Rh4BG443400

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001284
Physical Location & Seq
Reverse (-)
58306272 .. 58309767
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG443400.1

Sequence Viewer

Length: 1155 bp
ATGACGTCGTTTCGGCTGTTGTCTCGGGCATCGCGTAGGCTTCTGAAGCCTTCACACTCTCGCTCCCATCTCTCTGCCTATCAGCCAACCACAACCACCACCACCACCAAACCGAACCCTAAAGAAACACCTTTGATCCCATTTAATCACAGGCACCGTTGGATTCCCAGTTATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCGACCTCGTCTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGATGCTTATTTGCCCAGGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGCTGCTTGCTTGGCCTTGTATGTGGTCAATAACACTGGCAGCAAGCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGGGCCGGATGTACCGTAAATGATCTCCTTGATCGGGATATTGACACCATGGTGGAACGTACAAAGTTGCGGCCAGTTGCGAGTGGTCTTTTGACACCTTTTAAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTGGGTATTGGAATTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCTCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTTGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATCAAAGGAAGCATTGATCCAGCTATAGTACTCCCTTTGTACATTTCTGGCGTATTTTGGACACTTGTGTATGATACGATATATGCACATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCGCTCAGTGGATATAATGCCGAAATTGGCTGGCCATATTATGCACTTTTGGCAGTTGCATCTGGACAATTAGCTTGGCAGATATGGACAGTTGACCTTTCATCCAGGCTTGATTGCAATGGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGCAATATTATTGGGAAGACTGTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

384

Amino Acids

42.61

Weight (kDa)

9.45

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 120 - 363 1.7e-59 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 153, 344
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 304, 529, 891
AclWI GGATC 3 cut(s) 130, 284, 770
AcoI YGGCCR 2 cut(s) 530, 992
AcsI RAATTY 1 cut(s) 606
AcuI CTGAAG 2 cut(s) 65, 890
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 472, 520, 789, 800
AfiI CCNNNNNNNGG 5 cut(s) 493, 563, 640, 732, 897
AgsI TTSAA 2 cut(s) 587, 912
AjnI CCWGG 4 cut(s) 293, 347, 397, 1064
AleI CACNNNNGTG 1 cut(s) 509
AluBI AGCT 5 cut(s) 269, 319, 740, 782, 1034
AluI AGCT 5 cut(s) 269, 319, 740, 782, 1034
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 130, 284, 770
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 6 cut(s) 300, 362, 462, 530, 701, 992
ApeKI GCWGC 3 cut(s) 352, 389, 755
ApoI RAATTY 1 cut(s) 606
AspLEI GCGC 2 cut(s) 202, 964
AspS9I GGNCC 2 cut(s) 301, 462
AsuHPI GGTGA 1 cut(s) 917
AvaI CYCGRG 1 cut(s) 24
BalI TGGCCA 1 cut(s) 994
BanI GGYRCC 2 cut(s) 153, 344
BbsI GAAGAC 2 cut(s) 210, 1147
BbvI GCAGC 3 cut(s) 339, 401, 742
BccI CCATC 2 cut(s) 75, 744
BceAI ACGGC 1 cut(s) 618
BciT130I CCWGG 4 cut(s) 295, 349, 399, 1066
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 783
BisI GCNGC 4 cut(s) 353, 390, 530, 756
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 4 cut(s) 354, 391, 531, 757
BmcAI AGTACT 1 cut(s) 789
Bme1390I CCNGG 4 cut(s) 295, 349, 399, 1066
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 301, 462
BmiI GGNNCC 3 cut(s) 155, 346, 463
BmrFI CCNGG 4 cut(s) 295, 349, 399, 1066
BmrI ACTGGG 3 cut(s) 162, 742, 939
BmsI GCATC 4 cut(s) 38, 271, 957, 1028
BmuI ACTGGG 3 cut(s) 162, 742, 939
BpiI GAAGAC 2 cut(s) 210, 1147
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 690
Bsa29I ATCGAT 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 293, 397, 507, 715
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 5 cut(s) 493, 563, 640, 732, 897
Bse1I ACTGG 5 cut(s) 168, 390, 533, 737, 934
Bse3DI GCAATG 1 cut(s) 1084
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 4 cut(s) 295, 349, 399, 1066
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 4 cut(s) 293, 397, 507, 715
BseGI GGATG 4 cut(s) 443, 473, 755, 1061
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 5 cut(s) 493, 563, 640, 732, 897
BseMI GCAATG 1 cut(s) 1084
BseMII CTCAG 2 cut(s) 202, 979
BseNI ACTGG 5 cut(s) 168, 390, 533, 737, 934
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 3 cut(s) 339, 401, 742
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 6 cut(s) 302, 364, 464, 532, 703, 994
BshNI GGYRCC 2 cut(s) 153, 344
BshVI ATCGAT 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 465
BslI CCNNNNNNNGG 5 cut(s) 493, 563, 640, 732, 897
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 6 cut(s) 302, 364, 464, 532, 703, 994
BsoBI CYCGRG 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 3 cut(s) 304, 529, 891
BspANI GGCC 6 cut(s) 302, 364, 464, 532, 703, 994
BspCNI CTCAG 2 cut(s) 201, 978
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 681
BspLI GGNNCC 3 cut(s) 155, 346, 463
BspPI GGATC 3 cut(s) 130, 284, 770
BspT107I GGYRCC 2 cut(s) 153, 344
BsrDI GCAATG 1 cut(s) 1084
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 5 cut(s) 168, 390, 533, 737, 934
BssECI CCNNGG 4 cut(s) 293, 397, 507, 715
BssMI GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 507, 715
Bst2UI CCWGG 4 cut(s) 295, 349, 399, 1066
Bst4CI ACNGT 4 cut(s) 158, 475, 1051, 1146
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 7 cut(s) 300, 304, 321, 325, 357, 394, 992
BstDEI CTNAG 3 cut(s) 188, 315, 965
BstDSI CCRYGG 1 cut(s) 507
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 4 cut(s) 443, 473, 755, 1061
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 202, 964
BstKTI GATC 7 cut(s) 138, 187, 279, 484, 493, 778, 868
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
BstMWI GCNNNNNNNGC 5 cut(s) 46, 199, 320, 361, 1010
BstNI CCWGG 4 cut(s) 295, 349, 399, 1066
BstSCI CCNGG 4 cut(s) 293, 347, 397, 1064
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 339, 401, 742
BstV2I GAAGAC 2 cut(s) 210, 1147
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 6 cut(s) 302, 364, 464, 532, 703, 994
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 507
BtgZI GCGATG 2 cut(s) 15, 264
BtsCI GGATG 4 cut(s) 443, 473, 755, 1061
BtsI GCAGTG 1 cut(s) 1129
BtsIMutI CAGTG 3 cut(s) 383, 973, 1129
Cac8I GCNNGC 7 cut(s) 300, 304, 321, 325, 357, 394, 992
CciI TCATGA 1 cut(s) 681
CfoI GCGC 2 cut(s) 202, 964
Cfr13I GGNCC 2 cut(s) 301, 462
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 4 cut(s) 471, 519, 788, 799
CviAII CATG 2 cut(s) 508, 682
CviQI GTAC 4 cut(s) 471, 519, 788, 799
DdeI CTNAG 3 cut(s) 188, 315, 965
DpnI GATC 7 cut(s) 137, 186, 278, 483, 492, 777, 867
DpnII GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
DraI TTTAAA 1 cut(s) 562
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 530, 992
Eco130I CCWWGG 2 cut(s) 507, 715
Eco57I CTGAAG 2 cut(s) 65, 890
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 606
EcoRII CCWGG 4 cut(s) 293, 347, 397, 1064
EcoT14I CCWWGG 2 cut(s) 507, 715
ErhI CCWWGG 2 cut(s) 507, 715
FaeI CATG 2 cut(s) 511, 685
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FatI CATG 2 cut(s) 507, 681
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 4 cut(s) 353, 390, 530, 756
FokI GGATG 4 cut(s) 450, 480, 762, 1048
Fsp4HI GCNGC 4 cut(s) 353, 390, 530, 756
FspBI CTAG 1 cut(s) 662
GlaI GCGC 2 cut(s) 201, 963
GluI GCNGC 4 cut(s) 353, 390, 530, 756
HaeIII GGCC 6 cut(s) 302, 364, 464, 532, 703, 994
HapII CCGG 1 cut(s) 465
HhaI GCGC 2 cut(s) 202, 964
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 511, 685
Hin6I GCGC 2 cut(s) 200, 962
HinP1I GCGC 2 cut(s) 200, 962
HincII GTYRAC 3 cut(s) 426, 693, 1054
HindII GTYRAC 3 cut(s) 426, 693, 1054
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 4 cut(s) 163, 179, 908, 939
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 3 cut(s) 426, 693, 1054
Hpy188I TCNGA 4 cut(s) 45, 184, 581, 870
Hpy188III TCNNGA 6 cut(s) 176, 410, 494, 682, 851, 1023
Hpy8I GTNNAC 3 cut(s) 426, 693, 1054
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 60, 416, 865
HpyCH4III ACNGT 4 cut(s) 158, 475, 1051, 1146
HpyCH4IV ACGT 2 cut(s) 5, 517
HpyCH4V TGCA 8 cut(s) 758, 845, 948, 1004, 1019, 1077, 1122, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 199, 320, 361, 1010
HpyF3I CTNAG 3 cut(s) 188, 315, 965
HpySE526I ACGT 2 cut(s) 5, 517
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 511, 685
HspAI GCGC 2 cut(s) 200, 962
Kzo9I GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
LmnI GCTCC 2 cut(s) 68, 737
Lsp1109I GCAGC 3 cut(s) 339, 401, 742
LweI GCATC 4 cut(s) 38, 271, 957, 1028
MaeI CTAG 1 cut(s) 662
MaeII ACGT 2 cut(s) 5, 517
MalI GATC 7 cut(s) 137, 186, 278, 483, 492, 777, 867
MboI GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
MboII GAAGA 3 cut(s) 210, 872, 1152
MfeI CAATTG 1 cut(s) 587
MlsI TGGCCA 1 cut(s) 994
MluCI AATT 5 cut(s) 587, 606, 625, 984, 1028
MluNI TGGCCA 1 cut(s) 994
MmeI TCCRAC 2 cut(s) 140, 640
MnlI CCTC 6 cut(s) 223, 338, 623, 687, 714, 891
Mox20I TGGCCA 1 cut(s) 994
MscI TGGCCA 1 cut(s) 994
MseI TTAA 5 cut(s) 144, 417, 455, 561, 729
MslI CAYNNNNRTG 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 994
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 4 cut(s) 295, 349, 399, 1066
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 4 cut(s) 295, 349, 399, 1066
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 46, 199, 320, 361, 1010
NcoI CCATGG 1 cut(s) 507
NdeII GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
NlaIII CATG 2 cut(s) 511, 685
NlaIV GGNNCC 3 cut(s) 155, 346, 463
OliI CACNNNNGTG 1 cut(s) 509
PagI TCATGA 1 cut(s) 681
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 221
PfeI GAWTC 4 cut(s) 163, 179, 908, 939
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 354, 391, 531, 757
Psp6I CCWGG 4 cut(s) 293, 347, 397, 1064
PspGI CCWGG 4 cut(s) 293, 347, 397, 1064
PspN4I GGNNCC 3 cut(s) 155, 346, 463
PspPI GGNCC 2 cut(s) 301, 462
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 4 cut(s) 472, 520, 789, 800
RsaNI GTAC 4 cut(s) 471, 519, 788, 799
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 5 cut(s) 144, 417, 455, 561, 729
SatI GCNGC 4 cut(s) 353, 390, 530, 756
Sau3AI GATC 7 cut(s) 135, 184, 276, 481, 490, 775, 865
Sau96I GGNCC 2 cut(s) 301, 462
ScaI AGTACT 1 cut(s) 789
ScrFI CCNGG 4 cut(s) 295, 349, 399, 1066
SfaNI GCATC 4 cut(s) 38, 271, 957, 1028
SfcI CTRYAG 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
Sse9I AATT 5 cut(s) 587, 606, 625, 984, 1028
SsiI CCGC 3 cut(s) 304, 529, 891
SspI AATATT 1 cut(s) 1131
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 4 cut(s) 293, 347, 397, 1064
StyI CCWWGG 2 cut(s) 507, 715
TaaI ACNGT 4 cut(s) 158, 475, 1051, 1146
TaiI ACGT 2 cut(s) 8, 520
TaqI TCGA 5 cut(s) 209, 224, 279, 330, 1094
TasI AATT 5 cut(s) 587, 606, 625, 984, 1028
TatI WGTACW 2 cut(s) 787, 798
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 4 cut(s) 163, 179, 908, 939
Tru1I TTAA 5 cut(s) 144, 417, 455, 561, 729
Tru9I TTAA 5 cut(s) 144, 417, 455, 561, 729
TscAI CASTG 3 cut(s) 390, 973, 1129
TseI GCWGC 3 cut(s) 352, 389, 755
TspDTI ATGAA 3 cut(s) 210, 698, 1050
TspRI CASTG 3 cut(s) 390, 973, 1129
Tth111I GACNNNGTC 1 cut(s) 214
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 1 cut(s) 606
XspI CTAG 1 cut(s) 662
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.