) 133, 152, 875, 906
PkrI GCNGC 6 cut(s) 73, 172, 358, 433, 498, 724
PluTI GGCGCC 1 cut(s) 432
Psp6I CCWGG 4 cut(s) 161, 314, 364, 1031
PspGI CCWGG 4 cut(s) 161, 314, 364, 1031
PspN4I GGNNCC 3 cut(s) 125, 313, 430
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 1134
RsaI GTAC 5 cut(s) 439, 487, 756, 767, 1110
RsaNI GTAC 5 cut(s) 438, 486, 755, 766, 1109
SaqAI TTAA 5 cut(s) 384, 422, 696, 729, 1157
SatI GCNGC 6 cut(s) 72, 171, 357, 432, 497, 723
Sau3AI GATC 6 cut(s) 157, 243, 457, 742, 832, 1134
Sau96I GGNCC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 756
ScrFI CCNGG 4 cut(s) 163, 316, 366, 1033
SexAI ACCWGGT 1 cut(s) 314
SfaNI GCATC 3 cut(s) 38, 924, 995
SfcI CTRYAG 1 cut(s) 750
SfoI GGCGCC 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 7 cut(s) 501, 554, 592, 726, 951, 995, 1121
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 4 cut(s) 271, 432, 496, 858
SspDI GGCGCC 1 cut(s) 428
SspMI CTAG 2 cut(s) 683, 1115
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 4 cut(s) 161, 314, 364, 1031
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 128, 1018
TaiI ACGT 2 cut(s) 8, 487
TaqI TCGA 4 cut(s) 246, 297, 460, 1061
TasI AATT 7 cut(s) 501, 554, 592, 726, 951, 995, 1121
TatI WGTACW 2 cut(s) 754, 765
TauI GCSGC 2 cut(s) 434, 499
TfiI GAWTC 4 cut(s) 133, 152, 875, 906
Tru1I TTAA 5 cut(s) 384, 422, 696, 729, 1157
Tru9I TTAA 5 cut(s) 384, 422, 696, 729, 1157
TscAI CASTG 1 cut(s) 940
TseI GCWGC 4 cut(s) 71, 170, 356, 722
TspDTI ATGAA 5 cut(s) 94, 104, 177, 665, 1017
TspGWI ACGGA 1 cut(s) 1159
TspRI CASTG 1 cut(s) 940
XagI CCTNNNNNAGG 2 cut(s) 528, 1159
XapI RAATTY 1 cut(s) 1121
XceI RCATGY 1 cut(s) 438
XspI CTAG 2 cut(s) 683, 1115
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.