Rroxscaffold_7G00162960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001092
Physical Location & Seq
Forward (+)
5309353 .. 5309887
535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162960.1

Sequence Viewer

Length: 501 bp
ATGCAAGCACTTGATGAGGAGGAGGTACAGATGCAAGGTATCACCTACAAAATTAAGGAACTGGAAAAGATTGTGGAACAAAAGAACCTAGATTTAGAGAACCTTGAAGCTTCTCGTGGGAAGGTTATGAAAAAGCTCTCCATCACTGTGTATAAGTTTGACGAGCTGCATCACCTATCTGCAAGCCTCCTTGAGGAAGTTGAAAAATTGCAGTCACAATTGCAAGATCGGGATGCAGAGATTTCTTTCTTAAGGCAGGAGGTCACCAGGTGCACCAATGATGTTCTGGTTGCATCACAAGTCAGTAAGAAGGGAAATTCAGATGAGATCCACGAGTTATTAACATGGTTTGATATGAATATTGCTGCATTTGGGGTCCACAGTGAGTATCTTGAAAATAAGAACAACAGTGACGTCCCTGAACAAAAGGAAAATTGGGGGATCTACGGGCTGCGGCTCAAAGCAAAGATATATTGTTGCAAGAAGAAAGGACTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.22

Weight (kDa)

5.49

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AciI CCGC 1 cut(s) 454
AclWI GGATC 2 cut(s) 322, 449
AcsI RAATTY 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 250
AgsI TTSAA 3 cut(s) 107, 203, 395
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 3 cut(s) 110, 136, 166
AluI AGCT 3 cut(s) 110, 136, 166
Alw21I GWGCWC 1 cut(s) 275
Alw44I GTGCAC 1 cut(s) 271
AlwI GGATC 2 cut(s) 322, 449
ApaLI GTGCAC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 166, 365, 451
ApoI RAATTY 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 34, 164, 256
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 275
BauI CACGAG 2 cut(s) 114, 332
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 153, 352, 438
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 268
BfaI CTAG 1 cut(s) 89
BfrI CTTAAG 1 cut(s) 250
BisI GCNGC 4 cut(s) 167, 366, 452, 455
BlsI GCNGC 4 cut(s) 168, 367, 453, 456
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 4 cut(s) 21, 178, 223, 302
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 32, 35
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 3 cut(s) 153, 352, 438
BsiHKAI GWGCWC 1 cut(s) 275
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 226, 327, 441
BspACI CCGC 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 377
BspPI GGATC 2 cut(s) 322, 449
BspTI CTTAAG 1 cut(s) 250
BsrI ACTGG 1 cut(s) 66
BssMI GATC 3 cut(s) 226, 327, 441
BssNI GRCGYC 1 cut(s) 414
BssSI CACGAG 2 cut(s) 114, 332
Bst2BI CACGAG 2 cut(s) 114, 332
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 3 cut(s) 148, 383, 410
BstACI GRCGYC 1 cut(s) 414
BstAFI CTTAAG 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 6, 184
BstEII GGTNACC 1 cut(s) 262
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 3 cut(s) 229, 330, 444
BstMBI GATC 3 cut(s) 226, 327, 441
BstNI CCWGG 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 153, 352, 438
BstX2I RGATCY 2 cut(s) 327, 441
BstYI RGATCY 2 cut(s) 327, 441
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 3 cut(s) 144, 388, 415
Cac8I GCNNGC 2 cut(s) 6, 184
Cfr13I GGNCC 1 cut(s) 376
CsiI ACCWGGT 1 cut(s) 266
Csp6I GTAC 1 cut(s) 26
CviAII CATG 1 cut(s) 345
CviJI RGCY 6 cut(s) 110, 136, 166, 186, 451, 457
CviKI_1 RGCY 6 cut(s) 110, 136, 166, 186, 451, 457
CviQI GTAC 1 cut(s) 26
DpnI GATC 3 cut(s) 228, 329, 443
DpnII GATC 3 cut(s) 226, 327, 441
DraIII CACNNNGTG 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 376
Eco91I GGTNACC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 348
FaiI YATR 5 cut(s) 128, 153, 346, 356, 472
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 344
Fnu4HI GCNGC 4 cut(s) 167, 366, 452, 455
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 4 cut(s) 167, 366, 452, 455
FspBI CTAG 1 cut(s) 89
GluI GCNGC 4 cut(s) 167, 366, 452, 455
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 108
HphI GGTGA 3 cut(s) 34, 164, 256
Hpy166II GTNNAC 2 cut(s) 273, 379
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 230, 392
Hpy8I GTNNAC 2 cut(s) 273, 379
HpyAV CCTTC 2 cut(s) 115, 304
HpyCH4III ACNGT 3 cut(s) 148, 383, 410
HpyCH4IV ACGT 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 348
Kzo9I GATC 3 cut(s) 226, 327, 441
LpnPI CCDG 6 cut(s) 47, 242, 253, 272, 280, 432
Lsp1109I GCAGC 3 cut(s) 153, 352, 438
LweI GCATC 4 cut(s) 21, 178, 223, 302
MabI ACCWGGT 1 cut(s) 266
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 3 cut(s) 213, 262, 410
MalI GATC 3 cut(s) 228, 329, 443
MboI GATC 3 cut(s) 226, 327, 441
MboII GAAGA 1 cut(s) 496
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 2 cut(s) 327, 441
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 5 cut(s) 51, 206, 218, 316, 433
MnlI CCTC 6 cut(s) 10, 13, 16, 187, 197, 253
MseI TTAA 3 cut(s) 54, 251, 341
MslI CAYNNNNRTG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 268
MunI CAATTG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 268
NdeII GATC 3 cut(s) 226, 327, 441
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 3 cut(s) 213, 262, 410
PkrI GCNGC 4 cut(s) 168, 367, 453, 456
Psp6I CCWGG 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 2 cut(s) 327, 441
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 146
SaqAI TTAA 3 cut(s) 54, 251, 341
SatI GCNGC 4 cut(s) 167, 366, 452, 455
Sau3AI GATC 3 cut(s) 226, 327, 441
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 275
SexAI ACCWGGT 1 cut(s) 266
SfaNI GCATC 4 cut(s) 21, 178, 223, 302
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 191, 250
SmoI CTYRAG 2 cut(s) 191, 250
Sse9I AATT 5 cut(s) 51, 206, 218, 316, 433
SsiI CCGC 1 cut(s) 454
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 148, 383, 410
TaiI ACGT 1 cut(s) 417
TasI AATT 5 cut(s) 51, 206, 218, 316, 433
TauI GCSGC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 54, 251, 341
Tru9I TTAA 3 cut(s) 54, 251, 341
TscAI CASTG 3 cut(s) 151, 388, 415
TseFI GTSAC 3 cut(s) 213, 262, 410
TseI GCWGC 3 cut(s) 166, 365, 451
Tsp45I GTSAC 3 cut(s) 213, 262, 410
TspDTI ATGAA 2 cut(s) 143, 371
TspRI CASTG 3 cut(s) 151, 388, 415
Vha464I CTTAAG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 376
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.