No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CCDC39 | PF24161 | 514 - 815 | 2.8e-06 | Coiled-coil domain-containing protein 39 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 6644 |
| AatII | GACGTC | 2 cut(s) | 116, 5099 |
| Acc16I | TGCGCA | 2 cut(s) | 6890, 8198 |
| Acc36I | ACCTGC | 4 cut(s) | 1057, 2035, 2182, 4060 |
| AccB1I | GGYRCC | 1 cut(s) | 181 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 5465, 6451 |
| AccBSI | CCGCTC | 1 cut(s) | 2323 |
| AccII | CGCG | 2 cut(s) | 7596, 8017 |
| AcoI | YGGCCR | 5 cut(s) | 3660, 4842, 6622, 7150, 8095 |
| AcuI | CTGAAG | 9 cut(s) | 216, 546, 1563, 2424, 4550, 5517, 6114, 7181, 7281 |
| AcyI | GRCGYC | 3 cut(s) | 113, 1190, 5096 |
| AdeI | CACNNNGTG | 1 cut(s) | 7749 |
| AfaI | GTAC | 5 cut(s) | 22, 436, 4770, 5485, 8436 |
| AflII | CTTAAG | 3 cut(s) | 1915, 3199, 7729 |
| AflIII | ACRYGT | 4 cut(s) | 487, 1342, 2707, 7072 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1729 |
| AhlI | ACTAGT | 1 cut(s) | 6419 |
| AjiI | CACGTC | 1 cut(s) | 2708 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 1596, 1628, 2018, 2050, 4768, 4800, 7556, 7588 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1915, 1947 |
| Alw21I | GWGCWC | 2 cut(s) | 2856, 7754 |
| Alw44I | GTGCAC | 2 cut(s) | 2852, 7750 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 281, 1004, 4469, 5332, 5729, 6284, 8162 |
| Ama87I | CYCGRG | 2 cut(s) | 2252, 7845 |
| AoxI | GGCC | 9 cut(s) | 1104, 1145, 3150, 3660, 4842, 6622, 7150, 8095, 8359 |
| ApaI | GGGCCC | 1 cut(s) | 1108 |
| ApaLI | GTGCAC | 2 cut(s) | 2852, 7750 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1309, 1341, 4545, 4577, 6587, 6619 |
| AseI | ATTAAT | 3 cut(s) | 288, 627, 3276 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 469, 1383, 2074, 3357, 3762, 3963, 4092, 4218 |
| AspLEI | GCGC | 4 cut(s) | 6891, 8019, 8199, 8446 |
| AspS9I | GGNCC | 6 cut(s) | 1104, 1105, 3150, 4947, 7474, 8166 |
| AsuC2I | CCSGG | 3 cut(s) | 262, 1271, 8099 |
| AsuNHI | GCTAGC | 4 cut(s) | 508, 6226, 6752, 7009 |
| AvaI | CYCGRG | 2 cut(s) | 2252, 7845 |
| AvaII | GGWCC | 3 cut(s) | 4947, 7474, 8166 |
| AxyI | CCTNAGG | 2 cut(s) | 1020, 4959 |
| BaeGI | GKGCMC | 5 cut(s) | 446, 1108, 2856, 6531, 7754 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4056, 4089 |
| BalI | TGGCCA | 3 cut(s) | 3662, 6624, 7152 |
| BamHI | GGATCC | 1 cut(s) | 5353 |
| BanI | GGYRCC | 1 cut(s) | 181 |
| BanII | GRGCYC | 2 cut(s) | 1108, 8386 |
| BauI | CACGAG | 4 cut(s) | 213, 1838, 4153, 6559 |
| BbsI | GAAGAC | 6 cut(s) | 3075, 4278, 4596, 5085, 5118, 5690 |
| Bbv12I | GWGCWC | 2 cut(s) | 2856, 7754 |
| BbvCI | CCTCAGC | 2 cut(s) | 453, 7674 |
| BceAI | ACGGC | 6 cut(s) | 3, 1203, 1635, 1703, 8078, 8423 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1644, 1678 |
| BciVI | GTATCC | 1 cut(s) | 7966 |
| BclI | TGATCA | 3 cut(s) | 577, 3343, 7879 |
| BcnI | CCSGG | 3 cut(s) | 262, 1271, 8099 |
| BcuI | ACTAGT | 1 cut(s) | 6419 |
| BfmI | CTRYAG | 7 cut(s) | 174, 273, 1884, 1895, 2004, 3726, 5930 |
| BfrI | CTTAAG | 3 cut(s) | 1915, 3199, 7729 |
| BfuAI | ACCTGC | 4 cut(s) | 1057, 2035, 2182, 4060 |
| BfuI | GTATCC | 1 cut(s) | 7966 |
| BglII | AGATCT | 5 cut(s) | 913, 1031, 3336, 3553, 5840 |
| BlpI | GCTNAGC | 2 cut(s) | 1253, 4304 |
| BmcAI | AGTACT | 1 cut(s) | 436 |
| Bme18I | GGWCC | 3 cut(s) | 4947, 7474, 8166 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1729 |
| BmeT110I | CYCGRG | 2 cut(s) | 2252, 7845 |
| BmgBI | CACGTC | 1 cut(s) | 2708 |
| BmgT120I | GGNCC | 6 cut(s) | 1104, 1105, 3150, 4947, 7474, 8166 |
| BmiI | GGNNCC | 9 cut(s) | 183, 312, 1105, 1106, 2593, 4956, 5355, 6487, 8167 |
| BmrI | ACTGGG | 2 cut(s) | 447, 8161 |
| BmtI | GCTAGC | 4 cut(s) | 512, 6230, 6756, 7013 |
| BmuI | ACTGGG | 2 cut(s) | 447, 8161 |
| BoxI | GACNNNNGTC | 1 cut(s) | 6376 |
| BpiI | GAAGAC | 6 cut(s) | 3075, 4278, 4596, 5085, 5118, 5690 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4338, 4370 |
| Bpu10I | CCTNAGC | 2 cut(s) | 453, 7674 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1253, 4304 |
| BpuMI | CCSGG | 3 cut(s) | 262, 1271, 8099 |
| Bsa29I | ATCGAT | 1 cut(s) | 4641 |
| BsaBI | GATNNNNATC | 6 cut(s) | 225, 576, 1122, 1830, 3306, 4692 |
| BsaHI | GRCGYC | 3 cut(s) | 113, 1190, 5096 |
| BsaI | GGTCTC | 2 cut(s) | 4358, 6218 |
| BsaJI | CCNNGG | 9 cut(s) | 261, 303, 636, 4320, 4950, 5912, 6261, 7594, 8098 |
| BsaWI | WCCGGW | 1 cut(s) | 3421 |
| Bse118I | RCCGGY | 2 cut(s) | 1062, 2905 |
| Bse21I | CCTNAGG | 2 cut(s) | 1020, 4959 |
| Bse3DI | GCAATG | 4 cut(s) | 4308, 5345, 5508, 6553 |
| Bse8I | GATNNNNATC | 6 cut(s) | 225, 576, 1122, 1830, 3306, 4692 |
| BseCI | ATCGAT | 1 cut(s) | 4641 |
| BseDI | CCNNGG | 9 cut(s) | 261, 303, 636, 4320, 4950, 5912, 6261, 7594, 8098 |
| BseJI | GATNNNNATC | 6 cut(s) | 225, 576, 1122, 1830, 3306, 4692 |
| BseMI | GCAATG | 4 cut(s) | 4308, 5345, 5508, 6553 |
| BseSI | GKGCMC | 5 cut(s) | 446, 1108, 2856, 6531, 7754 |
| BseYI | CCCAGC | 1 cut(s) | 8162 |
| BsgI | GTGCAG | 5 cut(s) | 662, 1579, 3659, 5021, 7526 |
| Bsh1236I | CGCG | 2 cut(s) | 7596, 8017 |
| BshFI | GGCC | 9 cut(s) | 1106, 1147, 3152, 3662, 4844, 6624, 7152, 8097, 8361 |
| BshNI | GGYRCC | 1 cut(s) | 181 |
| BshVI | ATCGAT | 1 cut(s) | 4641 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2856, 7754 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2252, 7845 |
| BsiSI | CCGG | 6 cut(s) | 261, 1063, 1270, 2906, 3422, 8098 |
| BslFI | GGGAC | 3 cut(s) | 1330, 2718, 8179 |
| BsmBI | CGTCTC | 1 cut(s) | 1197 |
| BsmFI | GGGAC | 3 cut(s) | 1330, 2718, 8179 |
| BsnI | GGCC | 9 cut(s) | 1106, 1147, 3152, 3662, 4844, 6624, 7152, 8097, 8361 |
| Bso31I | GGTCTC | 2 cut(s) | 4358, 6218 |
| BsoBI | CYCGRG | 2 cut(s) | 2252, 7845 |
| Bsp120I | GGGCCC | 1 cut(s) | 1104 |
| Bsp1286I | GDGCHC | 6 cut(s) | 446, 1108, 2856, 6531, 7754, 8386 |
| Bsp1407I | TGTACA | 1 cut(s) | 4768 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1253, 4304 |
| Bsp19I | CCATGG | 1 cut(s) | 4950 |
| BspANI | GGCC | 9 cut(s) | 1106, 1147, 3152, 3662, 4844, 6624, 7152, 8097, 8361 |
| BspDI | ATCGAT | 1 cut(s) | 4641 |
| BspFNI | CGCG | 2 cut(s) | 7596, 8017 |
| BspHI | TCATGA | 3 cut(s) | 2545, 5179, 6409 |
| BspLI | GGNNCC | 9 cut(s) | 183, 312, 1105, 1106, 2593, 4956, 5355, 6487, 8167 |
| BspMI | ACCTGC | 4 cut(s) | 1057, 2035, 2182, 4060 |
| BspOI | GCTAGC | 4 cut(s) | 512, 6230, 6756, 7013 |
| BspQI | GCTCTTC | 2 cut(s) | 1539, 6216 |
| BspT107I | GGYRCC | 1 cut(s) | 181 |
| BspTI | CTTAAG | 3 cut(s) | 1915, 3199, 7729 |
| BspTNI | GGTCTC | 2 cut(s) | 4358, 6218 |
| BsrBI | CCGCTC | 1 cut(s) | 2323 |
| BsrDI | GCAATG | 4 cut(s) | 4308, 5345, 5508, 6553 |
| BsrFI | RCCGGY | 2 cut(s) | 1062, 2905 |
| BsrGI | TGTACA | 1 cut(s) | 4768 |
| BssAI | RCCGGY | 2 cut(s) | 1062, 2905 |
| BssECI | CCNNGG | 9 cut(s) | 261, 303, 636, 4320, 4950, 5912, 6261, 7594, 8098 |
| BssNI | GRCGYC | 3 cut(s) | 113, 1190, 5096 |
| BssSI | CACGAG | 4 cut(s) | 213, 1838, 4153, 6559 |
| BssT1I | CCWWGG | 4 cut(s) | 636, 4320, 4950, 6261 |
| Bst2BI | CACGAG | 4 cut(s) | 213, 1838, 4153, 6559 |
| BstACI | GRCGYC | 3 cut(s) | 113, 1190, 5096 |
| BstAFI | CTTAAG | 3 cut(s) | 1915, 3199, 7729 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 1426, 5397, 5776, 6050, 6236, 6284, 6676 |
| BstAUI | TGTACA | 1 cut(s) | 4768 |
| BstDSI | CCRYGG | 2 cut(s) | 4950, 7594 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1112, 7673, 7729 |
| BstFNI | CGCG | 2 cut(s) | 7596, 8017 |
| BstHHI | GCGC | 4 cut(s) | 6891, 8019, 8199, 8446 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 6376 |
| BstSFI | CTRYAG | 7 cut(s) | 174, 273, 1884, 1895, 2004, 3726, 5930 |
| BstSLI | GKGCMC | 5 cut(s) | 446, 1108, 2856, 6531, 7754 |
| BstUI | CGCG | 2 cut(s) | 7596, 8017 |
| BstV2I | GAAGAC | 6 cut(s) | 3075, 4278, 4596, 5085, 5118, 5690 |
| BstX2I | RGATCY | 9 cut(s) | 913, 1031, 3336, 3553, 5353, 5840, 6271, 7806, 7945 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 424, 4349, 8236 |
| BstYI | RGATCY | 9 cut(s) | 913, 1031, 3336, 3553, 5353, 5840, 6271, 7806, 7945 |
| Bsu15I | ATCGAT | 1 cut(s) | 4641 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1020, 4959 |
| BsuI | GTATCC | 1 cut(s) | 7966 |
| BsuRI | GGCC | 9 cut(s) | 1106, 1147, 3152, 3662, 4844, 6624, 7152, 8097, 8361 |
| BsuTUI | ATCGAT | 1 cut(s) | 4641 |
| BtgI | CCRYGG | 2 cut(s) | 4950, 7594 |
| BtgZI | GCGATG | 1 cut(s) | 5043 |
| BtrI | CACGTC | 1 cut(s) | 2708 |
| BtsI | GCAGTG | 4 cut(s) | 94, 2635, 6511, 8257 |
| BveI | ACCTGC | 4 cut(s) | 1057, 2035, 2182, 4060 |
| CaiI | CAGNNNCTG | 7 cut(s) | 281, 1004, 4469, 5332, 5729, 6284, 8162 |
| CciI | TCATGA | 3 cut(s) | 2545, 5179, 6409 |
| CfoI | GCGC | 4 cut(s) | 6891, 8019, 8199, 8446 |
| Cfr10I | RCCGGY | 2 cut(s) | 1062, 2905 |
| Cfr13I | GGNCC | 6 cut(s) | 1104, 1105, 3150, 4947, 7474, 8166 |
| Cfr42I | CCGCGG | 1 cut(s) | 7597 |
| ClaI | ATCGAT | 1 cut(s) | 4641 |
| CseI | GACGC | 1 cut(s) | 1179 |
| Csp6I | GTAC | 5 cut(s) | 21, 435, 4769, 5484, 8435 |
| CviQI | GTAC | 5 cut(s) | 21, 435, 4769, 5484, 8435 |
| DraI | TTTAAA | 1 cut(s) | 2370 |
| DraIII | CACNNNGTG | 1 cut(s) | 7749 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1729 |
| EaeI | YGGCCR | 5 cut(s) | 3660, 4842, 6622, 7150, 8095 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1729 |
| EciI | GGCGGA | 1 cut(s) | 1104 |
| Eco130I | CCWWGG | 4 cut(s) | 636, 4320, 4950, 6261 |
| Eco147I | AGGCCT | 1 cut(s) | 1147 |
| Eco24I | GRGCYC | 2 cut(s) | 1108, 8386 |
| Eco31I | GGTCTC | 2 cut(s) | 4358, 6218 |
| Eco32I | GATATC | 2 cut(s) | 1408, 7722 |
| Eco47I | GGWCC | 3 cut(s) | 4947, 7474, 8166 |
| Eco57I | CTGAAG | 9 cut(s) | 216, 546, 1563, 2424, 4550, 5517, 6114, 7181, 7281 |
| Eco81I | CCTNAGG | 2 cut(s) | 1020, 4959 |
| Eco88I | CYCGRG | 2 cut(s) | 2252, 7845 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1112, 7673, 7729 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1104, 1105, 7474, 8166 |
| EcoRI | GAATTC | 1 cut(s) | 6595 |
| EcoRV | GATATC | 2 cut(s) | 1408, 7722 |
| EcoT14I | CCWWGG | 4 cut(s) | 636, 4320, 4950, 6261 |
| EcoT22I | ATGCAT | 3 cut(s) | 1309, 5347, 6621 |
| EcoT38I | GRGCYC | 2 cut(s) | 1108, 8386 |
| ErhI | CCWWGG | 4 cut(s) | 636, 4320, 4950, 6261 |
| Esp3I | CGTCTC | 1 cut(s) | 1197 |
| FaqI | GGGAC | 3 cut(s) | 1330, 2718, 8179 |
| FauI | CCCGC | 3 cut(s) | 5226, 7589, 7601 |
| FauNDI | CATATG | 1 cut(s) | 6843 |
| FbaI | TGATCA | 3 cut(s) | 577, 3343, 7879 |
| FriOI | GRGCYC | 2 cut(s) | 1108, 8386 |
| FspI | TGCGCA | 2 cut(s) | 6890, 8198 |
| GlaI | GCGC | 4 cut(s) | 6890, 8018, 8198, 8445 |
| GsaI | CCCAGC | 1 cut(s) | 8166 |
| HaeIII | GGCC | 9 cut(s) | 1106, 1147, 3152, 3662, 4844, 6624, 7152, 8097, 8361 |
| HapII | CCGG | 6 cut(s) | 261, 1063, 1270, 2906, 3422, 8098 |
| HgaI | GACGC | 1 cut(s) | 1179 |
| HhaI | GCGC | 4 cut(s) | 6891, 8019, 8199, 8446 |
| Hin1I | GRCGYC | 3 cut(s) | 113, 1190, 5096 |
| Hin6I | GCGC | 4 cut(s) | 6889, 8017, 8197, 8444 |
| HinP1I | GCGC | 4 cut(s) | 6889, 8017, 8197, 8444 |
| HincII | GTYRAC | 4 cut(s) | 406, 969, 5038, 7104 |
| HindII | GTYRAC | 4 cut(s) | 406, 969, 5038, 7104 |
| HpaI | GTTAAC | 2 cut(s) | 406, 5038 |
| HpaII | CCGG | 6 cut(s) | 261, 1063, 1270, 2906, 3422, 8098 |
| Hpy99I | CGWCG | 1 cut(s) | 6595 |
| HpyCH4IV | ACGT | 7 cut(s) | 113, 2707, 4201, 5096, 5590, 7072, 7209 |
| HpySE526I | ACGT | 7 cut(s) | 113, 2707, 4201, 5096, 5590, 7072, 7209 |
| Hsp92I | GRCGYC | 3 cut(s) | 113, 1190, 5096 |
| HspAI | GCGC | 4 cut(s) | 6889, 8017, 8197, 8444 |
| Ksp22I | TGATCA | 3 cut(s) | 577, 3343, 7879 |
| KspAI | GTTAAC | 2 cut(s) | 406, 5038 |
| KspI | CCGCGG | 1 cut(s) | 7597 |
| LguI | GCTCTTC | 2 cut(s) | 1539, 6216 |
| MaeII | ACGT | 7 cut(s) | 113, 2707, 4201, 5096, 5590, 7072, 7209 |
| MbiI | CCGCTC | 1 cut(s) | 2323 |
| MfeI | CAATTG | 6 cut(s) | 1287, 1656, 2916, 3281, 5771, 6777 |
| MflI | RGATCY | 9 cut(s) | 913, 1031, 3336, 3553, 5353, 5840, 6271, 7806, 7945 |
| MhlI | GDGCHC | 6 cut(s) | 446, 1108, 2856, 6531, 7754, 8386 |
| MlsI | TGGCCA | 3 cut(s) | 3662, 6624, 7152 |
| MluNI | TGGCCA | 3 cut(s) | 3662, 6624, 7152 |
| MmeI | TCCRAC | 6 cut(s) | 364, 2337, 3223, 6636, 6946, 8241 |
| Mox20I | TGGCCA | 3 cut(s) | 3662, 6624, 7152 |
| Mph1103I | ATGCAT | 3 cut(s) | 1309, 5347, 6621 |
| MroXI | GAANNNNTTC | 8 cut(s) | 469, 1383, 2074, 3357, 3762, 3963, 4092, 4218 |
| MscI | TGGCCA | 3 cut(s) | 3662, 6624, 7152 |
| MslI | CAYNNNNRTG | 4 cut(s) | 422, 2859, 3261, 8234 |
| Msp20I | TGGCCA | 3 cut(s) | 3662, 6624, 7152 |
| MspA1I | CMGCKG | 7 cut(s) | 38, 179, 1712, 3811, 5204, 7268, 7596 |
| MspCI | CTTAAG | 3 cut(s) | 1915, 3199, 7729 |
| MspI | CCGG | 6 cut(s) | 261, 1063, 1270, 2906, 3422, 8098 |
| MunI | CAATTG | 6 cut(s) | 1287, 1656, 2916, 3281, 5771, 6777 |
| MvnI | CGCG | 2 cut(s) | 7596, 8017 |
| NciI | CCSGG | 3 cut(s) | 262, 1271, 8099 |
| NcoI | CCATGG | 1 cut(s) | 4950 |
| NdeI | CATATG | 1 cut(s) | 6843 |
| NheI | GCTAGC | 4 cut(s) | 508, 6226, 6752, 7009 |
| NlaIV | GGNNCC | 9 cut(s) | 183, 312, 1105, 1106, 2593, 4956, 5355, 6487, 8167 |
| NmeAIII | GCCGAG | 1 cut(s) | 284 |
| NsbI | TGCGCA | 2 cut(s) | 6890, 8198 |
| NsiI | ATGCAT | 3 cut(s) | 1309, 5347, 6621 |
| PaeI | GCATGC | 4 cut(s) | 6116, 6921, 7259, 8444 |
| PaeR7I | CTCGAG | 1 cut(s) | 2252 |
| PagI | TCATGA | 3 cut(s) | 2545, 5179, 6409 |
| PceI | AGGCCT | 1 cut(s) | 1147 |
| PciI | ACATGT | 2 cut(s) | 487, 1342 |
| PciSI | GCTCTTC | 2 cut(s) | 1539, 6216 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 4842, 7280 |
| PdmI | GAANNNNTTC | 8 cut(s) | 469, 1383, 2074, 3357, 3762, 3963, 4092, 4218 |
| PflFI | GACNNNGTC | 3 cut(s) | 1189, 4559, 8351 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 5465, 6451 |
| PfoI | TCCNGGA | 5 cut(s) | 2973, 4754, 5356, 6216, 7526 |
| PpuMI | RGGWCCY | 2 cut(s) | 7474, 8166 |
| PscI | ACATGT | 2 cut(s) | 487, 1342 |
| PshAI | GACNNNNGTC | 1 cut(s) | 6376 |
| PshBI | ATTAAT | 3 cut(s) | 288, 627, 3276 |
| PsiI | TTATAA | 1 cut(s) | 6644 |
| Psp5II | RGGWCCY | 2 cut(s) | 7474, 8166 |
| PspFI | CCCAGC | 1 cut(s) | 8162 |
| PspN4I | GGNNCC | 9 cut(s) | 183, 312, 1105, 1106, 2593, 4956, 5355, 6487, 8167 |
| PspOMI | GGGCCC | 1 cut(s) | 1104 |
| PspPI | GGNCC | 6 cut(s) | 1104, 1105, 3150, 4947, 7474, 8166 |
| PspPPI | RGGWCCY | 2 cut(s) | 7474, 8166 |
| PspXI | VCTCGAGB | 1 cut(s) | 2252 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 6237, 6269 |
| PstNI | CAGNNNCTG | 7 cut(s) | 281, 1004, 4469, 5332, 5729, 6284, 8162 |
| PsuI | RGATCY | 9 cut(s) | 913, 1031, 3336, 3553, 5353, 5840, 6271, 7806, 7945 |
| PsyI | GACNNNGTC | 3 cut(s) | 1189, 4559, 8351 |
| PvuII | CAGCTG | 5 cut(s) | 38, 1712, 3811, 5204, 7268 |
| RsaI | GTAC | 5 cut(s) | 22, 436, 4770, 5485, 8436 |
| RsaNI | GTAC | 5 cut(s) | 21, 435, 4769, 5484, 8435 |
| RseI | CAYNNNNRTG | 4 cut(s) | 422, 2859, 3261, 8234 |
| SacII | CCGCGG | 1 cut(s) | 7597 |
| SapI | GCTCTTC | 2 cut(s) | 1539, 6216 |
| Sau96I | GGNCC | 6 cut(s) | 1104, 1105, 3150, 4947, 7474, 8166 |
| ScaI | AGTACT | 1 cut(s) | 436 |
| SduI | GDGCHC | 6 cut(s) | 446, 1108, 2856, 6531, 7754, 8386 |
| SfcI | CTRYAG | 7 cut(s) | 174, 273, 1884, 1895, 2004, 3726, 5930 |
| Sfr274I | CTCGAG | 1 cut(s) | 2252 |
| Sfr303I | CCGCGG | 1 cut(s) | 7597 |
| SgrBI | CCGCGG | 1 cut(s) | 7597 |
| SinI | GGWCC | 3 cut(s) | 4947, 7474, 8166 |
| SlaI | CTCGAG | 1 cut(s) | 2252 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 422, 2859, 3261, 8234 |
| SpeI | ACTAGT | 1 cut(s) | 6419 |
| SphI | GCATGC | 4 cut(s) | 6116, 6921, 7259, 8444 |
| SseBI | AGGCCT | 1 cut(s) | 1147 |
| SspI | AATATT | 6 cut(s) | 625, 5806, 6022, 6898, 7840, 7905 |
| StuI | AGGCCT | 1 cut(s) | 1147 |
| StyI | CCWWGG | 4 cut(s) | 636, 4320, 4950, 6261 |
| TaiI | ACGT | 7 cut(s) | 116, 2710, 4204, 5099, 5593, 7075, 7212 |
| TatI | WGTACW | 3 cut(s) | 434, 4768, 8434 |
| TauI | GCSGC | 1 cut(s) | 3374 |
| TspGWI | ACGGA | 2 cut(s) | 3575, 8161 |
| Tth111I | GACNNNGTC | 3 cut(s) | 1189, 4559, 8351 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 5465, 6451 |
| Vha464I | CTTAAG | 3 cut(s) | 1915, 3199, 7729 |
| VneI | GTGCAC | 2 cut(s) | 2852, 7750 |
| VpaK11BI | GGWCC | 3 cut(s) | 4947, 7474, 8166 |
| VspI | ATTAAT | 3 cut(s) | 288, 627, 3276 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1112, 7673, 7729 |
| XbaI | TCTAGA | 2 cut(s) | 3967, 7567 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 74, 1179 |
| XhoI | CTCGAG | 1 cut(s) | 2252 |
| XmnI | GAANNNNTTC | 8 cut(s) | 469, 1383, 2074, 3357, 3762, 3963, 4092, 4218 |
| ZraI | GACGTC | 2 cut(s) | 114, 5097 |
| ZrmI | AGTACT | 1 cut(s) | 436 |
| Zsp2I | ATGCAT | 3 cut(s) | 1309, 5347, 6621 |