Rh4AG434200

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001284
Physical Location & Seq
Reverse (-)
72827270 .. 72830694
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG434200.1

Sequence Viewer

Length: 1032 bp
ATGACGTCGTTTCGGCTGCTGTCTCGGGCAACGCGTAGGCTTATGAAGCCTTCACACTGTCGCTCCCATCTCTCTGCTTATCAGCCAACCACCACCAAACCGAACCCTAAAGAAATCCCTTTGATCCCATTTAATCCCAGGCACCGTTGGATTCCCAGTTATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCGACCTCGTCTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCCAGGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTCAATAACACTGGCAGCAAGCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGGGCCGGATGTACCGTAAATGATCTCCTTGATCGGGATATTGACACCATGGTGGAACGTACAAAGTTGCGGCCAGTTGCGAGTTGTCTTTTAACACCTTTTAAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGCCGTGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCTCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTTGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATCAAAGGAAGCATTGATCCAGCTATAGTACTCCCATTGTACATTTCTGGCGTATTTTGGACACTTGTGTATGATACGATATATGCACATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCGCTCAGTGGATATAATGCCGAAATTGGTTTTCCCATTCTTTCTTTCTTTTCATTTCTATTTTCTCTTATATATAGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 ko01100 ko01110 map00130 map01100 map01110
Pfam Domains
Protein Families
UbiA

Protein Analysis

343

Amino Acids

38.33

Weight (kDa)

9.35

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 116 - 337 2.1e-52 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 141, 332
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 292, 517, 879
AclWI GGATC 3 cut(s) 118, 272, 758
AcoI YGGCCR 1 cut(s) 518
AcsI RAATTY 1 cut(s) 594
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 460, 508, 777, 788
AfiI CCNNNNNNNGG 5 cut(s) 481, 551, 628, 720, 885
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 2 cut(s) 575, 900
AjnI CCWGG 4 cut(s) 137, 281, 335, 385
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 4 cut(s) 257, 307, 728, 770
AluI AGCT 4 cut(s) 257, 307, 728, 770
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 118, 272, 758
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 5 cut(s) 288, 350, 450, 518, 689
ApeKI GCWGC 3 cut(s) 16, 377, 743
ApoI RAATTY 1 cut(s) 594
AspLEI GCGC 2 cut(s) 190, 952
AspS9I GGNCC 2 cut(s) 289, 450
AsuHPI GGTGA 1 cut(s) 905
AvaI CYCGRG 1 cut(s) 24
BanI GGYRCC 2 cut(s) 141, 332
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 3, 389, 730
BccI CCATC 2 cut(s) 75, 732
BceAI ACGGC 1 cut(s) 606
BciT130I CCWGG 4 cut(s) 139, 283, 337, 387
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 650
BfmI CTRYAG 1 cut(s) 771
BisI GCNGC 4 cut(s) 17, 378, 518, 744
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 4 cut(s) 18, 379, 519, 745
BmcAI AGTACT 1 cut(s) 777
Bme1390I CCNGG 4 cut(s) 139, 283, 337, 387
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 289, 450
BmiI GGNNCC 3 cut(s) 143, 334, 451
BmrFI CCNGG 4 cut(s) 139, 283, 337, 387
BmrI ACTGGG 3 cut(s) 150, 730, 927
BmsI GCATC 1 cut(s) 945
BmuI ACTGGG 3 cut(s) 150, 730, 927
BpiI GAAGAC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 137, 281, 385, 495, 703
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 5 cut(s) 481, 551, 628, 720, 885
Bse1I ACTGG 5 cut(s) 156, 378, 521, 725, 922
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 4 cut(s) 139, 283, 337, 387
BseDI CCNNGG 5 cut(s) 137, 281, 385, 495, 703
BseGI GGATG 3 cut(s) 431, 461, 743
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 5 cut(s) 481, 551, 628, 720, 885
BseMII CTCAG 2 cut(s) 190, 967
BseNI ACTGG 5 cut(s) 156, 378, 521, 725, 922
BseRI GAGGAG 1 cut(s) 590
BseXI GCAGC 3 cut(s) 3, 389, 730
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 5 cut(s) 290, 352, 452, 520, 691
BshNI GGYRCC 2 cut(s) 141, 332
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 453
BslI CCNNNNNNNGG 5 cut(s) 481, 551, 628, 720, 885
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 5 cut(s) 290, 352, 452, 520, 691
BsoBI CYCGRG 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
Bsp1720I GCTNAGC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 3 cut(s) 292, 517, 879
BspANI GGCC 5 cut(s) 290, 352, 452, 520, 691
BspCNI CTCAG 2 cut(s) 189, 966
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 143, 334, 451
BspPI GGATC 3 cut(s) 118, 272, 758
BspT107I GGYRCC 2 cut(s) 141, 332
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 5 cut(s) 156, 378, 521, 725, 922
BssECI CCNNGG 5 cut(s) 137, 281, 385, 495, 703
BssMI GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 495, 703
Bst2UI CCWGG 4 cut(s) 139, 283, 337, 387
Bst4CI ACNGT 3 cut(s) 59, 146, 463
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 6 cut(s) 288, 292, 309, 313, 345, 382
BstDEI CTNAG 3 cut(s) 176, 303, 953
BstDSI CCRYGG 1 cut(s) 495
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 3 cut(s) 431, 461, 743
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 190, 952
BstKTI GATC 7 cut(s) 126, 175, 267, 472, 481, 766, 856
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
BstMWI GCNNNNNNNGC 4 cut(s) 46, 187, 308, 349
BstNI CCWGG 4 cut(s) 139, 283, 337, 387
BstSCI CCNGG 4 cut(s) 137, 281, 335, 385
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 3, 389, 730
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 5 cut(s) 290, 352, 452, 520, 691
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 431, 461, 743
BtsIMutI CAGTG 3 cut(s) 55, 371, 961
Cac8I GCNNGC 6 cut(s) 288, 292, 309, 313, 345, 382
CciI TCATGA 1 cut(s) 669
CfoI GCGC 2 cut(s) 190, 952
Cfr13I GGNCC 2 cut(s) 289, 450
CseI GACGC 1 cut(s) 278
CsiI ACCWGGT 1 cut(s) 335
Csp6I GTAC 4 cut(s) 459, 507, 776, 787
CviAII CATG 2 cut(s) 496, 670
CviQI GTAC 4 cut(s) 459, 507, 776, 787
DdeI CTNAG 3 cut(s) 176, 303, 953
DpnI GATC 7 cut(s) 125, 174, 266, 471, 480, 765, 855
DpnII GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
DraI TTTAAA 1 cut(s) 550
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 518
Eco130I CCWWGG 2 cut(s) 495, 703
Eco57I CTGAAG 1 cut(s) 878
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 594
EcoRII CCWGG 4 cut(s) 137, 281, 335, 385
EcoT14I CCWWGG 2 cut(s) 495, 703
ErhI CCWWGG 2 cut(s) 495, 703
FaeI CATG 2 cut(s) 499, 673
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FatI CATG 2 cut(s) 495, 669
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 4 cut(s) 17, 378, 518, 744
FokI GGATG 3 cut(s) 438, 468, 750
Fsp4HI GCNGC 4 cut(s) 17, 378, 518, 744
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 189, 951
GluI GCNGC 4 cut(s) 17, 378, 518, 744
HaeIII GGCC 5 cut(s) 290, 352, 452, 520, 691
HapII CCGG 1 cut(s) 453
HgaI GACGC 1 cut(s) 278
HhaI GCGC 2 cut(s) 190, 952
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 499, 673
Hin6I GCGC 2 cut(s) 188, 950
HinP1I GCGC 2 cut(s) 188, 950
HincII GTYRAC 2 cut(s) 414, 681
HindII GTYRAC 2 cut(s) 414, 681
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 4 cut(s) 151, 167, 896, 927
HpaII CCGG 1 cut(s) 453
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 2 cut(s) 414, 681
Hpy188I TCNGA 3 cut(s) 172, 569, 858
Hpy188III TCNNGA 5 cut(s) 164, 398, 482, 670, 839
Hpy8I GTNNAC 2 cut(s) 414, 681
Hpy99I CGWCG 2 cut(s) 10, 272
HpyAV CCTTC 3 cut(s) 60, 404, 853
HpyCH4III ACNGT 3 cut(s) 59, 146, 463
HpyCH4IV ACGT 2 cut(s) 5, 505
HpyCH4V TGCA 3 cut(s) 746, 833, 936
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 187, 308, 349
HpyF3I CTNAG 3 cut(s) 176, 303, 953
HpySE526I ACGT 2 cut(s) 5, 505
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 499, 673
HspAI GCGC 2 cut(s) 188, 950
Kzo9I GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
LmnI GCTCC 2 cut(s) 68, 725
Lsp1109I GCAGC 3 cut(s) 3, 389, 730
LweI GCATC 1 cut(s) 945
MabI ACCWGGT 1 cut(s) 335
MaeI CTAG 1 cut(s) 650
MaeII ACGT 2 cut(s) 5, 505
MalI GATC 7 cut(s) 125, 174, 266, 471, 480, 765, 855
MboI GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
MboII GAAGA 2 cut(s) 198, 860
MfeI CAATTG 1 cut(s) 575
MluCI AATT 4 cut(s) 575, 594, 613, 972
MluI ACGCGT 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 128, 628
MnlI CCTC 6 cut(s) 211, 326, 611, 675, 702, 879
MseI TTAA 6 cut(s) 132, 405, 443, 539, 549, 717
MslI CAYNNNNRTG 1 cut(s) 497
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 4 cut(s) 139, 283, 337, 387
MunI CAATTG 1 cut(s) 575
MvaI CCWGG 4 cut(s) 139, 283, 337, 387
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 46, 187, 308, 349
NcoI CCATGG 1 cut(s) 495
NdeII GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
NlaIII CATG 2 cut(s) 499, 673
NlaIV GGNNCC 3 cut(s) 143, 334, 451
OliI CACNNNNGTG 1 cut(s) 497
PagI TCATGA 1 cut(s) 669
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 209
PfeI GAWTC 4 cut(s) 151, 167, 896, 927
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 4 cut(s) 18, 379, 519, 745
Psp6I CCWGG 4 cut(s) 137, 281, 335, 385
PspGI CCWGG 4 cut(s) 137, 281, 335, 385
PspN4I GGNNCC 3 cut(s) 143, 334, 451
PspPI GGNCC 2 cut(s) 289, 450
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 4 cut(s) 460, 508, 777, 788
RsaNI GTAC 4 cut(s) 459, 507, 776, 787
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 6 cut(s) 132, 405, 443, 539, 549, 717
SatI GCNGC 4 cut(s) 17, 378, 518, 744
Sau3AI GATC 7 cut(s) 123, 172, 264, 469, 478, 763, 853
Sau96I GGNCC 2 cut(s) 289, 450
ScaI AGTACT 1 cut(s) 777
ScrFI CCNGG 4 cut(s) 139, 283, 337, 387
SexAI ACCWGGT 1 cut(s) 335
SfaNI GCATC 1 cut(s) 945
SfcI CTRYAG 1 cut(s) 771
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
Sse9I AATT 4 cut(s) 575, 594, 613, 972
SsiI CCGC 3 cut(s) 292, 517, 879
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 4 cut(s) 137, 281, 335, 385
StyI CCWWGG 2 cut(s) 495, 703
TaaI ACNGT 3 cut(s) 59, 146, 463
TaiI ACGT 2 cut(s) 8, 508
TaqI TCGA 4 cut(s) 197, 212, 267, 318
TasI AATT 4 cut(s) 575, 594, 613, 972
TatI WGTACW 2 cut(s) 775, 786
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 4 cut(s) 151, 167, 896, 927
Tru1I TTAA 6 cut(s) 132, 405, 443, 539, 549, 717
Tru9I TTAA 6 cut(s) 132, 405, 443, 539, 549, 717
TscAI CASTG 3 cut(s) 62, 378, 961
TseI GCWGC 3 cut(s) 16, 377, 743
TspDTI ATGAA 4 cut(s) 59, 198, 686, 990
TspRI CASTG 3 cut(s) 62, 378, 961
Tth111I GACNNNGTC 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 594
XspI CTAG 1 cut(s) 650
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.