FvH4_6g26670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001092
Physical Location & Seq
Reverse (-)
20357863 .. 20358451
589 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26670.t1

Sequence Viewer

Length: 429 bp
ATGTACAAGAATAAGAGTCACACCGATATGCTCGCTGCTGGCCGTAAAAAGCTTCAACAATATCGTCAGAGGAAGGATAAAGGCAGTGGAAGCCAGGGGAAGTCCACTAAAAAGCCTGGGAAGTCAGAGCAGAGTGAGGCTGTTGCTGATGGAGTCTCCACTGGAACTAAACCTACTGCATCGTCTCAGGTCTGTGACGTAGGAACCGAGTTTGTTGTAGGTTCTAATTCGGGAATCGTCAACATGTCGGGGTCAAATGCTGTAGAGAATTCTGCAGGATCTGACACTAGTGTAGCTGTTGTTGGTCCCTCAGCAATGCCCATTACACTGGAGAAAAGTGTGGTTGAAACTGAAGAGGAGAAAAATACGGAATCATTGTCAAAGGAAGTGGGGGTTAGCAACCCTGGGACTGCTGACTCTTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.6

Weight (kDa)

6.59

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 56, 347
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 3 cut(s) 93, 115, 403
AluBI AGCT 2 cut(s) 52, 296
AluI AGCT 2 cut(s) 52, 296
Alw26I GTCTC 2 cut(s) 160, 189
AlwI GGATC 1 cut(s) 286
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 3 cut(s) 95, 117, 405
BcoDI GTCTC 2 cut(s) 160, 189
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 261, 273
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 95, 117, 405
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 205, 307
BmrFI CCNGG 3 cut(s) 95, 117, 405
BmsI GCATC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 310
BsaJI CCNNGG 4 cut(s) 94, 116, 403, 404
Bse1I ACTGG 2 cut(s) 166, 333
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 3 cut(s) 95, 117, 405
BseDI CCNNGG 4 cut(s) 94, 116, 403, 404
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 200, 324
BseNI ACTGG 2 cut(s) 166, 333
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 42
BslFI GGGAC 2 cut(s) 291, 421
BsmAI GTCTC 2 cut(s) 160, 189
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 291, 421
BsnI GGCC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 278
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 199, 323
BspLI GGNNCC 2 cut(s) 205, 307
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 166, 333
BssECI CCNNGG 4 cut(s) 94, 116, 403, 404
BssMI GATC 1 cut(s) 278
Bst2UI CCWGG 3 cut(s) 95, 117, 405
Bst6I CTCTTC 2 cut(s) 348, 424
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 33, 40
BstDEI CTNAG 3 cut(s) 186, 310, 426
BstKTI GATC 1 cut(s) 281
BstMAI GTCTC 2 cut(s) 160, 189
BstMBI GATC 1 cut(s) 278
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 3 cut(s) 95, 117, 405
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 3 cut(s) 93, 115, 403
BstSFI CTRYAG 2 cut(s) 261, 273
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 3 cut(s) 91, 159, 326
Cac8I GCNNGC 2 cut(s) 33, 40
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 1 cut(s) 244
CviJI RGCY 6 cut(s) 42, 52, 93, 115, 140, 296
CviKI_1 RGCY 6 cut(s) 42, 52, 93, 115, 140, 296
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 186, 310, 426
DpnI GATC 1 cut(s) 280
DpnII GATC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 348, 424
EarI CTCTTC 2 cut(s) 348, 424
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 3 cut(s) 93, 115, 403
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 1 cut(s) 247
FaiI YATR 2 cut(s) 29, 245
FaqI GGGAC 2 cut(s) 291, 421
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 5 cut(s) 16, 153, 234, 371, 416
Hpy166II GTNNAC 2 cut(s) 105, 241
Hpy188I TCNGA 3 cut(s) 69, 127, 283
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 105, 241
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 179, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 3 cut(s) 186, 310, 426
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 17, 194
MalI GATC 1 cut(s) 280
MboI GATC 1 cut(s) 278
MboII GAAGA 2 cut(s) 365, 411
MflI RGATCY 1 cut(s) 278
MluCI AATT 2 cut(s) 226, 268
MlyI GAGTC 3 cut(s) 25, 162, 410
MnlI CCTC 4 cut(s) 63, 130, 319, 349
MslI CAYNNNNRTG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 95, 117, 405
MvaI CCWGG 3 cut(s) 95, 117, 405
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 1 cut(s) 278
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 205, 307
NmuCI GTSAC 2 cut(s) 17, 194
NspI RCATGY 1 cut(s) 247
PasI CCCWGGG 1 cut(s) 404
PciI ACATGT 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 2 cut(s) 234, 371
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 3 cut(s) 24, 161, 410
PpsI GAGTC 3 cut(s) 24, 161, 410
PscI ACATGT 1 cut(s) 243
Psp6I CCWGG 3 cut(s) 93, 115, 403
PspGI CCWGG 3 cut(s) 93, 115, 403
PspN4I GGNNCC 2 cut(s) 205, 307
PspPI GGNCC 1 cut(s) 305
PsrI GAACNNNNNNTAC 2 cut(s) 157, 189
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 3 cut(s) 25, 162, 410
ScrFI CCNGG 3 cut(s) 95, 117, 405
SetI ASST 6 cut(s) 54, 175, 192, 201, 223, 298
SfaNI GCATC 1 cut(s) 188
SfcI CTRYAG 2 cut(s) 261, 273
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 2 cut(s) 226, 268
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 93, 115, 403
TaiI ACGT 1 cut(s) 201
TasI AATT 2 cut(s) 226, 268
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 234, 371
TscAI CASTG 3 cut(s) 91, 166, 333
TseFI GTSAC 2 cut(s) 17, 194
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 17, 194
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 91, 166, 333
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 268
XceI RCATGY 1 cut(s) 247
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.