MD11G1112600.v1.1

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001284
Physical Location & Seq
Forward (+)
10182796 .. 10185991
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1112600.v1.1.491

Sequence Viewer

Length: 1215 bp
ATGGAGTCCTTTTTGGTGGTGTCTCGCACTTCCGCTTCAAGTAGGTTTCTGAAACATTCATATCCTCTCTCTCGCACCATATTCGCACCCTCTTCTTATCACCCAACTTCCACCGCCACCACCACTGCCACCAGCAATCCAAACCCTTACCGCTATCCCAACGTAAGACGGTTAGGCTCGTTCAGTCAAAGGCACCGTGGGGATACTTGCAGTCGCGTTGGCTTTGATCACAGACTCGGATCGCACATGTCGAGCTCGTCTTCACCTTCTGCTGCCGCAAAGAGAGGTGCAAATCAAACCATCAGCAATGACAACGACAAGGTTGAGGGTACTTGGATCGATTTGTACCTGCCAATGCGAGCTCAGCCTTATGCTAAGCTCGCTCGCCTCGACAAGCCGATCGGCACCTGGTTGTATGCGTGGCCTTTTTGGTGGTCAACAGCAATGGCAGCAAATCAAGGGCAGCTTCCTGATATTAAGATTTTGACACTACTTGGATTTGGAGCTCTGTTTATTAGGGGCGCCGGATGCACCATAAACGATCTCGTTGACCGAGATATTGATATCAAGGTGGAACGTACAAAGTCGCGGCCTCTTGCAAGTGGTGTTTTGACACCTTTTCAGGGGATTTCTTTTCTTGGATTTCAATTGCTTTTGGGTCTTGGAATTTACCTTCAATTGAATAATTATAGCTGCGTTTTGTGCGTTTCATCTTGGTTCCTAATTTTCACCTATCCTCTCATGAAGAGATTGACATACTGGCCTCAAGCCTATCTAGGTTTGATGATAAATTGGGGGGCTTTAATAGGATGGGCAGCGGTAAAAAGAAGCATTGATCCAGCTATAGTGCTTCCATTGTACTTTTCTGGAGTATGCTGGACACTGGTCTATGATACCATATATGCACATCAGGACAAGGAAGATGATCTGAAAGTAGGTGTTAAGTCTACGGCATTGAAATTCGGCGACTCAACCAAAAAATGGATTACTGGGTTTGGAATTATGTGCATGAGCAGTCTTGCCCTCAGTGGATACAGTGCTGAAATCGGGTGGCCGTACTATACATTTTTGGGGGTTGCATTTGGACAATTAGCTTGGCAAATATCAACAGTTGATCTTTCATCCCCAGCTGATTGCAGTAGAAAATTTGTGTCGAACAAGTGGTTTGGCGCTATTTTGTTCATCGCAATCCTATTTGGACGACTTTCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

405

Amino Acids

44.97

Weight (kDa)

9.5

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 140 - 386 8.2e-59 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AccB1I GGYRCC 3 cut(s) 192, 404, 521
AccB7I CCANNNNNTGG 1 cut(s) 981
AccI GTMKAC 1 cut(s) 947
AccII CGCG 2 cut(s) 216, 589
AciI CCGC 6 cut(s) 33, 114, 151, 276, 589, 818
AclWI GGATC 3 cut(s) 247, 344, 830
AcoI YGGCCR 1 cut(s) 1052
AcsI RAATTY 3 cut(s) 666, 959, 1145
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 5 cut(s) 331, 347, 580, 860, 1058
AfiI CCNNNNNNNGG 2 cut(s) 623, 981
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 39, 647, 677, 682, 958
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 9 cut(s) 255, 362, 379, 466, 506, 693, 842, 1094, 1130
AluI AGCT 9 cut(s) 255, 362, 379, 466, 506, 693, 842, 1094, 1130
Alw21I GWGCWC 3 cut(s) 257, 364, 508
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 247, 344, 830
AoxI GGCC 4 cut(s) 422, 590, 761, 1052
ApeKI GCWGC 5 cut(s) 272, 449, 463, 693, 815
ApoI RAATTY 3 cut(s) 666, 959, 1145
AspLEI GCGC 2 cut(s) 524, 1172
AsuHPI GGTGA 3 cut(s) 92, 255, 721
BanI GGYRCC 3 cut(s) 192, 404, 521
BanII GRGCYC 3 cut(s) 257, 364, 508
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 3 cut(s) 257, 364, 508
BbvI GCAGC 5 cut(s) 259, 461, 475, 680, 827
BccI CCATC 2 cut(s) 308, 804
BceAI ACGGC 2 cut(s) 966, 1039
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 1 cut(s) 409
BciVI GTATCC 2 cut(s) 196, 1025
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 2 cut(s) 525, 1173
BfuAI ACCTGC 1 cut(s) 357
BfuI GTATCC 2 cut(s) 196, 1025
BisI GCNGC 7 cut(s) 273, 276, 450, 464, 590, 694, 816
BlpI GCTNAGC 2 cut(s) 363, 375
BlsI GCNGC 7 cut(s) 274, 277, 451, 465, 591, 695, 817
Bme1390I CCNGG 1 cut(s) 409
BmiI GGNNCC 4 cut(s) 194, 406, 523, 719
BmrFI CCNGG 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 999
BoxI GACNNNNGTC 1 cut(s) 884
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 888
Bpu1102I GCTNAGC 2 cut(s) 363, 375
BpuEI CTTGAG 1 cut(s) 750
Bsa29I ATCGAT 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 981
Bse1I ACTGG 3 cut(s) 764, 888, 994
Bse3DI GCAATG 2 cut(s) 313, 450
BseBI CCWGG 1 cut(s) 409
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 533, 815, 1121
BseLI CCNNNNNNNGG 2 cut(s) 623, 981
BseMI GCAATG 2 cut(s) 313, 450
BseMII CTCAG 2 cut(s) 377, 1039
BseNI ACTGG 3 cut(s) 764, 888, 994
BseXI GCAGC 5 cut(s) 259, 461, 475, 680, 827
BseYI CCCAGC 1 cut(s) 1126
Bsh1236I CGCG 2 cut(s) 216, 589
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 4 cut(s) 424, 592, 763, 1054
BshNI GGYRCC 3 cut(s) 192, 404, 521
BshVI ATCGAT 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 3 cut(s) 257, 364, 508
BsiSI CCGG 1 cut(s) 525
BslI CCNNNNNNNGG 2 cut(s) 623, 981
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 4 cut(s) 424, 592, 763, 1054
Bsp1286I GDGCHC 3 cut(s) 257, 364, 508
Bsp143I GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
Bsp1720I GCTNAGC 2 cut(s) 363, 375
BspACI CCGC 6 cut(s) 33, 114, 151, 276, 589, 818
BspANI GGCC 4 cut(s) 424, 592, 763, 1054
BspCNI CTCAG 2 cut(s) 376, 1038
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 2 cut(s) 216, 589
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 4 cut(s) 194, 406, 523, 719
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 3 cut(s) 247, 344, 830
BspT107I GGYRCC 3 cut(s) 192, 404, 521
BsrDI GCAATG 2 cut(s) 313, 450
BsrI ACTGG 3 cut(s) 764, 888, 994
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
BssNI GRCGYC 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 4 cut(s) 171, 197, 1037, 1111
Bst6I CTCTTC 2 cut(s) 97, 740
BstACI GRCGYC 1 cut(s) 522
BstC8I GCNNGC 3 cut(s) 360, 381, 385
BstDEI CTNAG 3 cut(s) 363, 375, 1025
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 3 cut(s) 533, 815, 1121
BstFNI CGCG 2 cut(s) 216, 589
BstH2I RGCGCY 2 cut(s) 525, 1173
BstHHI GCGC 2 cut(s) 524, 1172
BstKTI GATC 8 cut(s) 229, 242, 339, 402, 544, 838, 928, 1117
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 5 cut(s) 364, 380, 449, 528, 702
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 884
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 843
BstUI CGCG 2 cut(s) 216, 589
BstV1I GCAGC 5 cut(s) 259, 461, 475, 680, 827
BstV2I GAAGAC 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 339
BsuI GTATCC 2 cut(s) 196, 1025
BsuRI GGCC 4 cut(s) 424, 592, 763, 1054
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 1168
BtsCI GGATG 3 cut(s) 533, 815, 1121
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 123, 881, 1033, 1042
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 360, 381, 385
CciI TCATGA 1 cut(s) 741
CfoI GCGC 2 cut(s) 524, 1172
ClaI ATCGAT 1 cut(s) 339
CsiI ACCWGGT 1 cut(s) 407
Csp6I GTAC 5 cut(s) 330, 346, 579, 859, 1057
CviAII CATG 3 cut(s) 247, 742, 1009
CviQI GTAC 5 cut(s) 330, 346, 579, 859, 1057
DdeI CTNAG 3 cut(s) 363, 375, 1025
DinI GGCGCC 1 cut(s) 523
DpnI GATC 8 cut(s) 228, 241, 338, 401, 543, 837, 927, 1116
DpnII GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
EaeI YGGCCR 1 cut(s) 1052
Eam1104I CTCTTC 2 cut(s) 97, 740
EarI CTCTTC 2 cut(s) 97, 740
Ecl136II GAGCTC 3 cut(s) 255, 362, 506
Eco24I GRGCYC 3 cut(s) 257, 364, 508
Eco32I GATATC 1 cut(s) 565
Eco53kI GAGCTC 3 cut(s) 255, 362, 506
EcoICRI GAGCTC 3 cut(s) 255, 362, 506
EcoRII CCWGG 1 cut(s) 407
EcoRV GATATC 1 cut(s) 565
EcoT38I GRGCYC 3 cut(s) 257, 364, 508
EgeI GGCGCC 1 cut(s) 523
EheI GGCGCC 1 cut(s) 523
FaeI CATG 3 cut(s) 250, 745, 1012
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 3 cut(s) 246, 741, 1008
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 7 cut(s) 273, 276, 450, 464, 590, 694, 816
FokI GGATG 3 cut(s) 540, 822, 1108
FriOI GRGCYC 3 cut(s) 257, 364, 508
Fsp4HI GCNGC 7 cut(s) 273, 276, 450, 464, 590, 694, 816
FspBI CTAG 1 cut(s) 776
GlaI GCGC 2 cut(s) 523, 1171
GluI GCNGC 7 cut(s) 273, 276, 450, 464, 590, 694, 816
GsaI CCCAGC 1 cut(s) 1130
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 2 cut(s) 525, 1173
HaeIII GGCC 4 cut(s) 424, 592, 763, 1054
HapII CCGG 1 cut(s) 525
HhaI GCGC 2 cut(s) 524, 1172
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 3 cut(s) 250, 745, 1012
Hin6I GCGC 2 cut(s) 522, 1170
HinP1I GCGC 2 cut(s) 522, 1170
HincII GTYRAC 2 cut(s) 438, 550
HindII GTYRAC 2 cut(s) 438, 550
HinfI GANTC 3 cut(s) 5, 234, 968
HpaII CCGG 1 cut(s) 525
HphI GGTGA 3 cut(s) 92, 255, 721
Hpy166II GTNNAC 3 cut(s) 438, 550, 948
Hpy188I TCNGA 3 cut(s) 51, 239, 930
Hpy188III TCNNGA 4 cut(s) 470, 742, 867, 911
Hpy8I GTNNAC 3 cut(s) 438, 550, 948
HpyAV CCTTC 2 cut(s) 276, 683
HpyCH4III ACNGT 4 cut(s) 171, 197, 1037, 1111
HpyCH4IV ACGT 2 cut(s) 162, 577
HpyCH4V TGCA 8 cut(s) 210, 290, 531, 599, 905, 1008, 1079, 1137
HpyF10VI GCNNNNNNNGC 5 cut(s) 364, 380, 449, 528, 702
HpyF3I CTNAG 3 cut(s) 363, 375, 1025
HpySE526I ACGT 2 cut(s) 162, 577
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 3 cut(s) 250, 745, 1012
HspAI GCGC 2 cut(s) 522, 1170
KasI GGCGCC 1 cut(s) 521
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 5 cut(s) 259, 461, 475, 680, 827
LweI GCATC 1 cut(s) 518
MabI ACCWGGT 1 cut(s) 407
MaeI CTAG 1 cut(s) 776
MaeII ACGT 2 cut(s) 162, 577
MalI GATC 8 cut(s) 228, 241, 338, 401, 543, 837, 927, 1116
MboI GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
MboII GAAGA 4 cut(s) 84, 252, 757, 932
MfeI CAATTG 2 cut(s) 647, 677
MhlI GDGCHC 3 cut(s) 257, 364, 508
Mly113I GGCGCC 1 cut(s) 522
MlyI GAGTC 3 cut(s) 14, 228, 962
MnlI CCTC 9 cut(s) 75, 100, 278, 319, 398, 603, 747, 774, 1034
MseI TTAA 4 cut(s) 477, 803, 942, 1213
MspA1I CMGCKG 2 cut(s) 818, 1130
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 409
MunI CAATTG 2 cut(s) 647, 677
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 2 cut(s) 216, 589
MwoI GCNNNNNNNGC 5 cut(s) 364, 380, 449, 528, 702
NarI GGCGCC 1 cut(s) 522
NdeII GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
NlaIII CATG 3 cut(s) 250, 745, 1012
NlaIV GGNNCC 4 cut(s) 194, 406, 523, 719
NspI RCATGY 1 cut(s) 250
PagI TCATGA 1 cut(s) 741
PciI ACATGT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 248, 387
PflMI CCANNNNNTGG 1 cut(s) 981
PkrI GCNGC 7 cut(s) 274, 277, 451, 465, 591, 695, 817
Ple19I CGATCG 1 cut(s) 402
PleI GAGTC 3 cut(s) 13, 228, 962
PluTI GGCGCC 1 cut(s) 525
PpsI GAGTC 3 cut(s) 13, 228, 962
PscI ACATGT 1 cut(s) 246
PshAI GACNNNNGTC 1 cut(s) 884
Psp124BI GAGCTC 3 cut(s) 257, 364, 508
Psp6I CCWGG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 1126
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 4 cut(s) 194, 406, 523, 719
PvuI CGATCG 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 5 cut(s) 331, 347, 580, 860, 1058
RsaNI GTAC 5 cut(s) 330, 346, 579, 859, 1057
SacI GAGCTC 3 cut(s) 257, 364, 508
SaqAI TTAA 4 cut(s) 477, 803, 942, 1213
SatI GCNGC 7 cut(s) 273, 276, 450, 464, 590, 694, 816
Sau3AI GATC 8 cut(s) 226, 239, 336, 399, 541, 835, 925, 1114
SchI GAGTC 3 cut(s) 14, 228, 962
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 3 cut(s) 257, 364, 508
SexAI ACCWGGT 1 cut(s) 407
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 843
SfoI GGCGCC 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
SsiI CCGC 6 cut(s) 33, 114, 151, 276, 589, 818
SspDI GGCGCC 1 cut(s) 521
SspMI CTAG 1 cut(s) 776
SstI GAGCTC 3 cut(s) 257, 364, 508
StyD4I CCNGG 1 cut(s) 407
TaaI ACNGT 4 cut(s) 171, 197, 1037, 1111
TaiI ACGT 2 cut(s) 165, 580
TaqI TCGA 4 cut(s) 251, 339, 390, 1154
TaqII GACCGA 1 cut(s) 567
TatI WGTACW 1 cut(s) 858
TauI GCSGC 2 cut(s) 278, 592
Tru1I TTAA 4 cut(s) 477, 803, 942, 1213
Tru9I TTAA 4 cut(s) 477, 803, 942, 1213
TscAI CASTG 4 cut(s) 130, 888, 1033, 1042
TseI GCWGC 5 cut(s) 272, 449, 463, 693, 815
TspDTI ATGAA 6 cut(s) 48, 699, 758, 1110, 1171, 1197
TspRI CASTG 4 cut(s) 130, 888, 1033, 1042
Van91I CCANNNNNTGG 1 cut(s) 981
XapI RAATTY 3 cut(s) 666, 959, 1145
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 947
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.