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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3079 |
| Acc16I | TGCGCA | 2 cut(s) | 7067, 7412 |
| Acc36I | ACCTGC | 2 cut(s) | 181, 3079 |
| AccBSI | CCGCTC | 1 cut(s) | 3541 |
| AccI | GTMKAC | 3 cut(s) | 315, 2789, 5132 |
| AccIII | TCCGGA | 1 cut(s) | 5984 |
| AciI | CCGC | 8 cut(s) | 227, 3272, 3541, 6243, 6881, 7264, 7402, 7621 |
| AcoI | YGGCCR | 4 cut(s) | 40, 4878, 6601, 7309 |
| AdeI | CACNNNGTG | 1 cut(s) | 6957 |
| AfeI | AGCGCT | 1 cut(s) | 2950 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 432, 1875, 2106, 4093, 4688, 5146, 5493, 6249, 6880 |
| AflII | CTTAAG | 4 cut(s) | 3515, 4378, 4537, 6937 |
| AflIII | ACRYGT | 4 cut(s) | 2086, 2317, 2872, 7586 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4078 |
| AhlI | ACTAGT | 4 cut(s) | 362, 2336, 6143, 7466 |
| AjiI | CACGTC | 3 cut(s) | 265, 3080, 3130 |
| AjnI | CCWGG | 7 cut(s) | 93, 3818, 4770, 5140, 5442, 7311, 7456 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3832, 3864, 3908, 3940, 4787, 4819 |
| AleI | CACNNNNGTG | 1 cut(s) | 267 |
| Alw21I | GWGCWC | 9 cut(s) | 396, 873, 1947, 2178, 5751, 5907, 6525, 6962, 7466 |
| Alw44I | GTGCAC | 3 cut(s) | 5747, 6521, 6958 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 311, 1412, 3472, 4958, 7376 |
| Ama87I | CYCGRG | 2 cut(s) | 1317, 5831 |
| Aor13HI | TCCGGA | 1 cut(s) | 5984 |
| Aor51HI | AGCGCT | 1 cut(s) | 2950 |
| ApaLI | GTGCAC | 3 cut(s) | 5747, 6521, 6958 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3609, 3641 |
| AseI | ATTAAT | 4 cut(s) | 732, 1209, 1788, 5814 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2418, 3282, 5627 |
| AspLEI | GCGC | 8 cut(s) | 634, 1690, 2460, 2951, 5839, 7068, 7413, 7660 |
| AspS9I | GGNCC | 8 cut(s) | 380, 857, 1108, 1436, 1951, 2182, 6496, 7644 |
| AsuNHI | GCTAGC | 2 cut(s) | 2945, 5452 |
| AvaI | CYCGRG | 2 cut(s) | 1317, 5831 |
| AvaII | GGWCC | 6 cut(s) | 380, 857, 1436, 1951, 2182, 6496 |
| AxyI | CCTNAGG | 2 cut(s) | 4513, 4672 |
| BaeGI | GKGCMC | 5 cut(s) | 1040, 1452, 5751, 6525, 6962 |
| BalI | TGGCCA | 2 cut(s) | 4880, 6603 |
| BamHI | GGATCC | 1 cut(s) | 7453 |
| BanII | GRGCYC | 3 cut(s) | 1947, 2178, 5907 |
| BauI | CACGAG | 3 cut(s) | 5286, 6801, 7019 |
| BbsI | GAAGAC | 6 cut(s) | 3342, 3660, 4077, 4149, 7136, 7311 |
| Bbv12I | GWGCWC | 9 cut(s) | 396, 873, 1947, 2178, 5751, 5907, 6525, 6962, 7466 |
| BbvCI | CCTCAGC | 4 cut(s) | 534, 1441, 1590, 5505 |
| BceAI | ACGGC | 3 cut(s) | 3, 27, 7324 |
| BciT130I | CCWGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| BciVI | GTATCC | 1 cut(s) | 5992 |
| BclI | TGATCA | 1 cut(s) | 4240 |
| BcuI | ACTAGT | 4 cut(s) | 362, 2336, 6143, 7466 |
| BfoI | RGCGCY | 2 cut(s) | 2461, 2952 |
| BfrI | CTTAAG | 4 cut(s) | 3515, 4378, 4537, 6937 |
| BfuAI | ACCTGC | 2 cut(s) | 181, 3079 |
| BfuI | GTATCC | 1 cut(s) | 5992 |
| BglII | AGATCT | 5 cut(s) | 2397, 2617, 3645, 6208, 6638 |
| BlpI | GCTNAGC | 1 cut(s) | 3137 |
| BmcAI | AGTACT | 5 cut(s) | 517, 994, 1573, 4598, 7122 |
| Bme1390I | CCNGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| Bme18I | GGWCC | 6 cut(s) | 380, 857, 1436, 1951, 2182, 6496 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4078 |
| BmeT110I | CYCGRG | 2 cut(s) | 1317, 5831 |
| BmgBI | CACGTC | 3 cut(s) | 265, 3080, 3130 |
| BmgT120I | GGNCC | 8 cut(s) | 380, 857, 1108, 1436, 1951, 2182, 6496, 7644 |
| BmiI | GGNNCC | 9 cut(s) | 382, 859, 1438, 1952, 2183, 4020, 7381, 7455, 7536 |
| BmrFI | CCNGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| BmrI | ACTGGG | 3 cut(s) | 528, 1005, 2508 |
| BmtI | GCTAGC | 2 cut(s) | 2949, 5456 |
| BmuI | ACTGGG | 3 cut(s) | 528, 1005, 2508 |
| BoxI | GACNNNNGTC | 2 cut(s) | 4232, 5712 |
| BpiI | GAAGAC | 6 cut(s) | 3342, 3660, 4077, 4149, 7136, 7311 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2087, 2119, 5033, 5065, 6254, 6286 |
| BpmI | CTGGAG | 7 cut(s) | 791, 1080, 1259, 1659, 3209, 4070, 5426 |
| Bpu10I | CCTNAGC | 6 cut(s) | 534, 1441, 1590, 1946, 2177, 5505 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3137 |
| BpuEI | CTTGAG | 8 cut(s) | 2474, 3518, 4301, 5200, 6064, 6593, 7109, 7271 |
| Bsa29I | ATCGAT | 1 cut(s) | 4035 |
| BsaAI | YACGTR | 1 cut(s) | 7587 |
| BsaBI | GATNNNNATC | 5 cut(s) | 1145, 2367, 3756, 4854, 7452 |
| BsaI | GGTCTC | 5 cut(s) | 235, 1327, 4423, 4582, 4712 |
| BsaWI | WCCGGW | 3 cut(s) | 2482, 4601, 5984 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 4934, 4964, 6524, 6554, 7453, 7483 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 432, 1875, 2106, 4093, 4688, 5146, 5493, 6249, 6880 |
| Bse118I | RCCGGY | 1 cut(s) | 3773 |
| Bse21I | CCTNAGG | 2 cut(s) | 4513, 4672 |
| Bse3DI | GCAATG | 3 cut(s) | 710, 1766, 3372 |
| Bse8I | GATNNNNATC | 5 cut(s) | 1145, 2367, 3756, 4854, 7452 |
| BseAI | TCCGGA | 1 cut(s) | 5984 |
| BseBI | CCWGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| BseCI | ATCGAT | 1 cut(s) | 4035 |
| BseJI | GATNNNNATC | 5 cut(s) | 1145, 2367, 3756, 4854, 7452 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 432, 1875, 2106, 4093, 4688, 5146, 5493, 6249, 6880 |
| BseMI | GCAATG | 3 cut(s) | 710, 1766, 3372 |
| BseSI | GKGCMC | 5 cut(s) | 1040, 1452, 5751, 6525, 6962 |
| BsgI | GTGCAG | 4 cut(s) | 3152, 3425, 4085, 4716 |
| BshVI | ATCGAT | 1 cut(s) | 4035 |
| BsiHKAI | GWGCWC | 9 cut(s) | 396, 873, 1947, 2178, 5751, 5907, 6525, 6962, 7466 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1317, 5831 |
| BsiSI | CCGG | 4 cut(s) | 2483, 3774, 4602, 5985 |
| BslFI | GGGAC | 6 cut(s) | 366, 535, 843, 1012, 1422, 3412 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 432, 1875, 2106, 4093, 4688, 5146, 5493, 6249, 6880 |
| BsmBI | CGTCTC | 1 cut(s) | 264 |
| BsmFI | GGGAC | 6 cut(s) | 366, 535, 843, 1012, 1422, 3412 |
| BsmI | GAATGC | 1 cut(s) | 1864 |
| Bso31I | GGTCTC | 5 cut(s) | 235, 1327, 4423, 4582, 4712 |
| BsoBI | CYCGRG | 2 cut(s) | 1317, 5831 |
| Bsp13I | TCCGGA | 1 cut(s) | 5984 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3137 |
| BspACI | CCGC | 8 cut(s) | 227, 3272, 3541, 6243, 6881, 7264, 7402, 7621 |
| BspDI | ATCGAT | 1 cut(s) | 4035 |
| BspEI | TCCGGA | 1 cut(s) | 5984 |
| BspHI | TCATGA | 2 cut(s) | 5907, 7339 |
| BspLI | GGNNCC | 9 cut(s) | 382, 859, 1438, 1952, 2183, 4020, 7381, 7455, 7536 |
| BspMAI | CTGCAG | 7 cut(s) | 178, 1408, 2545, 3003, 4299, 5764, 6900 |
| BspMI | ACCTGC | 2 cut(s) | 181, 3079 |
| BspOI | GCTAGC | 2 cut(s) | 2949, 5456 |
| BspQI | GCTCTTC | 2 cut(s) | 5442, 6830 |
| BspTI | CTTAAG | 4 cut(s) | 3515, 4378, 4537, 6937 |
| BspTNI | GGTCTC | 5 cut(s) | 235, 1327, 4423, 4582, 4712 |
| BsrBI | CCGCTC | 1 cut(s) | 3541 |
| BsrDI | GCAATG | 3 cut(s) | 710, 1766, 3372 |
| BsrFI | RCCGGY | 1 cut(s) | 3773 |
| BssAI | RCCGGY | 1 cut(s) | 3773 |
| BssSI | CACGAG | 3 cut(s) | 5286, 6801, 7019 |
| BssT1I | CCWWGG | 7 cut(s) | 833, 3384, 4168, 4410, 4569, 5487, 6516 |
| Bst2BI | CACGAG | 3 cut(s) | 5286, 6801, 7019 |
| Bst2UI | CCWGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| Bst6I | CTCTTC | 7 cut(s) | 496, 973, 1752, 3636, 3758, 5442, 6830 |
| BstAFI | CTTAAG | 4 cut(s) | 3515, 4378, 4537, 6937 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 4461, 4620, 4927, 5212, 5462 |
| BstBAI | YACGTR | 1 cut(s) | 7587 |
| BstH2I | RGCGCY | 2 cut(s) | 2461, 2952 |
| BstHHI | GCGC | 8 cut(s) | 634, 1690, 2460, 2951, 5839, 7068, 7413, 7660 |
| BstNI | CCWGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| BstNSI | RCATGY | 8 cut(s) | 1118, 1697, 2090, 2321, 2876, 3997, 6141, 7658 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 4232, 5712 |
| BstSCI | CCNGG | 7 cut(s) | 93, 3818, 4770, 5140, 5442, 7311, 7456 |
| BstSLI | GKGCMC | 5 cut(s) | 1040, 1452, 5751, 6525, 6962 |
| BstV2I | GAAGAC | 6 cut(s) | 3342, 3660, 4077, 4149, 7136, 7311 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 7450 |
| Bsu15I | ATCGAT | 1 cut(s) | 4035 |
| Bsu36I | CCTNAGG | 2 cut(s) | 4513, 4672 |
| BsuI | GTATCC | 1 cut(s) | 5992 |
| BsuTUI | ATCGAT | 1 cut(s) | 4035 |
| BtgZI | GCGATG | 3 cut(s) | 6563, 7087, 7377 |
| BtrI | CACGTC | 3 cut(s) | 265, 3080, 3130 |
| BtsI | GCAGTG | 7 cut(s) | 91, 396, 873, 1452, 5757, 5983, 7075 |
| BveI | ACCTGC | 2 cut(s) | 181, 3079 |
| CaiI | CAGNNNCTG | 5 cut(s) | 311, 1412, 3472, 4958, 7376 |
| CciI | TCATGA | 2 cut(s) | 5907, 7339 |
| CfoI | GCGC | 8 cut(s) | 634, 1690, 2460, 2951, 5839, 7068, 7413, 7660 |
| Cfr10I | RCCGGY | 1 cut(s) | 3773 |
| Cfr13I | GGNCC | 8 cut(s) | 380, 857, 1108, 1436, 1951, 2182, 6496, 7644 |
| ClaI | ATCGAT | 1 cut(s) | 4035 |
| CseI | GACGC | 1 cut(s) | 168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 67, 102 |
| DraIII | CACNNNGTG | 1 cut(s) | 6957 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4078 |
| EaeI | YGGCCR | 4 cut(s) | 40, 4878, 6601, 7309 |
| Eam1104I | CTCTTC | 7 cut(s) | 496, 973, 1752, 3636, 3758, 5442, 6830 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4078 |
| EarI | CTCTTC | 7 cut(s) | 496, 973, 1752, 3636, 3758, 5442, 6830 |
| EciI | GGCGGA | 1 cut(s) | 3287 |
| Ecl136II | GAGCTC | 3 cut(s) | 1945, 2176, 5905 |
| Eco130I | CCWWGG | 7 cut(s) | 833, 3384, 4168, 4410, 4569, 5487, 6516 |
| Eco147I | AGGCCT | 3 cut(s) | 1901, 2132, 5156 |
| Eco24I | GRGCYC | 3 cut(s) | 1947, 2178, 5907 |
| Eco31I | GGTCTC | 5 cut(s) | 235, 1327, 4423, 4582, 4712 |
| Eco32I | GATATC | 2 cut(s) | 3862, 4856 |
| Eco47I | GGWCC | 6 cut(s) | 380, 857, 1436, 1951, 2182, 6496 |
| Eco47III | AGCGCT | 1 cut(s) | 2950 |
| Eco53kI | GAGCTC | 3 cut(s) | 1945, 2176, 5905 |
| Eco81I | CCTNAGG | 2 cut(s) | 4513, 4672 |
| Eco88I | CYCGRG | 2 cut(s) | 1317, 5831 |
| EcoICRI | GAGCTC | 3 cut(s) | 1945, 2176, 5905 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1951, 2182 |
| EcoRI | GAATTC | 5 cut(s) | 343, 598, 1399, 1654, 2467 |
| EcoRII | CCWGG | 7 cut(s) | 93, 3818, 4770, 5140, 5442, 7311, 7456 |
| EcoRV | GATATC | 2 cut(s) | 3862, 4856 |
| EcoT14I | CCWWGG | 7 cut(s) | 833, 3384, 4168, 4410, 4569, 5487, 6516 |
| EcoT22I | ATGCAT | 1 cut(s) | 4341 |
| EcoT38I | GRGCYC | 3 cut(s) | 1947, 2178, 5907 |
| ErhI | CCWWGG | 7 cut(s) | 833, 3384, 4168, 4410, 4569, 5487, 6516 |
| Esp3I | CGTCTC | 1 cut(s) | 264 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3270, 3302, 4914, 4946 |
| FaqI | GGGAC | 6 cut(s) | 366, 535, 843, 1012, 1422, 3412 |
| FauI | CCCGC | 3 cut(s) | 3534, 6250, 7257 |
| FbaI | TGATCA | 1 cut(s) | 4240 |
| FblI | GTMKAC | 3 cut(s) | 315, 2789, 5132 |
| FriOI | GRGCYC | 3 cut(s) | 1947, 2178, 5907 |
| FspI | TGCGCA | 2 cut(s) | 7067, 7412 |
| GlaI | GCGC | 8 cut(s) | 633, 1689, 2459, 2950, 5838, 7067, 7412, 7659 |
| GsuI | CTGGAG | 7 cut(s) | 791, 1080, 1259, 1659, 3209, 4070, 5426 |
| HaeII | RGCGCY | 2 cut(s) | 2461, 2952 |
| HapII | CCGG | 4 cut(s) | 2483, 3774, 4602, 5985 |
| HgaI | GACGC | 1 cut(s) | 168 |
| HhaI | GCGC | 8 cut(s) | 634, 1690, 2460, 2951, 5839, 7068, 7413, 7660 |
| Hin6I | GCGC | 8 cut(s) | 632, 1688, 2458, 2949, 5837, 7066, 7411, 7658 |
| HinP1I | GCGC | 8 cut(s) | 632, 1688, 2458, 2949, 5837, 7066, 7411, 7658 |
| HincII | GTYRAC | 8 cut(s) | 316, 1372, 2074, 2305, 2530, 2917, 4102, 5047 |
| HindII | GTYRAC | 8 cut(s) | 316, 1372, 2074, 2305, 2530, 2917, 4102, 5047 |
| HpaI | GTTAAC | 2 cut(s) | 2917, 4102 |
| HpaII | CCGG | 4 cut(s) | 2483, 3774, 4602, 5985 |
| HpyCH4IV | ACGT | 6 cut(s) | 264, 2295, 3079, 3129, 6417, 7586 |
| HpySE526I | ACGT | 6 cut(s) | 264, 2295, 3079, 3129, 6417, 7586 |
| HspAI | GCGC | 8 cut(s) | 632, 1688, 2458, 2949, 5837, 7066, 7411, 7658 |
| Kpn2I | TCCGGA | 1 cut(s) | 5984 |
| Ksp22I | TGATCA | 1 cut(s) | 4240 |
| KspAI | GTTAAC | 2 cut(s) | 2917, 4102 |
| LguI | GCTCTTC | 2 cut(s) | 5442, 6830 |
| LmnI | GCTCC | 6 cut(s) | 3175, 3928, 4018, 6442, 6589, 7461 |
| MaeII | ACGT | 6 cut(s) | 264, 2295, 3079, 3129, 6417, 7586 |
| MbiI | CCGCTC | 1 cut(s) | 3541 |
| MfeI | CAATTG | 4 cut(s) | 2354, 3056, 5997, 7437 |
| MlsI | TGGCCA | 2 cut(s) | 4880, 6603 |
| MluNI | TGGCCA | 2 cut(s) | 4880, 6603 |
| MmeI | TCCRAC | 7 cut(s) | 2391, 3906, 4720, 4785, 5286, 6184, 6522 |
| Mox20I | TGGCCA | 2 cut(s) | 4880, 6603 |
| Mph1103I | ATGCAT | 1 cut(s) | 4341 |
| MroI | TCCGGA | 1 cut(s) | 5984 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2418, 3282, 5627 |
| MscI | TGGCCA | 2 cut(s) | 4880, 6603 |
| MslI | CAYNNNNRTG | 9 cut(s) | 267, 2091, 2322, 3234, 4344, 4692, 5850, 6114, 7448 |
| Msp20I | TGGCCA | 2 cut(s) | 4880, 6603 |
| MspA1I | CMGCKG | 4 cut(s) | 2435, 4700, 5765, 6341 |
| MspCI | CTTAAG | 4 cut(s) | 3515, 4378, 4537, 6937 |
| MspI | CCGG | 4 cut(s) | 2483, 3774, 4602, 5985 |
| MspR9I | CCNGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| MunI | CAATTG | 4 cut(s) | 2354, 3056, 5997, 7437 |
| Mva1269I | GAATGC | 1 cut(s) | 1864 |
| MvaI | CCWGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| NheI | GCTAGC | 2 cut(s) | 2945, 5452 |
| NlaIV | GGNNCC | 9 cut(s) | 382, 859, 1438, 1952, 2183, 4020, 7381, 7455, 7536 |
| NmeAIII | GCCGAG | 2 cut(s) | 365, 842 |
| NsbI | TGCGCA | 2 cut(s) | 7067, 7412 |
| NsiI | ATGCAT | 1 cut(s) | 4341 |
| NspI | RCATGY | 8 cut(s) | 1118, 1697, 2090, 2321, 2876, 3997, 6141, 7658 |
| OliI | CACNNNNGTG | 1 cut(s) | 267 |
| PaeI | GCATGC | 2 cut(s) | 6141, 7658 |
| PagI | TCATGA | 2 cut(s) | 5907, 7339 |
| PaqCI | CACCTGC | 1 cut(s) | 3079 |
| PceI | AGGCCT | 3 cut(s) | 1901, 2132, 5156 |
| PciI | ACATGT | 3 cut(s) | 2086, 2317, 2872 |
| PciSI | GCTCTTC | 2 cut(s) | 5442, 6830 |
| PctI | GAATGC | 1 cut(s) | 1864 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2418, 3282, 5627 |
| PfoI | TCCNGGA | 2 cut(s) | 3818, 5442 |
| Ppu21I | YACGTR | 1 cut(s) | 7587 |
| PpuMI | RGGWCCY | 2 cut(s) | 1951, 2182 |
| PscI | ACATGT | 3 cut(s) | 2086, 2317, 2872 |
| PshAI | GACNNNNGTC | 2 cut(s) | 4232, 5712 |
| PshBI | ATTAAT | 4 cut(s) | 732, 1209, 1788, 5814 |
| Psp124BI | GAGCTC | 3 cut(s) | 1947, 2178, 5907 |
| Psp5II | RGGWCCY | 2 cut(s) | 1951, 2182 |
| Psp6I | CCWGG | 7 cut(s) | 93, 3818, 4770, 5140, 5442, 7311, 7456 |
| PspGI | CCWGG | 7 cut(s) | 93, 3818, 4770, 5140, 5442, 7311, 7456 |
| PspN4I | GGNNCC | 9 cut(s) | 382, 859, 1438, 1952, 2183, 4020, 7381, 7455, 7536 |
| PspPI | GGNCC | 8 cut(s) | 380, 857, 1108, 1436, 1951, 2182, 6496, 7644 |
| PspPPI | RGGWCCY | 2 cut(s) | 1951, 2182 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 6552, 6584 |
| PstI | CTGCAG | 7 cut(s) | 178, 1408, 2545, 3003, 4299, 5764, 6900 |
| PstNI | CAGNNNCTG | 5 cut(s) | 311, 1412, 3472, 4958, 7376 |
| PvuII | CAGCTG | 4 cut(s) | 2435, 4700, 5765, 6341 |
| RseI | CAYNNNNRTG | 9 cut(s) | 267, 2091, 2322, 3234, 4344, 4692, 5850, 6114, 7448 |
| SacI | GAGCTC | 3 cut(s) | 1947, 2178, 5907 |
| SalI | GTCGAC | 1 cut(s) | 314 |
| SapI | GCTCTTC | 2 cut(s) | 5442, 6830 |
| Sau96I | GGNCC | 8 cut(s) | 380, 857, 1108, 1436, 1951, 2182, 6496, 7644 |
| ScaI | AGTACT | 5 cut(s) | 517, 994, 1573, 4598, 7122 |
| ScrFI | CCNGG | 7 cut(s) | 95, 3820, 4772, 5142, 5444, 7313, 7458 |
| SinI | GGWCC | 6 cut(s) | 380, 857, 1436, 1951, 2182, 6496 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 267, 2091, 2322, 3234, 4344, 4692, 5850, 6114, 7448 |
| SpeI | ACTAGT | 4 cut(s) | 362, 2336, 6143, 7466 |
| SphI | GCATGC | 2 cut(s) | 6141, 7658 |
| SseBI | AGGCCT | 3 cut(s) | 1901, 2132, 5156 |
| SsiI | CCGC | 8 cut(s) | 227, 3272, 3541, 6243, 6881, 7264, 7402, 7621 |
| SspI | AATATT | 6 cut(s) | 730, 1207, 1708, 1786, 1939, 5681 |
| SstI | GAGCTC | 3 cut(s) | 1947, 2178, 5907 |
| StuI | AGGCCT | 3 cut(s) | 1901, 2132, 5156 |
| StyD4I | CCNGG | 7 cut(s) | 93, 3818, 4770, 5140, 5442, 7311, 7456 |
| StyI | CCWWGG | 7 cut(s) | 833, 3384, 4168, 4410, 4569, 5487, 6516 |
| TaiI | ACGT | 6 cut(s) | 267, 2298, 3082, 3132, 6420, 7589 |
| TaqI | TCGA | 9 cut(s) | 315, 1125, 2012, 2243, 3990, 4035, 4745, 5868, 7054 |
| TauI | GCSGC | 1 cut(s) | 7624 |
| TspGWI | ACGGA | 5 cut(s) | 257, 288, 658, 1344, 6662 |
| Vha464I | CTTAAG | 4 cut(s) | 3515, 4378, 4537, 6937 |
| VneI | GTGCAC | 3 cut(s) | 5747, 6521, 6958 |
| VpaK11BI | GGWCC | 6 cut(s) | 380, 857, 1436, 1951, 2182, 6496 |
| VspI | ATTAAT | 4 cut(s) | 732, 1209, 1788, 5814 |
| XbaI | TCTAGA | 2 cut(s) | 2839, 4858 |
| XceI | RCATGY | 8 cut(s) | 1118, 1697, 2090, 2321, 2876, 3997, 6141, 7658 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 6970 |
| XmiI | GTMKAC | 3 cut(s) | 315, 2789, 5132 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2418, 3282, 5627 |
| ZrmI | AGTACT | 5 cut(s) | 517, 994, 1573, 4598, 7122 |
| Zsp2I | ATGCAT | 1 cut(s) | 4341 |