Rorug06G0337700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001092
Physical Location & Seq
Forward (+)
48972233 .. 48975213
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0337700.1

Sequence Viewer

Length: 1119 bp
ATGGCGGTGCCGGTCTTCAACCTCGCTCCGAATCTGATGGTTTCAAGGCTGTGCTTGGGAACCATGACTTTCGGCGAGCAAAACACGCTGCCGGAGTCCTTTCGCCTCCTCGACCAAGCTTTCAACTCCGGAATCAACTTCTTCGACTCTGCGGAGATGTACCCGGTGGTTCAGCGAGCCCAGACTCAGGGCAGGAGCGAGGAGTATCTCGGCCGTTGGATTAGAGAGCGCAACATTCCTCGAGACAGCGTCGTTTTGGCCACCAAGGTGACCGGACCATCTGGGCAGATGACTTGGATAAGAGATGGCCCGAAGTGTTTGGATGCTGCGAATATCACTGAGGCCATTGACAGCAGTTTACGGCGATTGCAGACAGATTACATTGATCTTTATCAGATACACTGGCCTGATCGATATGTTCCGATGTTTGGAGAAACTGAATATGATCCAACCAGGCAATTTGGTTCGATTCCTATAGAGGAACAACTTGATGCTCTTGGGAGAGCTGTTGATTCTGGTAAGGTCAGATATGTTGGTCTCAGTAATGAAACGGCATATGGTGTGATGAAGTTTCTTCAGGTGGCTGAAAGAGGCACTCACCTTCCAAAGATTGTATCTGTGCAGAACTCATACAGCTTGCTATGTCGAACTTTTGATTCTGGATTGGCTGAATGCTGTCATCATGAGAGGGTCAGTTTATTAGCTTACAGCCCTCTTGCAATGGGTATACTCTCTGGGAAGTATTTTTCACCGGAAGGCGGTCCTTCAGATGCTCGGTTGAACCTTTTCAGAGGAAAGTATTCAGAAGGGGAGTCCAGATACAACTTGACTAATCCCTCCATAAGGGCAGCAAGCATGGAATACATTCGTACTGCAGAAAAGTACGGTCTTCATCCAGTATCTCTTGCAATTGCCTTTGTTTTGAGTCACCCTCTCGTAGCAAGTATTGTCTTTGGAGCAACCCAGTCATGGCAACTTCAGGAAGTTCTTGATGCATGCAAGGTGGAGCTCACATCCGAAGTAATGGTAGAAATCAACAAGAATCTATCAGCCTTCTGCATTACAATCCTTTCTGAAAAGCTTCCGATGGGTCTGCGAGACAAGCATGTGCAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

41.7

Weight (kDa)

5.87

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 16 - 347 4.7e-69 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 727
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 3 cut(s) 5, 152, 759
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 2 cut(s) 211, 258
AcuI CTGAAG 3 cut(s) 560, 750, 962
AfaI GTAC 3 cut(s) 161, 871, 884
AfiI CCNNNNNNNGG 5 cut(s) 187, 428, 758, 843, 969
AgsI TTSAA 4 cut(s) 19, 45, 124, 781
AjnI CCWGG 1 cut(s) 452
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 6 cut(s) 119, 506, 636, 704, 1009, 1081
AluI AGCT 6 cut(s) 119, 506, 636, 704, 1009, 1081
Alw21I GWGCWC 1 cut(s) 1011
Alw26I GTCTC 3 cut(s) 237, 542, 1092
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 240
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 5 cut(s) 211, 258, 307, 342, 404
ApeKI GCWGC 3 cut(s) 88, 326, 848
Asp700I GAANNNNTTC 4 cut(s) 785, 799, 864, 1080
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 3 cut(s) 275, 308, 761
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 4 cut(s) 280, 590, 741, 920
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 2 cut(s) 275, 761
BalI TGGCCA 1 cut(s) 260
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 181, 1011
BbsI GAAGAC 2 cut(s) 7, 881
Bbv12I GWGCWC 1 cut(s) 1011
BbvI GCAGC 3 cut(s) 75, 313, 860
BccI CCATC 4 cut(s) 31, 286, 299, 1081
BceAI ACGGC 3 cut(s) 198, 377, 567
BcgI CGANNNNNNTGC 2 cut(s) 1075, 1109
BciT130I CCWGG 1 cut(s) 454
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 3 cut(s) 237, 542, 1092
BfmI CTRYAG 2 cut(s) 474, 873
BisI GCNGC 3 cut(s) 89, 327, 849
BlsI GCNGC 3 cut(s) 90, 328, 850
Bme1390I CCNGG 2 cut(s) 164, 454
Bme18I GGWCC 2 cut(s) 275, 761
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 275, 308, 761
BmiI GGNNCC 2 cut(s) 9, 61
BmrFI CCNGG 2 cut(s) 164, 454
BmrI ACTGGG 1 cut(s) 958
BmsI GCATC 4 cut(s) 313, 481, 760, 982
BmuI ACTGGG 1 cut(s) 958
BpiI GAAGAC 2 cut(s) 7, 881
BplI GAGNNNNNCTC 2 cut(s) 916, 948
BpuMI CCSGG 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 3 cut(s) 128, 272, 751
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 428, 758, 843, 969
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 3 cut(s) 407, 896, 964
Bse3DI GCAATG 2 cut(s) 726, 1118
Bse8I GATNNNNATC 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 128
BseBI CCWGG 1 cut(s) 454
BseCI ATCGAT 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 328, 892, 1013
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 5 cut(s) 187, 428, 758, 843, 969
BseMI GCAATG 2 cut(s) 726, 1118
BseMII CTCAG 3 cut(s) 200, 330, 553
BseNI ACTGG 3 cut(s) 407, 896, 964
BseRI GAGGAG 2 cut(s) 98, 215
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 75, 313, 860
BsgI GTGCAG 1 cut(s) 641
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 5 cut(s) 213, 260, 309, 344, 406
BshNI GGYRCC 1 cut(s) 7
BshVI ATCGAT 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 1011
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 6 cut(s) 11, 92, 129, 164, 273, 752
BslI CCNNNNNNNGG 5 cut(s) 187, 428, 758, 843, 969
BsmAI GTCTC 3 cut(s) 237, 542, 1092
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 5 cut(s) 213, 260, 309, 344, 406
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 181, 1011
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 3 cut(s) 385, 409, 445
BspACI CCGC 3 cut(s) 5, 152, 759
BspANI GGCC 5 cut(s) 213, 260, 309, 344, 406
BspCNI CTCAG 3 cut(s) 199, 331, 552
BspDI ATCGAT 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 128
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 9, 61
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 726, 1118
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 3 cut(s) 407, 896, 964
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 385, 409, 445
BssNAI GTATAC 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 264
Bst1107I GTATAC 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 887
BstC8I GCNNGC 5 cut(s) 77, 177, 638, 853, 997
BstDEI CTNAG 3 cut(s) 186, 339, 539
BstEII GGTNACC 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 841
BstF5I GGATG 3 cut(s) 328, 892, 1013
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 388, 412, 448
BstMAI GTCTC 3 cut(s) 237, 542, 1092
BstMBI GATC 3 cut(s) 385, 409, 445
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 85, 1102
BstNI CCWGG 1 cut(s) 454
BstNSI RCATGY 2 cut(s) 999, 1109
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 162, 452
BstSFI CTRYAG 2 cut(s) 474, 873
BstV1I GCAGC 3 cut(s) 75, 313, 860
BstV2I GAAGAC 2 cut(s) 7, 881
BstZ17I GTATAC 1 cut(s) 728
BstZI CGGCCG 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 412
BsuRI GGCC 5 cut(s) 213, 260, 309, 344, 406
BsuTUI ATCGAT 1 cut(s) 412
BtsCI GGATG 3 cut(s) 328, 892, 1013
BtsIMutI CAGTG 2 cut(s) 336, 400
Cac8I GCNNGC 5 cut(s) 77, 177, 638, 853, 997
CciI TCATGA 1 cut(s) 682
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 275, 308, 761
ClaI ATCGAT 1 cut(s) 412
CseI GACGC 1 cut(s) 238
Csp6I GTAC 3 cut(s) 160, 870, 883
CviAII CATG 6 cut(s) 64, 683, 856, 969, 996, 1106
CviQI GTAC 3 cut(s) 160, 870, 883
DdeI CTNAG 3 cut(s) 186, 339, 539
DpnI GATC 3 cut(s) 387, 411, 447
DpnII GATC 3 cut(s) 385, 409, 445
EaeI YGGCCR 2 cut(s) 211, 258
EagI CGGCCG 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 1009
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 2 cut(s) 181, 1011
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 275, 761
Eco52I CGGCCG 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 3 cut(s) 560, 750, 962
Eco88I CYCGRG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 1009
EcoNI CCTNNNNNAGG 1 cut(s) 841
EcoO65I GGTNACC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 2 cut(s) 181, 1011
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 6 cut(s) 67, 686, 859, 972, 999, 1109
FatI CATG 6 cut(s) 63, 682, 855, 968, 995, 1105
FauNDI CATATG 1 cut(s) 556
FblI GTMKAC 1 cut(s) 727
Fnu4HI GCNGC 3 cut(s) 89, 327, 849
FokI GGATG 3 cut(s) 335, 879, 1000
FriOI GRGCYC 2 cut(s) 181, 1011
Fsp4HI GCNGC 3 cut(s) 89, 327, 849
GlaI GCGC 1 cut(s) 230
GluI GCNGC 3 cut(s) 89, 327, 849
HaeIII GGCC 5 cut(s) 213, 260, 309, 344, 406
HapII CCGG 6 cut(s) 11, 92, 129, 164, 273, 752
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 231
Hin1II CATG 6 cut(s) 67, 686, 859, 972, 999, 1109
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HindIII AAGCTT 2 cut(s) 117, 1079
HpaII CCGG 6 cut(s) 11, 92, 129, 164, 273, 752
HphI GGTGA 4 cut(s) 280, 590, 741, 920
Hpy166II GTNNAC 2 cut(s) 359, 728
Hpy188III TCNNGA 7 cut(s) 129, 242, 660, 683, 816, 980, 989
Hpy8I GTNNAC 2 cut(s) 359, 728
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 5 cut(s) 611, 749, 774, 800, 1063
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4V TGCA 9 cut(s) 370, 622, 719, 875, 908, 995, 999, 1059, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 1102
HpyF3I CTNAG 3 cut(s) 186, 339, 539
Hsp92II CATG 6 cut(s) 67, 686, 859, 972, 999, 1109
HspAI GCGC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 128
Kzo9I GATC 3 cut(s) 385, 409, 445
LmnI GCTCC 4 cut(s) 31, 195, 956, 1006
Lsp1109I GCAGC 3 cut(s) 75, 313, 860
LweI GCATC 4 cut(s) 313, 481, 760, 982
MaeIII GTNAC 2 cut(s) 268, 926
MalI GATC 3 cut(s) 387, 411, 447
MboI GATC 3 cut(s) 385, 409, 445
MboII GAAGA 4 cut(s) 7, 133, 566, 881
MfeI CAATTG 1 cut(s) 909
MhlI GDGCHC 2 cut(s) 181, 1011
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 458, 909
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 5 cut(s) 104, 140, 178, 821, 934
MmeI TCCRAC 2 cut(s) 197, 473
Mox20I TGGCCA 1 cut(s) 260
Mph1103I ATGCAT 1 cut(s) 997
MroI TCCGGA 1 cut(s) 128
MroXI GAANNNNTTC 4 cut(s) 785, 799, 864, 1080
MscI TGGCCA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 6 cut(s) 11, 92, 129, 164, 273, 752
MspR9I CCNGG 2 cut(s) 164, 454
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 85, 1102
NciI CCSGG 1 cut(s) 164
NdeI CATATG 1 cut(s) 556
NdeII GATC 3 cut(s) 385, 409, 445
NlaIII CATG 6 cut(s) 67, 686, 859, 972, 999, 1109
NlaIV GGNNCC 2 cut(s) 9, 61
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 268, 926
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 2 cut(s) 999, 1109
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 1 cut(s) 999
PaeR7I CTCGAG 1 cut(s) 240
PagI TCATGA 1 cut(s) 682
PctI GAATGC 1 cut(s) 677
PdmI GAANNNNTTC 4 cut(s) 785, 799, 864, 1080
PfeI GAWTC 6 cut(s) 31, 132, 469, 512, 656, 1042
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 3 cut(s) 90, 328, 850
PleI GAGTC 5 cut(s) 103, 140, 178, 820, 933
PpsI GAGTC 5 cut(s) 103, 140, 178, 820, 933
Psp124BI GAGCTC 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 452
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 9, 61
PspPI GGNCC 3 cut(s) 275, 308, 761
PstI CTGCAG 1 cut(s) 877
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 3 cut(s) 161, 871, 884
RsaNI GTAC 3 cut(s) 160, 870, 883
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 1011
SatI GCNGC 3 cut(s) 89, 327, 849
Sau3AI GATC 3 cut(s) 385, 409, 445
Sau96I GGNCC 3 cut(s) 275, 308, 761
SchI GAGTC 5 cut(s) 104, 140, 178, 821, 934
ScrFI CCNGG 2 cut(s) 164, 454
SduI GDGCHC 2 cut(s) 181, 1011
SfaNI GCATC 4 cut(s) 313, 481, 760, 982
SfcI CTRYAG 2 cut(s) 474, 873
Sfr274I CTCGAG 1 cut(s) 240
SinI GGWCC 2 cut(s) 275, 761
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SphI GCATGC 1 cut(s) 999
Sse9I AATT 2 cut(s) 458, 909
SsiI CCGC 3 cut(s) 5, 152, 759
SstI GAGCTC 1 cut(s) 1011
StyD4I CCNGG 2 cut(s) 162, 452
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 887
TaqI TCGA 6 cut(s) 111, 144, 241, 412, 467, 646
TasI AATT 2 cut(s) 458, 909
TfiI GAWTC 6 cut(s) 31, 132, 469, 512, 656, 1042
TscAI CASTG 2 cut(s) 343, 407
TseFI GTSAC 2 cut(s) 268, 926
TseI GCWGC 3 cut(s) 88, 326, 848
Tsp45I GTSAC 2 cut(s) 268, 926
TspDTI ATGAA 3 cut(s) 561, 581, 881
TspRI CASTG 2 cut(s) 343, 407
Tth111I GACNNNGTC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 275, 761
XagI CCTNNNNNAGG 1 cut(s) 841
XceI RCATGY 2 cut(s) 999, 1109
XhoI CTCGAG 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 727
XmnI GAANNNNTTC 4 cut(s) 785, 799, 864, 1080
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.