Rroxscaffold_7G00163130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001092
Physical Location & Seq
Reverse (-)
5491786 .. 5502528
10743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163130.1

Sequence Viewer

Length: 7695 bp
ATGGACAAGGACAAGAGCCGTACCGACCTGCTCGCTGCTGGCCGTAAAAAGCTTCAACAATTTCGTCAGAAGAAGGATAAAGGCAGTGGAAGCCAGGGAAAATCCACAAAAAAGTCTGGAAAATCAGAGCAGCATGGGGCTGTTGCTGATGCAGTCTCAACTGCAACTAAACCTGCAGCATCCATGAAGTCTGGAAAATCAGAGCAGCATGAGGCTGTTGCTGATGCGGTCTCAACTGCAACTAAACCTACAGCATCGTCTCAGTTCCGTGACGGAGAAATTAAGCCTGCTGTAGGTTCTAATTCAGGAACTGTCAACACATCAGAGTCAAATTCTGTAGAGAATTCTGCAGACTCTGACACTAGTGTAGCTGTTGCTCGTCCCTCGGCAGTGCTTATTACACAGGAGAAAAGTGTGGTTGAAACCAAATTGGGGGAAAATGCCGAATCGCCATCAGAGGAGGTGGGGGCTAGTAAGCGTGATGCTGACTCTTCTGTTCAGATTGAAGGTGAGAGTACTGGGACTGCTGATGCTGAGGTGGCAAGAGACATTTCATTGGACACTTCACATACAGTGGATTCTGGGGGAGAAGCCAAGAATTCAAAGATGTCTATACAGGTTGATGTATCAGCGCAACATCCTTCAGTTGATATTACAGACGGGATGTCCATTACTGTTGAATCAGATATTCCAAGTAGGGAAAAGGAGTCATTGCCTTCAGTGGAAAATATTAATACATCCTTATTGCAGGATAGGGAAGATCATGTAACAGATGAAGAATTACAGCAGTTAAATGCTTTGTCTCTCCAGCGTGAAAGTGAAATCATAGTTCCAAGGGAAAGTTTAGCTGTTGTTGGTCCCTCGGCAGTGCCAATTACAGAGGAGAAAAGTGTGGTTGAAACCAAATTGGAGAAAAATGCCGAATCGTCATCAGAGGAAGTGGGGTTTAGTAAGCGTGATGCTGACTCTTCTGTTCAGAATGAAGGTGAGAGTACTGGGACTGCTGATGCTGAGATGGCAAGAGACAACTCATTGGGCACTTCACATACAGTGGATTCTGGAGGAGAAGCCGAAAATTTAAATGTGTCTATGCAGGTTGATGAATCGGCCCAACATGCTTCAGTCGATATTACAGAGGGGATGTCCGTCACTGTTGAATCAGAGATCCCGAGTAGGGAAAAGGAGTCAATGCCTTCACGGGAAAATATTAATACATCCTTAATGCAGGAGAGGGAAGATCAGGTAACAGATGAAGAAGTACAGCAGTTAAATGCCTTGTCTCTCCAGCCTTGTCTCTCAACTGCAACTAAACCTACAGCATTATCTTGGGTCTGTGACAGAGAAATTAAGTCTGTTGTAGGTTCTAATTCAGGAATTGTCAACACATCAGAGTCAAATTCTGTAGAGAATTCTGCAGACTCTGACATTAGTGTGGTTGTTGCTGGTCCCTCAGCAGTGCCCATTACACAGGAGAAAAGTGTGGTTGAAACTGAATTGGAGAAAAATGCCGAATCACCATCAGAGGAAGTGGGGGTTAGTAAGCGTGATGCTGACTCCTCTGTTCAGAATGAAGGTGAGAGTACTGGGACTGCTGATGCTGAGGTGGCAAGAGGCATTTCATTGGACACTTCACATACAGTGGATTCTGGAGGAGAAGCCAAGAATTCAAAGATGTCTATACAGGTTGATCTATCAGTGCAACATGCTTCTGATAATATTGCAGAGGGGATGTCCGTTATTGTTGAATCAGAGATTCCAGGTAGTGAAGAGGAGTCACTGCCTTCACAGGACATTATTAATACATCCTTAATGCAGGAGAGGGAAGATCAGGAAGAAGTACAGCAGTTAAATTCCTTGTCTCTGGGGAATGCTGATGCCACCTCTGGGGAATTGAAAGCTCAGAATGAGGCCTTAGAAGAATATAGCAAGAAACTGGAAGCAACAAACATTGAGCTCAGGGTCCTATATGAAGCTTTAGAAGAACAGAGGGGAAGCATTGAATCTAGGAACTGTGAGCTTTCGATTCTCTGCGAATCCTTACAACTAGAAGTCACTAATCTTAAAGTAGAAAACGTGGAAGTTGACAGAAAACTACATGTGTATGAGGCCACCTCTGGGGAGTTGAAGGAACAGAATGATGCCTTAGAAGAATATAGCAAGAAACTGGAAGCAACGAACATTGAGCTCAGGGTCCTATATGAAGCTTTAGAAGAACATAGGGGAAGGATTGAATCTAGGAACTGTGAGCTTTCGATTCTCTGTGAATCCTTACAACTAGAAGTCACTAATCTTAAAGTAGAAAACGTGGAAGTTGACAGAAAGCTACATGTGTATGAATCAAGAACTAGTAAATTGCAGAGTCAATTGCATGATCTACATCTAATTTCAAATGTTATGGTATCTCAGATCTCTGAGCAGTTGGAAAATTTTCACAAGGAAGCAGCTGAGAAAGTTTTGATACTTGAGCGCCGTTGGAATTCAACTATTGATCCGGTTCTTGAAGCAACTGGGAAGCTTGATGAATCTCTTGGTAGGGTCAACATGAATACAGCAGTCTCTCATGATTCTTTGGACAGAATTAGCTATTCTGTTGCTTCTGTTTATGATGCCATCAGTTTTATTCAAGATCTGAAGGACAAACTTGAAAGTTCTCAAACAGAACATGAAGCAGTCTTTACTTTATACAAAGAAGCGAATGAGAAATGTGATGATCTGCATGGAAATAATCAAATGGCCAGTGATTTGTTGCAGAAGTTGTATGGCGACCTTTCTAAACTTCTAACGGTCTTGCATGGGCCTACAGATGAAAGTGATATGTACTTAGAACCTGAGAAGCTTCCTGATCCTCTAGATTACAGTAATTATGAGATCATCATAGAACGTGTGGAATCTTTTTTGAGGGGGAGTCTGCAACTTGAATCTGTTAACAAGAAACTAAATTCAGAGTTGATGGCTAGCGCTGAAGAAGTTGAGGAACTGAAACAAAGATGCCTTGATTCTAATGTTCTGCAGAAGTTAATAGAAAATGTTGAAGGGGTGCTGAAAGTGGAACATGCTGAGTTTCAATTGGATAAAACGCCTGCTTCACGTCTTGAATCACTGGTGTCATGTCTTGTTCGGAAATGCGAGGAGGCTGACTTGCAGCTAAGCTTATCTAAGGAAGATTCTGGATCTAAGGTGGTGGAGCTGACTTTAATGCAGGAAGAAGTACAGCAGTTAAATGCCTTGTCTCTCCAGCATGAAAGTGAACTCATTGTTCTAAGGGAAAGTTTACATCAGGCGGAGGAAGCACTTCTTGTTGCTCGTTCTGAGATAGAAGGGAAAGTAAATGAACTTGAACAGTCAGAGCAACGGGTGTCTTCCCTTAGAGAGAAGCTTACCATTGCTGTCACCAAGGGGAAAGGTTTGATTGTGCAGCGAGATGGTCTGAAGCAGTCCCTTAACGAGAAATCTGTTGAACTGGAAAGATTCTCACAGGAACTGCAAATGAAAGATGCAAGGCTTCTTGAGATTGAAACAAAACTTAAGGCATATTCAGAGTCAGGTGAGCGGGTGGAAGCTCTGGAATCTGAGCTTTCATATATTCGCAATTCGGCTACTGCATTAAGAGAATCATTCCTTCTCAAAGATTCTGTCCTTCAGAGAATAGAAGAGATCTTGGAAGACCTTGATCTGCCAGAGCATTTTCATTCAAGAGATATTATTGAGAAGATTGATTGGCTGGCTAGGACAGCTACCAGTAACACTTTTCCTGTGACTGATTCAGATCAGAAGAGTTCTGCCGGTGGAGTTTCGTACTCTGATGGTGGTTTTGTTGTTATGGATTCCTGGAAAGATGATGTACAACCAAGTTCAAATTCAAGTGAGGATATCAAAAGAAAATATGAAGAACTTCAGAGTAAATTTTATGGGTTGGCTGAACAGAATGAAATGTTGGAACAATCTTTAATGGAAAGGAACAACATAGTACAGAGATGGGAGGAAATTTTGGACAGAATCGACATGCCATCACATCTGCGATCTGTGGAGCCAGAGGATAGGATCGATTGGTTAAGTAAAGCACTTTCAGAAGTGCAGGAAGACAATATGTCTCTCCAGCAGAAGGTTGTTAACCTTGAAAACCATTGTGTATCACTAACTGCTGATTTGGAAGACTCGCAAAGGAGAGTGTCTGACCTTGAGGCAGACCTTCAAACATTTGTCCATGAGAAAGATCATCTTTCTGAAAGATTGGAGACTCTGGTCAATGATCAGGAGAAGCTTTCAACAAAGGCAGTTGAATTTGAGCTTGAGAATGAAAAGCTGCAGAAGGAAGTCACTGATTTGCAAGAAAATGTAGCCAAGATGCATGGAAATGAGAATCAAATTCTCAGCATAGAAGCTGACTTAAGAAGATTACAGAGTTTGGTTACTGATGCCTTGGAGGTCTCTGGATCAAAGTATGAGTACTCCGGTGATAGTAGCATTGAGTGCTTGGAATGGTTACTGAATAAGCTTTTAGAGAGTTATGCAACTTTTTCCTCAGGAAAACCCATAGAAGCTGACTTAAGAAGATTACAGAGTTTGGTTACTGATGCCTTGGAGGTCTCTGGATCAAAGTATGAGTATTCGGGTGATAGTAGCATTGAGTGCTTGGAAGGGTTGCTGAATAAGCTTTTAGAGAGTTATGCAACTCTTTCCTCAGGAAAACCTGTGCATGGGGGTGCAGCTGAAGGTCTCCATACTGAATATGCTGATGCAACAGTTGTTGGATCGAGAAGCCTAAATAGACTTGATTCCCAGGAATCAGATATAGATGTTTTGAAGAAAGAGTTGGAGGATGTTCAACATGAACTTTTAGATGTGAAGGAGGAGAGGGATGGATATCTAGAGAAGCAACAGTCTATGGCTAGTGAATTTGAAGCATTACATAACAAGGTGAATGAGTTGCAAGGGCTGCTTAATCAAGAGGAGAAGAAGTCTGCTTCTGTTAGAGAGAAGTTAAATGTTGCAGTCAGAAAAGGGAAGTCTTTGGTACAGCAGCGTGACAGTCTGAAACAGAGTATTGATGAGGTCAACTCTGAGGTGGAACGTTTGAGATCAGAGATCAAGACGGGCCAAGTTAAAATTGCAGAGTATGAACAAAACTTCAGGGATTTGTCTACTTACCCTGGTAGGGTAGAAGCCTTAGAATCTGAGACATTGTTCTTGAGGAATTGTTTGAATGAAACTGAGCAGAATTTGCAGCAGAAAGCAAATACTTTGAGCATGATTGTAAATATCTTAGACAACATTGATGTAGGAGGCGATTTGAATTCTCGTGATCCAGTTGTGAAGTTGGAACAAATTGGGAAAATGTGCTTTGATTTACGAGCAGATGTAGCTTCTTCTGAGCAAGAGACTAGGAAATCCAAAAAAGCAGCAGAGCTACTCCTTGCAGAACTGAATGAGGTTCAAGAGAGGAATGACGGTCTCCAGGAAGAGCTAGCAAAATCTGCTGATGAAATTTCTATACTCTCCAAGGAAAGGGATCTTGCTGAGGCTGGCAAGCTTGAAGCTGTTTCAAGTCTTGAAAAGTTATCTACTGCTCACTCCGAGGAAAGAAACCAATTTTCTGAATTTGCAGGACTGAAATCTGGTGTAGATCAACTCAGGAAGGGTTTCCATGATATTAGCAATTCATTGGCTGGTCTTTTTTACAACGACTTGGAATTTTTGAAAAACTTGGAGTCTGGTATTGACTCATGTCTCAACTTGAATAGTGCTAATGTGGTTGATGTGCACCCCTTCACTGCAGCTGGTGGATTTCTGCTAGGCAAATCAGATAAGGATAACTCTATTTCAATTAATTCTTGGTCAGACCCCGAGGCGCATGGACATTTTGGTGACAGTTTTGCCATCGAAACCTTTACATACATAACACATTATGTGCAAGAGCTCATGACGGAGATTGGTGTGCTTAAAGAAAAATTAGATGAACACTCGATGTCTTTGCATGAAAAATCTAGCAGTGTATCCAGATTGGTGGCAATTGTTCGTGGAGAGATAAGTTCCAAAAATGAGTCGTTTGAAGCCTTGAGGAGAGACTTTTTGCAGATGGAAATGGTCAAAAAGGAAAAGGACAAGGAACTTCTTGTCTTGCATAGACATGCTGCCTTGCTTTTTGAAGCATGCACTAGTTCAGTTGTGGAAATAAATAGAAGAAAAGCTGAATTGTTGGGAAACAGTTGGGCTGTTGGAGATCTGGGAATGACATCAAAAACAGCAGAATTGCCTGCTTTCAGGGGAGAGGGTGAGCTGTACTCTGAGGAATCTGTTAGGTCTGTGGCAGACGGGCTTTTGTCGGCTGCTAGTGATTTTGCTACTCTGACAGCTGAAATAGTTGAAGGCAGCCAAAAGGAAATGAAGCTTACCATTTCATATTTGCAGAAAGAGCTTCAGGAGAAGGACGTTCAAAAGGAGAGGATTTTCATGGAGCTTGTAAGTCAAATCAAGGAGGCAGAAGCTACTGCAAGCAGCTATTCAGTGGACCTTGAATCTTCAAAAACCTTGGTGCATGATTTGGAGAAACAGTTGGAAGCGATGAAAGGTGAACGCAACGTACTTGAGCAGAGAGTAAAGGAGCTAGAAGATGGCCATGCCTCCTCTGACGAGTTACAACAGAGGGTCAGATCACTAACGGATGTGCTTGCTGCCAAAGACCATGAAATTGAGGAGCTAATGCAAGCACTTGATGAGGAGGAGGTACAGATGCAAGGTATCACCTTCAAGATCACAGAACTGGAAAAGATTGTTGAACAAAAAAACCTAGATTTAGAGAACCTTGAAGCTTCTCGTGGCAAGGTGATGAAAAAGCTCTTCGTCACTGTGAATAAGTTTGACGAGCTGCATCATCTATCTGCAAGCCTCCTTGCTGAAGTTGAAGAACTGCAGTCACAGTTGCAAGATCGGGATGCAGAGATTTCTTTCTTAAGGCAAGAGGTCACTAGGTGCACCAATGATGTTCTGGTTGCATCACAAGTCAGTAAGAAGGGAAATTCAGATGAGATCCACGAGTTATTAACATGGTTTGATATGAATGTTGCTCGATTTGGGGTGCGCAGTCAGTATCTTGAAGATAAGAACAACAGTGACATCGCTGAACAAATGGAAGTACTCAAGAAGACAGTTGATTCTATTTTATCAGAATTGGGGGATCTACGGGCTGCTGCTCAAAGCAAAGATATATTGTTGCAAGAAGAAAGGACCAAGGTAGAAGAATTAACACGCAAGGGTCAGACTCTTGAGAAGTGTTTGCGGGAGAAGGAATCACAATTAAATCTGCTTGAAGGTGTGGAAGACGGCCAGGCAACTAGCTTGACCTCGGAGATTCATGAAGTTGAGCCTGCGATAAACAAATGGGCAGCATCTGGTTCCTCCCTTGCATCGCAAGTCCGCAGTTTGCGCAAAGGCAATAGTGAGCAAGTTGCAATTGCCATAGATATGGATCCTGGGAGCACTAGTAGATTGGAAGATGAAGAAGATGATAAGGTTCATGGTTTCAAGTCACTCACTACATCAAGAATGGTTCCTAGATTTACAAGACCTCTGACTGACATGGTTGATGGCCTCTGGGTTACTTGTGATCGGACTTTAATGCGACAACCAATTTTGCGGCTTGGTATCATATTCTATTGGGCCTTTCTGCATACGCTTCTTGCTAGTCTTGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

2564

Amino Acids

285.05

Weight (kDa)

4.64

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 7079, 7424
Acc36I ACCTGC 3 cut(s) 36, 181, 1084
AccBSI CCGCTC 1 cut(s) 3550
AccI GTMKAC 1 cut(s) 5141
AciI CCGC 6 cut(s) 227, 3281, 3550, 7276, 7414, 7633
AclI AACGTT 1 cut(s) 5071
AcoI YGGCCR 4 cut(s) 40, 2733, 6613, 7321
AdeI CACNNNGTG 1 cut(s) 6969
AfeI AGCGCT 1 cut(s) 2959
AfiI CCNNNNNNNGG 9 cut(s) 293, 432, 1174, 1884, 2115, 4102, 4697, 5155, 5505
AflII CTTAAG 4 cut(s) 3524, 4387, 4546, 6949
AflIII ACRYGT 3 cut(s) 2095, 2326, 2881
AhdI GACNNNNNGTC 2 cut(s) 664, 4087
AhlI ACTAGT 4 cut(s) 362, 2345, 6155, 7478
AjiI CACGTC 1 cut(s) 3089
AjnI CCWGG 8 cut(s) 93, 1756, 3827, 4779, 5149, 5454, 7323, 7468
AjuI GAANNNNNNNTTGG 6 cut(s) 3841, 3873, 3917, 3949, 4796, 4828
Alw21I GWGCWC 6 cut(s) 1956, 2187, 5763, 5919, 6974, 7478
Alw44I GTGCAC 2 cut(s) 5759, 6970
AlwNI CAGNNNCTG 5 cut(s) 311, 356, 1421, 3481, 7388
Ama87I CYCGRG 2 cut(s) 1168, 5843
Aor51HI AGCGCT 1 cut(s) 2959
ApaLI GTGCAC 2 cut(s) 5759, 6970
ArsI GACNNNNNNTTYG 2 cut(s) 3618, 3650
AseI ATTAAT 4 cut(s) 732, 1209, 1797, 5826
Asp700I GAANNNNTTC 4 cut(s) 2427, 3291, 3891, 5639
AspLEI GCGC 6 cut(s) 634, 2469, 2960, 5851, 7080, 7425
AsuNHI GCTAGC 2 cut(s) 2954, 5464
AvaI CYCGRG 2 cut(s) 1168, 5843
AvaII GGWCC 6 cut(s) 857, 1445, 1960, 2191, 6508, 7224
AxyI CCTNAGG 2 cut(s) 4522, 4681
BaeGI GKGCMC 4 cut(s) 1040, 1461, 5763, 6974
BalI TGGCCA 2 cut(s) 2735, 6615
BamHI GGATCC 1 cut(s) 7465
BanII GRGCYC 3 cut(s) 1956, 2187, 5919
BauI CACGAG 3 cut(s) 5298, 6813, 7031
BbsI GAAGAC 6 cut(s) 3351, 3669, 4086, 4158, 7148, 7323
Bbv12I GWGCWC 6 cut(s) 1956, 2187, 5763, 5919, 6974, 7478
BbvCI CCTCAGC 4 cut(s) 534, 1450, 1599, 5517
BceAI ACGGC 4 cut(s) 3, 27, 2454, 7336
BcgI CGANNNNNNTGC 2 cut(s) 5953, 5987
BciT130I CCWGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
BciVI GTATCC 1 cut(s) 6004
BclI TGATCA 1 cut(s) 4249
BcuI ACTAGT 4 cut(s) 362, 2345, 6155, 7478
BfoI RGCGCY 2 cut(s) 2470, 2961
BfrI CTTAAG 4 cut(s) 3524, 4387, 4546, 6949
BfuAI ACCTGC 3 cut(s) 36, 181, 1084
BfuI GTATCC 1 cut(s) 6004
BglII AGATCT 4 cut(s) 2406, 2626, 3654, 6220
BlpI GCTNAGC 1 cut(s) 3146
BmcAI AGTACT 5 cut(s) 517, 994, 1582, 4448, 7134
Bme1390I CCNGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
Bme18I GGWCC 6 cut(s) 857, 1445, 1960, 2191, 6508, 7224
BmeRI GACNNNNNGTC 2 cut(s) 664, 4087
BmeT110I CYCGRG 2 cut(s) 1168, 5843
BmgBI CACGTC 1 cut(s) 3089
BmiI GGNNCC 8 cut(s) 859, 1447, 1961, 2192, 4029, 7393, 7467, 7548
BmrFI CCNGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
BmrI ACTGGG 4 cut(s) 528, 1005, 1593, 2517
BmtI GCTAGC 2 cut(s) 2958, 5468
BmuI ACTGGG 4 cut(s) 528, 1005, 1593, 2517
BoxI GACNNNNGTC 2 cut(s) 4241, 5724
BpiI GAAGAC 6 cut(s) 3351, 3669, 4086, 4158, 7148, 7323
BplI GAGNNNNNCTC 6 cut(s) 2096, 2128, 5042, 5074, 6266, 6298
BpmI CTGGAG 7 cut(s) 791, 1080, 1268, 1668, 3218, 4079, 5438
Bpu10I CCTNAGC 6 cut(s) 534, 1450, 1599, 1955, 2186, 5517
Bpu1102I GCTNAGC 1 cut(s) 3146
BpuEI CTTGAG 9 cut(s) 2483, 3527, 4199, 4310, 5209, 6076, 6605, 7121, 7283
Bsa29I ATCGAT 1 cut(s) 4044
BsaBI GATNNNNATC 4 cut(s) 2376, 3765, 4863, 7464
BsaI GGTCTC 5 cut(s) 235, 4432, 4591, 4721, 5456
BsaWI WCCGGW 2 cut(s) 2491, 4451
BsaXI ACNNNNNCTCC 6 cut(s) 4943, 4973, 6536, 6566, 7465, 7495
Bsc4I CCNNNNNNNGG 9 cut(s) 293, 432, 1174, 1884, 2115, 4102, 4697, 5155, 5505
Bse118I RCCGGY 1 cut(s) 3782
Bse21I CCTNAGG 2 cut(s) 4522, 4681
Bse3DI GCAATG 2 cut(s) 710, 3381
Bse8I GATNNNNATC 4 cut(s) 2376, 3765, 4863, 7464
BseBI CCWGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
BseCI ATCGAT 1 cut(s) 4044
BseJI GATNNNNATC 4 cut(s) 2376, 3765, 4863, 7464
BseLI CCNNNNNNNGG 9 cut(s) 293, 432, 1174, 1884, 2115, 4102, 4697, 5155, 5505
BseMI GCAATG 2 cut(s) 710, 3381
BseSI GKGCMC 4 cut(s) 1040, 1461, 5763, 6974
BsgI GTGCAG 3 cut(s) 3434, 4094, 4725
BshVI ATCGAT 1 cut(s) 4044
BsiHKAI GWGCWC 6 cut(s) 1956, 2187, 5763, 5919, 6974, 7478
BsiHKCI CYCGRG 2 cut(s) 1168, 5843
BsiSI CCGG 3 cut(s) 2492, 3783, 4452
BslFI GGGAC 7 cut(s) 366, 535, 843, 1012, 1431, 1600, 3421
BslI CCNNNNNNNGG 9 cut(s) 293, 432, 1174, 1884, 2115, 4102, 4697, 5155, 5505
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 7 cut(s) 366, 535, 843, 1012, 1431, 1600, 3421
BsmI GAATGC 1 cut(s) 1873
Bso31I GGTCTC 5 cut(s) 235, 4432, 4591, 4721, 5456
BsoBI CYCGRG 2 cut(s) 1168, 5843
Bsp1286I GDGCHC 8 cut(s) 1040, 1461, 1956, 2187, 5763, 5919, 6974, 7478
Bsp1407I TGTACA 1 cut(s) 3841
Bsp1720I GCTNAGC 1 cut(s) 3146
BspACI CCGC 6 cut(s) 227, 3281, 3550, 7276, 7414, 7633
BspDI ATCGAT 1 cut(s) 4044
BspHI TCATGA 3 cut(s) 2560, 5919, 7351
BspLI GGNNCC 8 cut(s) 859, 1447, 1961, 2192, 4029, 7393, 7467, 7548
BspMAI CTGCAG 7 cut(s) 178, 352, 1417, 3012, 4308, 5776, 6912
BspMI ACCTGC 3 cut(s) 36, 181, 1084
BspOI GCTAGC 2 cut(s) 2958, 5468
BspQI GCTCTTC 2 cut(s) 5454, 6842
BspTI CTTAAG 4 cut(s) 3524, 4387, 4546, 6949
BspTNI GGTCTC 5 cut(s) 235, 4432, 4591, 4721, 5456
BsrBI CCGCTC 1 cut(s) 3550
BsrDI GCAATG 2 cut(s) 710, 3381
BsrFI RCCGGY 1 cut(s) 3782
BsrGI TGTACA 1 cut(s) 3841
BssAI RCCGGY 1 cut(s) 3782
BssSI CACGAG 3 cut(s) 5298, 6813, 7031
BssT1I CCWWGG 7 cut(s) 833, 3393, 4419, 4578, 5499, 6528, 7227
Bst2BI CACGAG 3 cut(s) 5298, 6813, 7031
Bst2UI CCWGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
Bst6I CTCTTC 7 cut(s) 496, 973, 1761, 3645, 3767, 5454, 6842
BstAFI CTTAAG 4 cut(s) 3524, 4387, 4546, 6949
BstAPI GCANNNNNTGC 5 cut(s) 4470, 4629, 4936, 5221, 5474
BstAUI TGTACA 1 cut(s) 3841
BstENI CCTNNNNNAGG 1 cut(s) 291
BstH2I RGCGCY 2 cut(s) 2470, 2961
BstHHI GCGC 6 cut(s) 634, 2469, 2960, 5851, 7080, 7425
BstNI CCWGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
BstNSI RCATGY 8 cut(s) 1118, 1706, 2099, 2330, 3056, 4006, 6131, 6153
BstPAI GACNNNNGTC 2 cut(s) 4241, 5724
BstSCI CCNGG 8 cut(s) 93, 1756, 3827, 4779, 5149, 5454, 7323, 7468
BstSLI GKGCMC 4 cut(s) 1040, 1461, 5763, 6974
BstV2I GAAGAC 6 cut(s) 3351, 3669, 4086, 4158, 7148, 7323
BstXI CCANNNNNNTGG 2 cut(s) 6004, 7462
Bsu15I ATCGAT 1 cut(s) 4044
Bsu36I CCTNAGG 2 cut(s) 4522, 4681
BsuI GTATCC 1 cut(s) 6004
BsuTUI ATCGAT 1 cut(s) 4044
BtgZI GCGATG 3 cut(s) 6575, 7099, 7389
BtrI CACGTC 1 cut(s) 3089
BtsI GCAGTG 7 cut(s) 91, 396, 873, 1461, 1775, 5769, 5995
BveI ACCTGC 3 cut(s) 36, 181, 1084
CaiI CAGNNNCTG 5 cut(s) 311, 356, 1421, 3481, 7388
CciI TCATGA 3 cut(s) 2560, 5919, 7351
CfoI GCGC 6 cut(s) 634, 2469, 2960, 5851, 7080, 7425
Cfr10I RCCGGY 1 cut(s) 3782
ClaI ATCGAT 1 cut(s) 4044
DraI TTTAAA 1 cut(s) 1080
DraIII CACNNNGTG 1 cut(s) 6969
DriI GACNNNNNGTC 2 cut(s) 664, 4087
EaeI YGGCCR 4 cut(s) 40, 2733, 6613, 7321
Eam1104I CTCTTC 7 cut(s) 496, 973, 1761, 3645, 3767, 5454, 6842
Eam1105I GACNNNNNGTC 2 cut(s) 664, 4087
EarI CTCTTC 7 cut(s) 496, 973, 1761, 3645, 3767, 5454, 6842
EciI GGCGGA 1 cut(s) 3296
Ecl136II GAGCTC 3 cut(s) 1954, 2185, 5917
Eco130I CCWWGG 7 cut(s) 833, 3393, 4419, 4578, 5499, 6528, 7227
Eco147I AGGCCT 1 cut(s) 1910
Eco24I GRGCYC 3 cut(s) 1956, 2187, 5919
Eco31I GGTCTC 5 cut(s) 235, 4432, 4591, 4721, 5456
Eco32I GATATC 2 cut(s) 3871, 4865
Eco47I GGWCC 6 cut(s) 857, 1445, 1960, 2191, 6508, 7224
Eco47III AGCGCT 1 cut(s) 2959
Eco53kI GAGCTC 3 cut(s) 1954, 2185, 5917
Eco81I CCTNAGG 2 cut(s) 4522, 4681
Eco88I CYCGRG 2 cut(s) 1168, 5843
EcoICRI GAGCTC 3 cut(s) 1954, 2185, 5917
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoO109I RGGNCCY 2 cut(s) 1960, 2191
EcoRI GAATTC 6 cut(s) 343, 598, 1408, 1663, 2476, 5293
EcoRII CCWGG 8 cut(s) 93, 1756, 3827, 4779, 5149, 5454, 7323, 7468
EcoRV GATATC 2 cut(s) 3871, 4865
EcoT14I CCWWGG 7 cut(s) 833, 3393, 4419, 4578, 5499, 6528, 7227
EcoT22I ATGCAT 1 cut(s) 4350
EcoT38I GRGCYC 3 cut(s) 1956, 2187, 5919
ErhI CCWWGG 7 cut(s) 833, 3393, 4419, 4578, 5499, 6528, 7227
Esp3I CGTCTC 1 cut(s) 264
FalI AAGNNNNNCTT 6 cut(s) 3279, 3311, 4203, 4235, 4923, 4955
FaqI GGGAC 7 cut(s) 366, 535, 843, 1012, 1431, 1600, 3421
FauI CCCGC 2 cut(s) 3543, 7269
FbaI TGATCA 1 cut(s) 4249
FblI GTMKAC 1 cut(s) 5141
FriOI GRGCYC 3 cut(s) 1956, 2187, 5919
FspI TGCGCA 2 cut(s) 7079, 7424
GlaI GCGC 6 cut(s) 633, 2468, 2959, 5850, 7079, 7424
GsuI CTGGAG 7 cut(s) 791, 1080, 1268, 1668, 3218, 4079, 5438
HaeII RGCGCY 2 cut(s) 2470, 2961
HapII CCGG 3 cut(s) 2492, 3783, 4452
HhaI GCGC 6 cut(s) 634, 2469, 2960, 5851, 7080, 7425
Hin6I GCGC 6 cut(s) 632, 2467, 2958, 5849, 7078, 7423
HinP1I GCGC 6 cut(s) 632, 2467, 2958, 5849, 7078, 7423
HincII GTYRAC 8 cut(s) 316, 1381, 2083, 2314, 2539, 2926, 4111, 5056
HindII GTYRAC 8 cut(s) 316, 1381, 2083, 2314, 2539, 2926, 4111, 5056
HpaI GTTAAC 2 cut(s) 2926, 4111
HpaII CCGG 3 cut(s) 2492, 3783, 4452
HpyCH4IV ACGT 7 cut(s) 2073, 2304, 2881, 3088, 5071, 6429, 6579
HpySE526I ACGT 7 cut(s) 2073, 2304, 2881, 3088, 5071, 6429, 6579
HspAI GCGC 6 cut(s) 632, 2467, 2958, 5849, 7078, 7423
Ksp22I TGATCA 1 cut(s) 4249
KspAI GTTAAC 2 cut(s) 2926, 4111
LguI GCTCTTC 2 cut(s) 5454, 6842
LmnI GCTCC 6 cut(s) 3184, 4027, 6454, 6601, 6694, 7473
MaeII ACGT 7 cut(s) 2073, 2304, 2881, 3088, 5071, 6429, 6579
MbiI CCGCTC 1 cut(s) 3550
MfeI CAATTG 4 cut(s) 2363, 3065, 6009, 7449
MhlI GDGCHC 8 cut(s) 1040, 1461, 1956, 2187, 5763, 5919, 6974, 7478
MlsI TGGCCA 2 cut(s) 2735, 6615
MluNI TGGCCA 2 cut(s) 2735, 6615
MmeI TCCRAC 8 cut(s) 2400, 2453, 3915, 4729, 4794, 5298, 6196, 6534
Mox20I TGGCCA 2 cut(s) 2735, 6615
Mph1103I ATGCAT 1 cut(s) 4350
MroXI GAANNNNTTC 4 cut(s) 2427, 3291, 3891, 5639
MscI TGGCCA 2 cut(s) 2735, 6615
MslI CAYNNNNRTG 9 cut(s) 1430, 2100, 2331, 3243, 4353, 4701, 5862, 6126, 7460
Msp20I TGGCCA 2 cut(s) 2735, 6615
MspA1I CMGCKG 4 cut(s) 2444, 4709, 5777, 6353
MspCI CTTAAG 4 cut(s) 3524, 4387, 4546, 6949
MspI CCGG 3 cut(s) 2492, 3783, 4452
MspR9I CCNGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
MunI CAATTG 4 cut(s) 2363, 3065, 6009, 7449
Mva1269I GAATGC 1 cut(s) 1873
MvaI CCWGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
NheI GCTAGC 2 cut(s) 2954, 5464
NlaIV GGNNCC 8 cut(s) 859, 1447, 1961, 2192, 4029, 7393, 7467, 7548
NmeAIII GCCGAG 2 cut(s) 365, 842
NsbI TGCGCA 2 cut(s) 7079, 7424
NsiI ATGCAT 1 cut(s) 4350
NspI RCATGY 8 cut(s) 1118, 1706, 2099, 2330, 3056, 4006, 6131, 6153
PaeI GCATGC 1 cut(s) 6153
PagI TCATGA 3 cut(s) 2560, 5919, 7351
PceI AGGCCT 1 cut(s) 1910
PciI ACATGT 2 cut(s) 2095, 2326
PciSI GCTCTTC 2 cut(s) 5454, 6842
PctI GAATGC 1 cut(s) 1873
PdmI GAANNNNTTC 4 cut(s) 2427, 3291, 3891, 5639
PfoI TCCNGGA 2 cut(s) 3827, 5454
PpuMI RGGWCCY 2 cut(s) 1960, 2191
PscI ACATGT 2 cut(s) 2095, 2326
PshAI GACNNNNGTC 2 cut(s) 4241, 5724
PshBI ATTAAT 4 cut(s) 732, 1209, 1797, 5826
Psp124BI GAGCTC 3 cut(s) 1956, 2187, 5919
Psp1406I AACGTT 1 cut(s) 5071
Psp5II RGGWCCY 2 cut(s) 1960, 2191
Psp6I CCWGG 8 cut(s) 93, 1756, 3827, 4779, 5149, 5454, 7323, 7468
PspGI CCWGG 8 cut(s) 93, 1756, 3827, 4779, 5149, 5454, 7323, 7468
PspN4I GGNNCC 8 cut(s) 859, 1447, 1961, 2192, 4029, 7393, 7467, 7548
PspPPI RGGWCCY 2 cut(s) 1960, 2191
PsrI GAACNNNNNNTAC 2 cut(s) 6564, 6596
PstI CTGCAG 7 cut(s) 178, 352, 1417, 3012, 4308, 5776, 6912
PstNI CAGNNNCTG 5 cut(s) 311, 356, 1421, 3481, 7388
PvuII CAGCTG 4 cut(s) 2444, 4709, 5777, 6353
RseI CAYNNNNRTG 9 cut(s) 1430, 2100, 2331, 3243, 4353, 4701, 5862, 6126, 7460
SacI GAGCTC 3 cut(s) 1956, 2187, 5919
SapI GCTCTTC 2 cut(s) 5454, 6842
ScaI AGTACT 5 cut(s) 517, 994, 1582, 4448, 7134
ScrFI CCNGG 8 cut(s) 95, 1758, 3829, 4781, 5151, 5456, 7325, 7470
SduI GDGCHC 8 cut(s) 1040, 1461, 1956, 2187, 5763, 5919, 6974, 7478
SinI GGWCC 6 cut(s) 857, 1445, 1960, 2191, 6508, 7224
SmiI ATTTAAAT 1 cut(s) 1080
SmiMI CAYNNNNRTG 9 cut(s) 1430, 2100, 2331, 3243, 4353, 4701, 5862, 6126, 7460
SpeI ACTAGT 4 cut(s) 362, 2345, 6155, 7478
SphI GCATGC 1 cut(s) 6153
SseBI AGGCCT 1 cut(s) 1910
SsiI CCGC 6 cut(s) 227, 3281, 3550, 7276, 7414, 7633
SspI AATATT 3 cut(s) 730, 1207, 1717
SstI GAGCTC 3 cut(s) 1956, 2187, 5919
StuI AGGCCT 1 cut(s) 1910
StyD4I CCNGG 8 cut(s) 93, 1756, 3827, 4779, 5149, 5454, 7323, 7468
StyI CCWWGG 7 cut(s) 833, 3393, 4419, 4578, 5499, 6528, 7227
SwaI ATTTAAAT 1 cut(s) 1080
TaiI ACGT 7 cut(s) 2076, 2307, 2884, 3091, 5074, 6432, 6582
TaqI TCGA 9 cut(s) 1125, 2021, 2252, 3999, 4044, 4754, 5880, 5963, 7066
TauI GCSGC 1 cut(s) 7636
TspGWI ACGGA 6 cut(s) 257, 288, 1135, 1723, 5939, 6674
Vha464I CTTAAG 4 cut(s) 3524, 4387, 4546, 6949
VneI GTGCAC 2 cut(s) 5759, 6970
VpaK11BI GGWCC 6 cut(s) 857, 1445, 1960, 2191, 6508, 7224
VspI ATTAAT 4 cut(s) 732, 1209, 1797, 5826
XagI CCTNNNNNAGG 1 cut(s) 291
XbaI TCTAGA 2 cut(s) 2848, 4867
XceI RCATGY 8 cut(s) 1118, 1706, 2099, 2330, 3056, 4006, 6131, 6153
XcmI CCANNNNNNNNNTGG 1 cut(s) 6982
XmiI GTMKAC 1 cut(s) 5141
XmnI GAANNNNTTC 4 cut(s) 2427, 3291, 3891, 5639
ZrmI AGTACT 5 cut(s) 517, 994, 1582, 4448, 7134
Zsp2I ATGCAT 1 cut(s) 4350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.