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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5205 |
| AarI | CACCTGC | 1 cut(s) | 4247 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 5384 |
| AatII | GACGTC | 1 cut(s) | 7826 |
| Acc36I | ACCTGC | 3 cut(s) | 4247, 6251, 8131 |
| Acc65I | GGTACC | 1 cut(s) | 6263 |
| AccB1I | GGYRCC | 3 cut(s) | 42, 2624, 6263 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 7633 |
| AccBSI | CCGCTC | 4 cut(s) | 1164, 2245, 3196, 6659 |
| AccI | GTMKAC | 2 cut(s) | 2355, 6402 |
| AccII | CGCG | 2 cut(s) | 2284, 4465 |
| AccIII | TCCGGA | 1 cut(s) | 7890 |
| AcoI | YGGCCR | 5 cut(s) | 1038, 1207, 1785, 4155, 6567 |
| AcvI | CACGTG | 1 cut(s) | 997 |
| AcyI | GRCGYC | 3 cut(s) | 43, 7130, 7823 |
| AdeI | CACNNNGTG | 1 cut(s) | 7479 |
| AfeI | AGCGCT | 1 cut(s) | 7218 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1942, 2569, 3997, 4476, 5635, 7633 |
| AflII | CTTAAG | 1 cut(s) | 7459 |
| AflIII | ACRYGT | 2 cut(s) | 2223, 4264 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 6790, 7469 |
| AhlI | ACTAGT | 1 cut(s) | 182 |
| AjiI | CACGTC | 1 cut(s) | 6957 |
| AjnI | CCWGG | 8 cut(s) | 355, 1264, 1779, 3990, 4526, 4686, 5230, 6990 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 651, 683, 1649, 1681, 1809, 1841, 4926, 4958 |
| Alw44I | GTGCAC | 3 cut(s) | 2061, 5304, 7480 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 341, 518, 2587, 2791, 4313, 5276, 5437, 5579 |
| Ama87I | CYCGRG | 3 cut(s) | 2864, 4080, 4407 |
| Aor13HI | TCCGGA | 1 cut(s) | 7890 |
| Aor51HI | AGCGCT | 1 cut(s) | 7218 |
| ApaLI | GTGCAC | 3 cut(s) | 2061, 5304, 7480 |
| AseI | ATTAAT | 2 cut(s) | 1641, 2907 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 666, 1273, 1450, 4329, 5064, 7020, 7395 |
| Asp718I | GGTACC | 1 cut(s) | 6263 |
| AspLEI | GCGC | 7 cut(s) | 45, 349, 2284, 2286, 2369, 4467, 7219 |
| AspS9I | GGNCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| AsuC2I | CCSGG | 2 cut(s) | 4784, 7039 |
| AsuII | TTCGAA | 2 cut(s) | 2949, 4202 |
| AsuNHI | GCTAGC | 1 cut(s) | 7117 |
| AvaI | CYCGRG | 3 cut(s) | 2864, 4080, 4407 |
| AvaII | GGWCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| AxyI | CCTNAGG | 1 cut(s) | 1014 |
| BaeGI | GKGCMC | 5 cut(s) | 2065, 5308, 7039, 7484, 7517 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1653, 1686, 7434, 7467 |
| BalI | TGGCCA | 3 cut(s) | 1040, 1209, 6569 |
| BamHI | GGATCC | 1 cut(s) | 860 |
| BanI | GGYRCC | 3 cut(s) | 42, 2624, 6263 |
| BanII | GRGCYC | 6 cut(s) | 3063, 3301, 4527, 4593, 7377, 7749 |
| BauI | CACGAG | 2 cut(s) | 1091, 7323 |
| BbrPI | CACGTG | 1 cut(s) | 997 |
| BbsI | GAAGAC | 4 cut(s) | 741, 3372, 3770, 4247 |
| BbvCI | CCTCAGC | 2 cut(s) | 258, 3996 |
| BceAI | ACGGC | 1 cut(s) | 4468 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2606, 2640, 4148, 4182 |
| BciT130I | CCWGG | 8 cut(s) | 357, 1266, 1781, 3992, 4528, 4688, 5232, 6992 |
| BciVI | GTATCC | 2 cut(s) | 6607, 7435 |
| BclI | TGATCA | 7 cut(s) | 91, 1375, 2385, 2782, 4948, 6514, 7951 |
| BcnI | CCSGG | 2 cut(s) | 4784, 7039 |
| BcuI | ACTAGT | 1 cut(s) | 182 |
| BfoI | RGCGCY | 2 cut(s) | 46, 7220 |
| BfrI | CTTAAG | 1 cut(s) | 7459 |
| BfuAI | ACCTGC | 3 cut(s) | 4247, 6251, 8131 |
| BfuI | GTATCC | 2 cut(s) | 6607, 7435 |
| BglII | AGATCT | 3 cut(s) | 3281, 5422, 7018 |
| BlpI | GCTNAGC | 5 cut(s) | 1589, 4091, 5673, 5982, 7743 |
| BmcAI | AGTACT | 1 cut(s) | 1258 |
| Bme18I | GGWCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 6790, 7469 |
| BmeT110I | CYCGRG | 3 cut(s) | 2864, 4080, 4407 |
| BmgBI | CACGTC | 1 cut(s) | 6957 |
| BmgT120I | GGNCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| BmiI | GGNNCC | 7 cut(s) | 44, 328, 862, 2626, 6229, 6265, 7845 |
| BmrI | ACTGGG | 1 cut(s) | 8161 |
| BmtI | GCTAGC | 1 cut(s) | 7121 |
| BmuI | ACTGGG | 1 cut(s) | 8161 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1928 |
| BpiI | GAAGAC | 4 cut(s) | 741, 3372, 3770, 4247 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 848, 880, 1007, 1039, 3398, 3430 |
| BpmI | CTGGAG | 7 cut(s) | 1098, 2555, 2936, 3315, 4549, 4655, 6893 |
| Bpu10I | CCTNAGC | 2 cut(s) | 258, 3996 |
| Bpu1102I | GCTNAGC | 5 cut(s) | 1589, 4091, 5673, 5982, 7743 |
| Bpu14I | TTCGAA | 2 cut(s) | 2949, 4202 |
| BpuEI | CTTGAG | 5 cut(s) | 3356, 4591, 6445, 7790, 7805 |
| BpuMI | CCSGG | 2 cut(s) | 4784, 7039 |
| Bsa29I | ATCGAT | 1 cut(s) | 7874 |
| BsaAI | YACGTR | 1 cut(s) | 997 |
| BsaBI | GATNNNNATC | 6 cut(s) | 1218, 3929, 4383, 5427, 7941, 7986 |
| BsaHI | GRCGYC | 3 cut(s) | 43, 7130, 7823 |
| BsaI | GGTCTC | 2 cut(s) | 3977, 8098 |
| BsaWI | WCCGGW | 1 cut(s) | 7890 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 690, 720, 7885, 7915 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1942, 2569, 3997, 4476, 5635, 7633 |
| Bse21I | CCTNAGG | 1 cut(s) | 1014 |
| Bse3DI | GCAATG | 3 cut(s) | 3207, 4316, 6967 |
| Bse8I | GATNNNNATC | 6 cut(s) | 1218, 3929, 4383, 5427, 7941, 7986 |
| BseAI | TCCGGA | 1 cut(s) | 7890 |
| BseBI | CCWGG | 8 cut(s) | 357, 1266, 1781, 3992, 4528, 4688, 5232, 6992 |
| BseCI | ATCGAT | 1 cut(s) | 7874 |
| BseJI | GATNNNNATC | 6 cut(s) | 1218, 3929, 4383, 5427, 7941, 7986 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1942, 2569, 3997, 4476, 5635, 7633 |
| BseMI | GCAATG | 3 cut(s) | 3207, 4316, 6967 |
| BsePI | GCGCGC | 1 cut(s) | 2282 |
| BseRI | GAGGAG | 8 cut(s) | 246, 275, 2882, 3878, 3950, 4013, 4601, 7744 |
| BseSI | GKGCMC | 5 cut(s) | 2065, 5308, 7039, 7484, 7517 |
| BseYI | CCCAGC | 2 cut(s) | 38, 7063 |
| BsgI | GTGCAG | 2 cut(s) | 2774, 3932 |
| Bsh1236I | CGCG | 2 cut(s) | 2284, 4465 |
| BshNI | GGYRCC | 3 cut(s) | 42, 2624, 6263 |
| BshVI | ATCGAT | 1 cut(s) | 7874 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2864, 4080, 4407 |
| BsiSI | CCGG | 3 cut(s) | 4783, 7039, 7891 |
| BslFI | GGGAC | 2 cut(s) | 1588, 3988 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1942, 2569, 3997, 4476, 5635, 7633 |
| BsmBI | CGTCTC | 1 cut(s) | 1961 |
| BsmFI | GGGAC | 2 cut(s) | 1588, 3988 |
| BsmI | GAATGC | 4 cut(s) | 2704, 2803, 4974, 5875 |
| Bso31I | GGTCTC | 2 cut(s) | 3977, 8098 |
| BsoBI | CYCGRG | 3 cut(s) | 2864, 4080, 4407 |
| Bsp119I | TTCGAA | 2 cut(s) | 2949, 4202 |
| Bsp13I | TCCGGA | 1 cut(s) | 7890 |
| Bsp1407I | TGTACA | 2 cut(s) | 4540, 5475 |
| Bsp1720I | GCTNAGC | 5 cut(s) | 1589, 4091, 5673, 5982, 7743 |
| Bsp19I | CCATGG | 5 cut(s) | 322, 1317, 4722, 6813, 8074 |
| BspDI | ATCGAT | 1 cut(s) | 7874 |
| BspEI | TCCGGA | 1 cut(s) | 7890 |
| BspFNI | CGCG | 2 cut(s) | 2284, 4465 |
| BspHI | TCATGA | 4 cut(s) | 1153, 4951, 5922, 8112 |
| BspLI | GGNNCC | 7 cut(s) | 44, 328, 862, 2626, 6229, 6265, 7845 |
| BspMAI | CTGCAG | 6 cut(s) | 514, 940, 1132, 4179, 5007, 5544 |
| BspMI | ACCTGC | 3 cut(s) | 4247, 6251, 8131 |
| BspOI | GCTAGC | 1 cut(s) | 7121 |
| BspQI | GCTCTTC | 3 cut(s) | 2235, 5556, 6001 |
| BspT104I | TTCGAA | 2 cut(s) | 2949, 4202 |
| BspT107I | GGYRCC | 3 cut(s) | 42, 2624, 6263 |
| BspTI | CTTAAG | 1 cut(s) | 7459 |
| BspTNI | GGTCTC | 2 cut(s) | 3977, 8098 |
| BsrBI | CCGCTC | 4 cut(s) | 1164, 2245, 3196, 6659 |
| BsrDI | GCAATG | 3 cut(s) | 3207, 4316, 6967 |
| BsrGI | TGTACA | 2 cut(s) | 4540, 5475 |
| BssHII | GCGCGC | 1 cut(s) | 2282 |
| BssNI | GRCGYC | 3 cut(s) | 43, 7130, 7823 |
| BssSI | CACGAG | 2 cut(s) | 1091, 7323 |
| BssT1I | CCWWGG | 8 cut(s) | 124, 322, 1317, 3909, 4722, 5496, 6813, 8074 |
| Bst2BI | CACGAG | 2 cut(s) | 1091, 7323 |
| Bst2UI | CCWGG | 8 cut(s) | 357, 1266, 1781, 3992, 4528, 4688, 5232, 6992 |
| BstACI | GRCGYC | 3 cut(s) | 43, 7130, 7823 |
| BstAFI | CTTAAG | 1 cut(s) | 7459 |
| BstAUI | TGTACA | 2 cut(s) | 4540, 5475 |
| BstBAI | YACGTR | 1 cut(s) | 997 |
| BstBI | TTCGAA | 2 cut(s) | 2949, 4202 |
| BstDSI | CCRYGG | 6 cut(s) | 322, 1317, 1926, 4722, 6813, 8074 |
| BstEII | GGTNACC | 1 cut(s) | 1930 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1940, 2567 |
| BstFNI | CGCG | 2 cut(s) | 2284, 4465 |
| BstH2I | RGCGCY | 2 cut(s) | 46, 7220 |
| BstHHI | GCGC | 7 cut(s) | 45, 349, 2284, 2286, 2369, 4467, 7219 |
| BstNI | CCWGG | 8 cut(s) | 357, 1266, 1781, 3992, 4528, 4688, 5232, 6992 |
| BstNSI | RCATGY | 4 cut(s) | 2227, 5444, 6696, 8168 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1928 |
| BstPI | GGTNACC | 1 cut(s) | 1930 |
| BstSLI | GKGCMC | 5 cut(s) | 2065, 5308, 7039, 7484, 7517 |
| BstUI | CGCG | 2 cut(s) | 2284, 4465 |
| BstV2I | GAAGAC | 4 cut(s) | 741, 3372, 3770, 4247 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4729 |
| Bsu15I | ATCGAT | 1 cut(s) | 7874 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1014 |
| BsuI | GTATCC | 2 cut(s) | 6607, 7435 |
| BsuTUI | ATCGAT | 1 cut(s) | 7874 |
| BtgI | CCRYGG | 6 cut(s) | 322, 1317, 1926, 4722, 6813, 8074 |
| BtgZI | GCGATG | 1 cut(s) | 6889 |
| BtrI | CACGTC | 1 cut(s) | 6957 |
| BtsI | GCAGTG | 2 cut(s) | 1563, 5435 |
| BveI | ACCTGC | 3 cut(s) | 4247, 6251, 8131 |
| CaiI | CAGNNNCTG | 8 cut(s) | 341, 518, 2587, 2791, 4313, 5276, 5437, 5579 |
| CciI | TCATGA | 4 cut(s) | 1153, 4951, 5922, 8112 |
| CfoI | GCGC | 7 cut(s) | 45, 349, 2284, 2286, 2369, 4467, 7219 |
| Cfr13I | GGNCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| ClaI | ATCGAT | 1 cut(s) | 7874 |
| CseI | GACGC | 7 cut(s) | 1054, 1978, 3730, 4217, 7119, 7647, 8116 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 7338, 7373 |
| DinI | GGCGCC | 1 cut(s) | 44 |
| DraIII | CACNNNGTG | 1 cut(s) | 7479 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 5384 |
| DriI | GACNNNNNGTC | 2 cut(s) | 6790, 7469 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 5384 |
| EaeI | YGGCCR | 5 cut(s) | 1038, 1207, 1785, 4155, 6567 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 6790, 7469 |
| Ecl136II | GAGCTC | 5 cut(s) | 3061, 3299, 4591, 7375, 7747 |
| Eco130I | CCWWGG | 8 cut(s) | 124, 322, 1317, 3909, 4722, 5496, 6813, 8074 |
| Eco147I | AGGCCT | 1 cut(s) | 7205 |
| Eco24I | GRGCYC | 6 cut(s) | 3063, 3301, 4527, 4593, 7377, 7749 |
| Eco31I | GGTCTC | 2 cut(s) | 3977, 8098 |
| Eco32I | GATATC | 3 cut(s) | 421, 501, 4702 |
| Eco47I | GGWCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| Eco47III | AGCGCT | 1 cut(s) | 7218 |
| Eco53kI | GAGCTC | 5 cut(s) | 3061, 3299, 4591, 7375, 7747 |
| Eco72I | CACGTG | 1 cut(s) | 997 |
| Eco81I | CCTNAGG | 1 cut(s) | 1014 |
| Eco88I | CYCGRG | 3 cut(s) | 2864, 4080, 4407 |
| Eco91I | GGTNACC | 1 cut(s) | 1930 |
| EcoICRI | GAGCTC | 5 cut(s) | 3061, 3299, 4591, 7375, 7747 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1940, 2567 |
| EcoO65I | GGTNACC | 1 cut(s) | 1930 |
| EcoRI | GAATTC | 1 cut(s) | 4198 |
| EcoRII | CCWGG | 8 cut(s) | 355, 1264, 1779, 3990, 4526, 4686, 5230, 6990 |
| EcoRV | GATATC | 3 cut(s) | 421, 501, 4702 |
| EcoT14I | CCWWGG | 8 cut(s) | 124, 322, 1317, 3909, 4722, 5496, 6813, 8074 |
| EcoT22I | ATGCAT | 1 cut(s) | 547 |
| EcoT38I | GRGCYC | 6 cut(s) | 3063, 3301, 4527, 4593, 7377, 7749 |
| EgeI | GGCGCC | 1 cut(s) | 44 |
| EheI | GGCGCC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 8 cut(s) | 124, 322, 1317, 3909, 4722, 5496, 6813, 8074 |
| Esp3I | CGTCTC | 1 cut(s) | 1961 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 4645, 4677, 6398, 6430, 6720, 6752, 7752, 7784 |
| FaqI | GGGAC | 2 cut(s) | 1588, 3988 |
| FauI | CCCGC | 2 cut(s) | 3189, 4498 |
| FauNDI | CATATG | 1 cut(s) | 6091 |
| FbaI | TGATCA | 7 cut(s) | 91, 1375, 2385, 2782, 4948, 6514, 7951 |
| FblI | GTMKAC | 2 cut(s) | 2355, 6402 |
| FriOI | GRGCYC | 6 cut(s) | 3063, 3301, 4527, 4593, 7377, 7749 |
| GlaI | GCGC | 7 cut(s) | 44, 348, 2283, 2285, 2368, 4466, 7218 |
| GsaI | CCCAGC | 2 cut(s) | 42, 7067 |
| GsuI | CTGGAG | 7 cut(s) | 1098, 2555, 2936, 3315, 4549, 4655, 6893 |
| HaeII | RGCGCY | 2 cut(s) | 46, 7220 |
| HapII | CCGG | 3 cut(s) | 4783, 7039, 7891 |
| HgaI | GACGC | 7 cut(s) | 1054, 1978, 3730, 4217, 7119, 7647, 8116 |
| HhaI | GCGC | 7 cut(s) | 45, 349, 2284, 2286, 2369, 4467, 7219 |
| Hin1I | GRCGYC | 3 cut(s) | 43, 7130, 7823 |
| Hin6I | GCGC | 7 cut(s) | 43, 347, 2282, 2284, 2367, 4465, 7217 |
| HinP1I | GCGC | 7 cut(s) | 43, 347, 2282, 2284, 2367, 4465, 7217 |
| HincII | GTYRAC | 2 cut(s) | 2229, 2709 |
| HindII | GTYRAC | 2 cut(s) | 2229, 2709 |
| HindIII | AAGCTT | 5 cut(s) | 50, 2655, 4088, 5927, 7317 |
| HpaI | GTTAAC | 1 cut(s) | 2709 |
| HpaII | CCGG | 3 cut(s) | 4783, 7039, 7891 |
| Hpy99I | CGWCG | 1 cut(s) | 7825 |
| Hsp92I | GRCGYC | 3 cut(s) | 43, 7130, 7823 |
| HspAI | GCGC | 7 cut(s) | 43, 347, 2282, 2284, 2367, 4465, 7217 |
| KasI | GGCGCC | 1 cut(s) | 42 |
| Kpn2I | TCCGGA | 1 cut(s) | 7890 |
| KpnI | GGTACC | 1 cut(s) | 6267 |
| Ksp22I | TGATCA | 7 cut(s) | 91, 1375, 2385, 2782, 4948, 6514, 7951 |
| KspAI | GTTAAC | 1 cut(s) | 2709 |
| LguI | GCTCTTC | 3 cut(s) | 2235, 5556, 6001 |
| MbiI | CCGCTC | 4 cut(s) | 1164, 2245, 3196, 6659 |
| MfeI | CAATTG | 4 cut(s) | 1052, 1768, 5795, 6627 |
| MlsI | TGGCCA | 3 cut(s) | 1040, 1209, 6569 |
| MluNI | TGGCCA | 3 cut(s) | 1040, 1209, 6569 |
| Mly113I | GGCGCC | 1 cut(s) | 43 |
| MmeI | TCCRAC | 8 cut(s) | 1260, 1590, 3597, 4819, 5730, 6624, 6721, 7675 |
| Mox20I | TGGCCA | 3 cut(s) | 1040, 1209, 6569 |
| Mph1103I | ATGCAT | 1 cut(s) | 547 |
| MroI | TCCGGA | 1 cut(s) | 7890 |
| MroXI | GAANNNNTTC | 7 cut(s) | 666, 1273, 1450, 4329, 5064, 7020, 7395 |
| MscI | TGGCCA | 3 cut(s) | 1040, 1209, 6569 |
| MslI | CAYNNNNRTG | 9 cut(s) | 249, 309, 540, 1152, 2907, 4401, 4727, 6299, 8038 |
| Msp20I | TGGCCA | 3 cut(s) | 1040, 1209, 6569 |
| MspA1I | CMGCKG | 9 cut(s) | 818, 1007, 1048, 3115, 3542, 6014, 6128, 6836, 7063 |
| MspCI | CTTAAG | 1 cut(s) | 7459 |
| MspI | CCGG | 3 cut(s) | 4783, 7039, 7891 |
| MunI | CAATTG | 4 cut(s) | 1052, 1768, 5795, 6627 |
| Mva1269I | GAATGC | 4 cut(s) | 2704, 2803, 4974, 5875 |
| MvaI | CCWGG | 8 cut(s) | 357, 1266, 1781, 3992, 4528, 4688, 5232, 6992 |
| MvnI | CGCG | 2 cut(s) | 2284, 4465 |
| NarI | GGCGCC | 1 cut(s) | 43 |
| NciI | CCSGG | 2 cut(s) | 4784, 7039 |
| NcoI | CCATGG | 5 cut(s) | 322, 1317, 4722, 6813, 8074 |
| NdeI | CATATG | 1 cut(s) | 6091 |
| NheI | GCTAGC | 1 cut(s) | 7117 |
| NlaIV | GGNNCC | 7 cut(s) | 44, 328, 862, 2626, 6229, 6265, 7845 |
| NsiI | ATGCAT | 1 cut(s) | 547 |
| NspI | RCATGY | 4 cut(s) | 2227, 5444, 6696, 8168 |
| NspV | TTCGAA | 2 cut(s) | 2949, 4202 |
| PaeI | GCATGC | 1 cut(s) | 8168 |
| PaeR7I | CTCGAG | 2 cut(s) | 2864, 4080 |
| PagI | TCATGA | 4 cut(s) | 1153, 4951, 5922, 8112 |
| PaqCI | CACCTGC | 1 cut(s) | 4247 |
| PauI | GCGCGC | 1 cut(s) | 2282 |
| PceI | AGGCCT | 1 cut(s) | 7205 |
| PciI | ACATGT | 1 cut(s) | 2223 |
| PciSI | GCTCTTC | 3 cut(s) | 2235, 5556, 6001 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5870 |
| PctI | GAATGC | 4 cut(s) | 2704, 2803, 4974, 5875 |
| PdmI | GAANNNNTTC | 7 cut(s) | 666, 1273, 1450, 4329, 5064, 7020, 7395 |
| PflFI | GACNNNGTC | 2 cut(s) | 4139, 5249 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 7633 |
| PfoI | TCCNGGA | 1 cut(s) | 4686 |
| PluTI | GGCGCC | 1 cut(s) | 46 |
| PmaCI | CACGTG | 1 cut(s) | 997 |
| PmlI | CACGTG | 1 cut(s) | 997 |
| Ppu21I | YACGTR | 1 cut(s) | 997 |
| PscI | ACATGT | 1 cut(s) | 2223 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1928 |
| PshBI | ATTAAT | 2 cut(s) | 1641, 2907 |
| PsiI | TTATAA | 1 cut(s) | 5205 |
| Psp124BI | GAGCTC | 5 cut(s) | 3063, 3301, 4593, 7377, 7749 |
| Psp6I | CCWGG | 8 cut(s) | 355, 1264, 1779, 3990, 4526, 4686, 5230, 6990 |
| PspCI | CACGTG | 1 cut(s) | 997 |
| PspEI | GGTNACC | 1 cut(s) | 1930 |
| PspFI | CCCAGC | 2 cut(s) | 38, 7063 |
| PspGI | CCWGG | 8 cut(s) | 355, 1264, 1779, 3990, 4526, 4686, 5230, 6990 |
| PspN4I | GGNNCC | 7 cut(s) | 44, 328, 862, 2626, 6229, 6265, 7845 |
| PspPI | GGNCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| PspXI | VCTCGAGB | 1 cut(s) | 2864 |
| PstI | CTGCAG | 6 cut(s) | 514, 940, 1132, 4179, 5007, 5544 |
| PstNI | CAGNNNCTG | 8 cut(s) | 341, 518, 2587, 2791, 4313, 5276, 5437, 5579 |
| PsyI | GACNNNGTC | 2 cut(s) | 4139, 5249 |
| PteI | GCGCGC | 1 cut(s) | 2282 |
| PvuII | CAGCTG | 7 cut(s) | 818, 1007, 1048, 3115, 6014, 6836, 7063 |
| RseI | CAYNNNNRTG | 9 cut(s) | 249, 309, 540, 1152, 2907, 4401, 4727, 6299, 8038 |
| SacI | GAGCTC | 5 cut(s) | 3063, 3301, 4593, 7377, 7749 |
| SapI | GCTCTTC | 3 cut(s) | 2235, 5556, 6001 |
| Sau96I | GGNCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| ScaI | AGTACT | 1 cut(s) | 1258 |
| SfoI | GGCGCC | 1 cut(s) | 44 |
| Sfr274I | CTCGAG | 2 cut(s) | 2864, 4080 |
| SfuI | TTCGAA | 2 cut(s) | 2949, 4202 |
| SinI | GGWCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| SlaI | CTCGAG | 2 cut(s) | 2864, 4080 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 249, 309, 540, 1152, 2907, 4401, 4727, 6299, 8038 |
| SmlI | CTYRAG | 8 cut(s) | 2864, 3371, 4080, 4570, 6424, 7459, 7769, 7784 |
| SmoI | CTYRAG | 8 cut(s) | 2864, 3371, 4080, 4570, 6424, 7459, 7769, 7784 |
| SpeI | ACTAGT | 1 cut(s) | 182 |
| SphI | GCATGC | 1 cut(s) | 8168 |
| SseBI | AGGCCT | 1 cut(s) | 7205 |
| SspDI | GGCGCC | 1 cut(s) | 42 |
| SspI | AATATT | 2 cut(s) | 4696, 6592 |
| SstI | GAGCTC | 5 cut(s) | 3063, 3301, 4593, 7377, 7749 |
| StuI | AGGCCT | 1 cut(s) | 7205 |
| StyI | CCWWGG | 8 cut(s) | 124, 322, 1317, 3909, 4722, 5496, 6813, 8074 |
| TaqII | GACCGA | 1 cut(s) | 2606 |
| TatI | WGTACW | 8 cut(s) | 116, 1256, 4540, 4757, 5475, 5963, 6386, 7546 |
| TauI | GCSGC | 4 cut(s) | 640, 1164, 1787, 6659 |
| TspGWI | ACGGA | 3 cut(s) | 2686, 3071, 6656 |
| Tth111I | GACNNNGTC | 2 cut(s) | 4139, 5249 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 7633 |
| Vha464I | CTTAAG | 1 cut(s) | 7459 |
| VneI | GTGCAC | 3 cut(s) | 2061, 5304, 7480 |
| VpaK11BI | GGWCC | 4 cut(s) | 1829, 2899, 5626, 6810 |
| VspI | ATTAAT | 2 cut(s) | 1641, 2907 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1940, 2567 |
| XbaI | TCTAGA | 3 cut(s) | 2050, 2254, 6002 |
| XceI | RCATGY | 4 cut(s) | 2227, 5444, 6696, 8168 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 8037 |
| XhoI | CTCGAG | 2 cut(s) | 2864, 4080 |
| XmiI | GTMKAC | 2 cut(s) | 2355, 6402 |
| XmnI | GAANNNNTTC | 7 cut(s) | 666, 1273, 1450, 4329, 5064, 7020, 7395 |
| ZraI | GACGTC | 1 cut(s) | 7824 |
| ZrmI | AGTACT | 1 cut(s) | 1258 |
| Zsp2I | ATGCAT | 1 cut(s) | 547 |