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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1451 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 922, 5573 |
| AatII | GACGTC | 1 cut(s) | 6807 |
| Acc16I | TGCGCA | 2 cut(s) | 5550, 7115 |
| Acc36I | ACCTGC | 3 cut(s) | 334, 1153, 2998 |
| AccB1I | GGYRCC | 1 cut(s) | 4412 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1844 |
| AccI | GTMKAC | 4 cut(s) | 1963, 2663, 3012, 4850 |
| AccII | CGCG | 1 cut(s) | 5061 |
| AciI | CCGC | 8 cut(s) | 221, 341, 1059, 4416, 5955, 6584, 6878, 7324 |
| AclI | AACGTT | 1 cut(s) | 4780 |
| AcoI | YGGCCR | 3 cut(s) | 2598, 3591, 7012 |
| AcyI | GRCGYC | 1 cut(s) | 6804 |
| AdeI | CACNNNGTG | 1 cut(s) | 6660 |
| AfaI | GTAC | 9 cut(s) | 445, 1716, 2684, 3078, 3711, 4725, 5202, 6825, 7249 |
| AfeI | AGCGCT | 1 cut(s) | 2824 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 820, 912, 1059, 1844, 4406, 4864, 5214, 6583 |
| AflII | CTTAAG | 4 cut(s) | 419, 1054, 4255, 6640 |
| AflIII | ACRYGT | 4 cut(s) | 265, 2224, 2746, 2890 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 2177, 6650 |
| AhlI | ACTAGT | 3 cut(s) | 2243, 3605, 5855 |
| AjnI | CCWGG | 7 cut(s) | 813, 1002, 3593, 3695, 4488, 5415, 7159 |
| Alw21I | GWGCWC | 5 cut(s) | 741, 2085, 5463, 5619, 7169 |
| Alw44I | GTGCAC | 1 cut(s) | 5459 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1939, 3349, 3467 |
| Aor51HI | AGCGCT | 1 cut(s) | 2824 |
| AoxI | GGCC | 8 cut(s) | 77, 2037, 2598, 3591, 6313, 7012, 7276, 7347 |
| ApaLI | GTGCAC | 1 cut(s) | 5459 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1553, 1585, 3486, 3518 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 522, 2325, 3159, 5351 |
| AspLEI | GCGC | 8 cut(s) | 2367, 2825, 3943, 5061, 5063, 5551, 6665, 7116 |
| AspS9I | GGNCC | 8 cut(s) | 323, 456, 2037, 2089, 6208, 6314, 6766, 7347 |
| AsuII | TTCGAA | 1 cut(s) | 2983 |
| AsuNHI | GCTAGC | 2 cut(s) | 2819, 5231 |
| AvaII | GGWCC | 5 cut(s) | 323, 456, 2089, 6208, 6766 |
| BaeGI | GKGCMC | 2 cut(s) | 826, 5463 |
| BalI | TGGCCA | 2 cut(s) | 2600, 3593 |
| BamHI | GGATCC | 2 cut(s) | 343, 7156 |
| BanI | GGYRCC | 1 cut(s) | 4412 |
| BanII | GRGCYC | 4 cut(s) | 741, 1613, 2085, 5619 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4459, 4491 |
| BauI | CACGAG | 3 cut(s) | 5007, 6504, 6722 |
| BbsI | GAAGAC | 6 cut(s) | 105, 3219, 3537, 4026, 6839, 7014 |
| Bbv12I | GWGCWC | 5 cut(s) | 741, 2085, 5463, 5619, 7169 |
| BbvCI | CCTCAGC | 1 cut(s) | 5226 |
| BceAI | ACGGC | 1 cut(s) | 7027 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1797, 1831, 7008, 7042 |
| BciT130I | CCWGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| BciVI | GTATCC | 3 cut(s) | 217, 1939, 5704 |
| BclI | TGATCA | 1 cut(s) | 4117 |
| BcuI | ACTAGT | 3 cut(s) | 2243, 3605, 5855 |
| BfmI | CTRYAG | 7 cut(s) | 1034, 1302, 1779, 2340, 3962, 4172, 5472 |
| BfoI | RGCGCY | 2 cut(s) | 2368, 2826 |
| BfrI | CTTAAG | 4 cut(s) | 419, 1054, 4255, 6640 |
| BfuAI | ACCTGC | 3 cut(s) | 334, 1153, 2998 |
| BfuI | GTATCC | 3 cut(s) | 217, 1939, 5704 |
| BglII | AGATCT | 4 cut(s) | 1383, 2491, 3522, 5920 |
| BlpI | GCTNAGC | 1 cut(s) | 1754 |
| BmcAI | AGTACT | 1 cut(s) | 6825 |
| Bme1390I | CCNGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| Bme18I | GGWCC | 5 cut(s) | 323, 456, 2089, 6208, 6766 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 2177, 6650 |
| BmgT120I | GGNCC | 8 cut(s) | 323, 456, 2037, 2089, 6208, 6314, 6766, 7347 |
| BmrFI | CCNGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| BmrI | ACTGGG | 1 cut(s) | 2072 |
| BmtI | GCTAGC | 2 cut(s) | 2823, 5235 |
| BmuI | ACTGGG | 1 cut(s) | 2072 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4109 |
| BpiI | GAAGAC | 6 cut(s) | 105, 3219, 3537, 4026, 6839, 7014 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 101, 133 |
| BpmI | CTGGAG | 1 cut(s) | 5438 |
| Bpu10I | CCTNAGC | 4 cut(s) | 12, 1785, 2084, 5226 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1754 |
| Bpu14I | TTCGAA | 1 cut(s) | 2983 |
| Bsa29I | ATCGAT | 1 cut(s) | 3912 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2274, 3633, 4572, 7155 |
| BsaHI | GRCGYC | 1 cut(s) | 6804 |
| BsaI | GGTCTC | 4 cut(s) | 896, 4300, 4430, 5165 |
| BsaWI | WCCGGW | 1 cut(s) | 2389 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1223, 1253, 4652, 4682, 6236, 6266 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 820, 912, 1059, 1844, 4406, 4864, 5214, 6583 |
| Bse118I | RCCGGY | 1 cut(s) | 3650 |
| Bse3DI | GCAATG | 3 cut(s) | 1748, 3249, 7089 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2274, 3633, 4572, 7155 |
| BseBI | CCWGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| BseCI | ATCGAT | 1 cut(s) | 3912 |
| BseGI | GGATG | 5 cut(s) | 28, 166, 937, 4573, 6628 |
| BseJI | GATNNNNATC | 4 cut(s) | 2274, 3633, 4572, 7155 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 820, 912, 1059, 1844, 4406, 4864, 5214, 6583 |
| BseMI | GCAATG | 3 cut(s) | 1748, 3249, 7089 |
| BsePI | GCGCGC | 1 cut(s) | 5059 |
| BseSI | GKGCMC | 2 cut(s) | 826, 5463 |
| BseYI | CCCAGC | 1 cut(s) | 1475 |
| BsgI | GTGCAG | 4 cut(s) | 174, 718, 3026, 3302 |
| Bsh1236I | CGCG | 1 cut(s) | 5061 |
| BshFI | GGCC | 8 cut(s) | 79, 2039, 2600, 3593, 6315, 7014, 7278, 7349 |
| BshNI | GGYRCC | 1 cut(s) | 4412 |
| BshVI | ATCGAT | 1 cut(s) | 3912 |
| BsiHKAI | GWGCWC | 5 cut(s) | 741, 2085, 5463, 5619, 7169 |
| BsiSI | CCGG | 2 cut(s) | 2390, 3651 |
| BslFI | GGGAC | 4 cut(s) | 469, 928, 3289, 6791 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 820, 912, 1059, 1844, 4406, 4864, 5214, 6583 |
| BsmFI | GGGAC | 4 cut(s) | 469, 928, 3289, 6791 |
| BsmI | GAATGC | 1 cut(s) | 1808 |
| BsnI | GGCC | 8 cut(s) | 79, 2039, 2600, 3593, 6315, 7014, 7278, 7349 |
| Bso31I | GGTCTC | 4 cut(s) | 896, 4300, 4430, 5165 |
| Bsp119I | TTCGAA | 1 cut(s) | 2983 |
| Bsp1286I | GDGCHC | 7 cut(s) | 741, 826, 1613, 2085, 5463, 5619, 7169 |
| Bsp1407I | TGTACA | 3 cut(s) | 1714, 3709, 7247 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1754 |
| BspACI | CCGC | 8 cut(s) | 221, 341, 1059, 4416, 5955, 6584, 6878, 7324 |
| BspANI | GGCC | 8 cut(s) | 79, 2039, 2600, 3593, 6315, 7014, 7278, 7349 |
| BspDI | ATCGAT | 1 cut(s) | 3912 |
| BspFNI | CGCG | 1 cut(s) | 5061 |
| BspHI | TCATGA | 5 cut(s) | 1249, 1504, 2434, 5619, 7042 |
| BspMAI | CTGCAG | 5 cut(s) | 1306, 2344, 3966, 4176, 5476 |
| BspMI | ACCTGC | 3 cut(s) | 334, 1153, 2998 |
| BspOI | GCTAGC | 2 cut(s) | 2823, 5235 |
| BspQI | GCTCTTC | 2 cut(s) | 678, 5163 |
| BspT104I | TTCGAA | 1 cut(s) | 2983 |
| BspT107I | GGYRCC | 1 cut(s) | 4412 |
| BspTI | CTTAAG | 4 cut(s) | 419, 1054, 4255, 6640 |
| BspTNI | GGTCTC | 4 cut(s) | 896, 4300, 4430, 5165 |
| BsrDI | GCAATG | 3 cut(s) | 1748, 3249, 7089 |
| BsrFI | RCCGGY | 1 cut(s) | 3650 |
| BsrGI | TGTACA | 3 cut(s) | 1714, 3709, 7247 |
| BssAI | RCCGGY | 1 cut(s) | 3650 |
| BssHII | GCGCGC | 1 cut(s) | 5059 |
| BssNI | GRCGYC | 1 cut(s) | 6804 |
| BssSI | CACGAG | 3 cut(s) | 5007, 6504, 6722 |
| BssT1I | CCWWGG | 7 cut(s) | 2040, 2857, 3261, 4137, 4287, 5208, 6228 |
| Bst2BI | CACGAG | 3 cut(s) | 5007, 6504, 6722 |
| Bst2UI | CCWGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| Bst6I | CTCTTC | 7 cut(s) | 205, 396, 636, 678, 3513, 3635, 5163 |
| BstACI | GRCGYC | 1 cut(s) | 6804 |
| BstAFI | CTTAAG | 4 cut(s) | 419, 1054, 4255, 6640 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 4338, 4645, 4930, 5183 |
| BstAUI | TGTACA | 3 cut(s) | 1714, 3709, 7247 |
| BstBI | TTCGAA | 1 cut(s) | 2983 |
| BstF5I | GGATG | 5 cut(s) | 28, 166, 937, 4573, 6628 |
| BstFNI | CGCG | 1 cut(s) | 5061 |
| BstH2I | RGCGCY | 2 cut(s) | 2368, 2826 |
| BstHHI | GCGC | 8 cut(s) | 2367, 2825, 3943, 5061, 5063, 5551, 6665, 7116 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 3155, 3599, 4338, 4645, 4930, 5069, 5183, 6112, 7376 |
| BstNI | CCWGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| BstNSI | RCATGY | 8 cut(s) | 269, 2228, 2750, 2894, 2921, 3623, 3874, 5853 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4109 |
| BstSCI | CCNGG | 7 cut(s) | 813, 1002, 3593, 3695, 4488, 5415, 7159 |
| BstSFI | CTRYAG | 7 cut(s) | 1034, 1302, 1779, 2340, 3962, 4172, 5472 |
| BstSLI | GKGCMC | 2 cut(s) | 826, 5463 |
| BstUI | CGCG | 1 cut(s) | 5061 |
| BstV2I | GAAGAC | 6 cut(s) | 105, 3219, 3537, 4026, 6839, 7014 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 5704, 7153 |
| Bsu15I | ATCGAT | 1 cut(s) | 3912 |
| BsuI | GTATCC | 3 cut(s) | 217, 1939, 5704 |
| BsuRI | GGCC | 8 cut(s) | 79, 2039, 2600, 3593, 6315, 7014, 7278, 7349 |
| BsuTUI | ATCGAT | 1 cut(s) | 3912 |
| BtgZI | GCGATG | 2 cut(s) | 2586, 6275 |
| BtsCI | GGATG | 5 cut(s) | 28, 166, 937, 4573, 6628 |
| BtsI | GCAGTG | 4 cut(s) | 162, 4005, 5469, 5695 |
| BveI | ACCTGC | 3 cut(s) | 334, 1153, 2998 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1939, 3349, 3467 |
| CciI | TCATGA | 5 cut(s) | 1249, 1504, 2434, 5619, 7042 |
| CfoI | GCGC | 8 cut(s) | 2367, 2825, 3943, 5061, 5063, 5551, 6665, 7116 |
| Cfr10I | RCCGGY | 1 cut(s) | 3650 |
| Cfr13I | GGNCC | 8 cut(s) | 323, 456, 2037, 2089, 6208, 6314, 6766, 7347 |
| ClaI | ATCGAT | 1 cut(s) | 3912 |
| CseI | GACGC | 1 cut(s) | 1571 |
| CsiI | ACCWGGT | 1 cut(s) | 1002 |
| Csp6I | GTAC | 9 cut(s) | 444, 1715, 2683, 3077, 3710, 4724, 5201, 6824, 7248 |
| CviQI | GTAC | 9 cut(s) | 444, 1715, 2683, 3077, 3710, 4724, 5201, 6824, 7248 |
| DraI | TTTAAA | 1 cut(s) | 4512 |
| DraIII | CACNNNGTG | 1 cut(s) | 6660 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 922, 5573 |
| DriI | GACNNNNNGTC | 2 cut(s) | 2177, 6650 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 922, 5573 |
| EaeI | YGGCCR | 3 cut(s) | 2598, 3591, 7012 |
| Eam1104I | CTCTTC | 7 cut(s) | 205, 396, 636, 678, 3513, 3635, 5163 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 2177, 6650 |
| EarI | CTCTTC | 7 cut(s) | 205, 396, 636, 678, 3513, 3635, 5163 |
| EciI | GGCGGA | 1 cut(s) | 236 |
| Ecl136II | GAGCTC | 3 cut(s) | 739, 2083, 5617 |
| Eco130I | CCWWGG | 7 cut(s) | 2040, 2857, 3261, 4137, 4287, 5208, 6228 |
| Eco147I | AGGCCT | 1 cut(s) | 79 |
| Eco24I | GRGCYC | 4 cut(s) | 741, 1613, 2085, 5619 |
| Eco31I | GGTCTC | 4 cut(s) | 896, 4300, 4430, 5165 |
| Eco32I | GATATC | 3 cut(s) | 233, 3739, 4574 |
| Eco47I | GGWCC | 5 cut(s) | 323, 456, 2089, 6208, 6766 |
| Eco47III | AGCGCT | 1 cut(s) | 2824 |
| Eco53kI | GAGCTC | 3 cut(s) | 739, 2083, 5617 |
| EcoICRI | GAGCTC | 3 cut(s) | 739, 2083, 5617 |
| EcoO109I | RGGNCCY | 3 cut(s) | 323, 2037, 2089 |
| EcoRI | GAATTC | 2 cut(s) | 2374, 5527 |
| EcoRII | CCWGG | 7 cut(s) | 813, 1002, 3593, 3695, 4488, 5415, 7159 |
| EcoRV | GATATC | 3 cut(s) | 233, 3739, 4574 |
| EcoT14I | CCWWGG | 7 cut(s) | 2040, 2857, 3261, 4137, 4287, 5208, 6228 |
| EcoT22I | ATGCAT | 1 cut(s) | 4218 |
| EcoT38I | GRGCYC | 4 cut(s) | 741, 1613, 2085, 5619 |
| ErhI | CCWWGG | 7 cut(s) | 2040, 2857, 3261, 4137, 4287, 5208, 6228 |
| FaqI | GGGAC | 4 cut(s) | 469, 928, 3289, 6791 |
| FauI | CCCGC | 2 cut(s) | 1052, 5962 |
| FauNDI | CATATG | 1 cut(s) | 951 |
| FbaI | TGATCA | 1 cut(s) | 4117 |
| FblI | GTMKAC | 4 cut(s) | 1963, 2663, 3012, 4850 |
| FokI | GGATG | 5 cut(s) | 35, 173, 944, 4580, 6635 |
| FriOI | GRGCYC | 4 cut(s) | 741, 1613, 2085, 5619 |
| FspAI | RTGCGCAY | 1 cut(s) | 5550 |
| FspI | TGCGCA | 2 cut(s) | 5550, 7115 |
| GlaI | GCGC | 8 cut(s) | 2366, 2824, 3942, 5060, 5062, 5550, 6664, 7115 |
| GsaI | CCCAGC | 1 cut(s) | 1479 |
| GsuI | CTGGAG | 1 cut(s) | 5438 |
| HaeII | RGCGCY | 2 cut(s) | 2368, 2826 |
| HaeIII | GGCC | 8 cut(s) | 79, 2039, 2600, 3593, 6315, 7014, 7278, 7349 |
| HapII | CCGG | 2 cut(s) | 2390, 3651 |
| HgaI | GACGC | 1 cut(s) | 1571 |
| HhaI | GCGC | 8 cut(s) | 2367, 2825, 3943, 5061, 5063, 5551, 6665, 7116 |
| Hin1I | GRCGYC | 1 cut(s) | 6804 |
| Hin6I | GCGC | 8 cut(s) | 2365, 2823, 3941, 5059, 5061, 5549, 6663, 7114 |
| HinP1I | GCGC | 8 cut(s) | 2365, 2823, 3941, 5059, 5061, 5549, 6663, 7114 |
| HincII | GTYRAC | 5 cut(s) | 849, 1336, 2791, 3783, 3979 |
| HindII | GTYRAC | 5 cut(s) | 849, 1336, 2791, 3783, 3979 |
| HpaI | GTTAAC | 2 cut(s) | 2791, 3979 |
| HpaII | CCGG | 2 cut(s) | 2390, 3651 |
| HpyCH4IV | ACGT | 6 cut(s) | 1309, 2202, 4780, 6129, 6274, 6804 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 3155, 3599, 4338, 4645, 4930, 5069, 5183, 6112, 7376 |
| HpySE526I | ACGT | 6 cut(s) | 1309, 2202, 4780, 6129, 6274, 6804 |
| Hsp92I | GRCGYC | 1 cut(s) | 6804 |
| HspAI | GCGC | 8 cut(s) | 2365, 2823, 3941, 5059, 5061, 5549, 6663, 7114 |
| Ksp22I | TGATCA | 1 cut(s) | 4117 |
| KspAI | GTTAAC | 2 cut(s) | 2791, 3979 |
| LguI | GCTCTTC | 2 cut(s) | 678, 5163 |
| MabI | ACCWGGT | 1 cut(s) | 1002 |
| MaeII | ACGT | 6 cut(s) | 1309, 2202, 4780, 6129, 6274, 6804 |
| MfeI | CAATTG | 5 cut(s) | 147, 795, 2249, 5709, 7140 |
| MhlI | GDGCHC | 7 cut(s) | 741, 826, 1613, 2085, 5463, 5619, 7169 |
| MlsI | TGGCCA | 2 cut(s) | 2600, 3593 |
| MluNI | TGGCCA | 2 cut(s) | 2600, 3593 |
| MmeI | TCCRAC | 5 cut(s) | 2298, 3783, 4503, 5896, 6234 |
| Mox20I | TGGCCA | 2 cut(s) | 2600, 3593 |
| Mph1103I | ATGCAT | 1 cut(s) | 4218 |
| MroXI | GAANNNNTTC | 4 cut(s) | 522, 2325, 3159, 5351 |
| MscI | TGGCCA | 2 cut(s) | 2600, 3593 |
| Msp20I | TGGCCA | 2 cut(s) | 2600, 3593 |
| MspA1I | CMGCKG | 6 cut(s) | 179, 1517, 4418, 5477, 5864, 6053 |
| MspCI | CTTAAG | 4 cut(s) | 419, 1054, 4255, 6640 |
| MspI | CCGG | 2 cut(s) | 2390, 3651 |
| MspR9I | CCNGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| MunI | CAATTG | 5 cut(s) | 147, 795, 2249, 5709, 7140 |
| Mva1269I | GAATGC | 1 cut(s) | 1808 |
| MvaI | CCWGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| MvnI | CGCG | 1 cut(s) | 5061 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 3155, 3599, 4338, 4645, 4930, 5069, 5183, 6112, 7376 |
| NdeI | CATATG | 1 cut(s) | 951 |
| NheI | GCTAGC | 2 cut(s) | 2819, 5231 |
| NsbI | TGCGCA | 2 cut(s) | 5550, 7115 |
| NsiI | ATGCAT | 1 cut(s) | 4218 |
| NspI | RCATGY | 8 cut(s) | 269, 2228, 2750, 2894, 2921, 3623, 3874, 5853 |
| NspV | TTCGAA | 1 cut(s) | 2983 |
| PaeI | GCATGC | 1 cut(s) | 5853 |
| PagI | TCATGA | 5 cut(s) | 1249, 1504, 2434, 5619, 7042 |
| PauI | GCGCGC | 1 cut(s) | 5059 |
| PceI | AGGCCT | 1 cut(s) | 79 |
| PciI | ACATGT | 4 cut(s) | 265, 2224, 2746, 2890 |
| PciSI | GCTCTTC | 2 cut(s) | 678, 5163 |
| PctI | GAATGC | 1 cut(s) | 1808 |
| PdmI | GAANNNNTTC | 4 cut(s) | 522, 2325, 3159, 5351 |
| PflFI | GACNNNGTC | 1 cut(s) | 7268 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1844 |
| PfoI | TCCNGGA | 1 cut(s) | 3695 |
| PpuMI | RGGWCCY | 2 cut(s) | 323, 2089 |
| PscI | ACATGT | 4 cut(s) | 265, 2224, 2746, 2890 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4109 |
| PsiI | TTATAA | 1 cut(s) | 1451 |
| Psp124BI | GAGCTC | 3 cut(s) | 741, 2085, 5619 |
| Psp1406I | AACGTT | 1 cut(s) | 4780 |
| Psp5II | RGGWCCY | 2 cut(s) | 323, 2089 |
| Psp6I | CCWGG | 7 cut(s) | 813, 1002, 3593, 3695, 4488, 5415, 7159 |
| PspFI | CCCAGC | 1 cut(s) | 1475 |
| PspGI | CCWGG | 7 cut(s) | 813, 1002, 3593, 3695, 4488, 5415, 7159 |
| PspPI | GGNCC | 8 cut(s) | 323, 456, 2037, 2089, 6208, 6314, 6766, 7347 |
| PspPPI | RGGWCCY | 2 cut(s) | 323, 2089 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 198, 230 |
| PstI | CTGCAG | 5 cut(s) | 1306, 2344, 3966, 4176, 5476 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1939, 3349, 3467 |
| PsyI | GACNNNGTC | 1 cut(s) | 7268 |
| PteI | GCGCGC | 1 cut(s) | 5059 |
| PvuII | CAGCTG | 5 cut(s) | 179, 1517, 5477, 5864, 6053 |
| RsaI | GTAC | 9 cut(s) | 445, 1716, 2684, 3078, 3711, 4725, 5202, 6825, 7249 |
| RsaNI | GTAC | 9 cut(s) | 444, 1715, 2683, 3077, 3710, 4724, 5201, 6824, 7248 |
| SacI | GAGCTC | 3 cut(s) | 741, 2085, 5619 |
| SapI | GCTCTTC | 2 cut(s) | 678, 5163 |
| Sau96I | GGNCC | 8 cut(s) | 323, 456, 2037, 2089, 6208, 6314, 6766, 7347 |
| ScaI | AGTACT | 1 cut(s) | 6825 |
| ScrFI | CCNGG | 7 cut(s) | 815, 1004, 3595, 3697, 4490, 5417, 7161 |
| SduI | GDGCHC | 7 cut(s) | 741, 826, 1613, 2085, 5463, 5619, 7169 |
| SexAI | ACCWGGT | 1 cut(s) | 1002 |
| SfcI | CTRYAG | 7 cut(s) | 1034, 1302, 1779, 2340, 3962, 4172, 5472 |
| SfuI | TTCGAA | 1 cut(s) | 2983 |
| SinI | GGWCC | 5 cut(s) | 323, 456, 2089, 6208, 6766 |
| SpeI | ACTAGT | 3 cut(s) | 2243, 3605, 5855 |
| SphI | GCATGC | 1 cut(s) | 5853 |
| SseBI | AGGCCT | 1 cut(s) | 79 |
| SsiI | CCGC | 8 cut(s) | 221, 341, 1059, 4416, 5955, 6584, 6878, 7324 |
| SspI | AATATT | 2 cut(s) | 2051, 6751 |
| SstI | GAGCTC | 3 cut(s) | 741, 2085, 5619 |
| StuI | AGGCCT | 1 cut(s) | 79 |
| StyD4I | CCNGG | 7 cut(s) | 813, 1002, 3593, 3695, 4488, 5415, 7159 |
| StyI | CCWWGG | 7 cut(s) | 2040, 2857, 3261, 4137, 4287, 5208, 6228 |
| TaiI | ACGT | 6 cut(s) | 1312, 2205, 4783, 6132, 6277, 6807 |
| TaqI | TCGA | 8 cut(s) | 1812, 1817, 2983, 3867, 3912, 4776, 7028, 7272 |
| TatI | WGTACW | 8 cut(s) | 443, 1714, 2682, 3076, 3709, 5200, 6823, 7247 |
| TauI | GCSGC | 3 cut(s) | 4418, 6881, 7327 |
| TspGWI | ACGGA | 3 cut(s) | 398, 5639, 7094 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7268 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1844 |
| Vha464I | CTTAAG | 4 cut(s) | 419, 1054, 4255, 6640 |
| VneI | GTGCAC | 1 cut(s) | 5459 |
| VpaK11BI | GGWCC | 5 cut(s) | 323, 456, 2089, 6208, 6766 |
| XbaI | TCTAGA | 4 cut(s) | 788, 2713, 4576, 5332 |
| XceI | RCATGY | 8 cut(s) | 269, 2228, 2750, 2894, 2921, 3623, 3874, 5853 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 6673 |
| XmiI | GTMKAC | 4 cut(s) | 1963, 2663, 3012, 4850 |
| XmnI | GAANNNNTTC | 4 cut(s) | 522, 2325, 3159, 5351 |
| ZraI | GACGTC | 1 cut(s) | 6805 |
| ZrmI | AGTACT | 1 cut(s) | 6825 |
| Zsp2I | ATGCAT | 1 cut(s) | 4218 |