Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001092

Physical Location & Seq

Genomic Coordinates Forward (+)

5300727 .. 5309345

Gene Structure 8619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCATATGCTGGTTTATTATTTCCCTAGTGATTCACCTCTATTACATTCTTCTCTTATAACATCTTCTAATTTTGGGTTCTCTGTACAGGATAACTCTATTTCAATGAATTATAGGTCAGACACCAATGCGCATGGACATTTTGGTGACAGTTTTGTCATTGAAACCTTTACATACATAACACATTATGTGCAAGAGCTCATGATGGAGATTGGTGTGCTTAAAGAAAAATTAGATGAACACTCAATGTCTTTGCATGAAAAAACTAGCAGTGTATCCAGATCGGTGGCAATTGTTCGTGGAGAGATAACTTCCAACAACGAGTCATTTGAAGCCTTGAGGAGAGACTTTTTGCAGATGGAAATGGTCAAAAAGGAAAAGGACAAGGAACTTGTTGTCTTGCATAGAAATGCTGCTGTGCTTTTTGAAGCATGCACTAGTTCAGCTGTGGAAATAAATAGAAGAAAAGATGAATTGGTGGGAAATAGTTGGGCTGTTGGAGATCTGGGAATGACATCAAAAACAACAGAATTGCCCGCTTTCAGTGGAGAGGGTCAGCTTTACTCTGAGGAATCTGTTAGGTCTGTGGCAGACTGGCTATTGTCGGCTGCTAGTGATTTTGCTACTCTGACAGCTGAAATAGTGGAAGGCAGCCAAAAGGAAATGAAGCTTACCATTTCAAATTTGCAGAAAGAGCTTCAGGAGAAGGACGTTCAAAAGGAGAGGATTTTCATGGAGCTTGTAAGTCAAATCAAGGAAGCTGAAGCTACTGCAAGCAGCTATTCAGTGGACCTTGAATCTTCAAAAACCTTGGTGCATGATTTGGAGAAACAGTTGGAAGCGATGAAAGGTGAACGCAACTTATTTGAGCAGCGAGTAAAGGAGCTAGAAGATGGCCAGGCCACCTCTGACGAGTTACAACAGAGGGTCAGAACACTAACTGATGTGCTTGCTGCCAAAGACCATGGTGAGTTTTTCATTTGCACTTATCCAGTCCACACCTATATATATATATTCACACACACACGCACACACACACACACACACACACACACTATAAGCGGCTTTTTTAGATCCATAATTCTGGAAATTATCTGTGATTGTAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

42.07

Weight (kDa)

5.24

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31570 AT4G31570 AT4G31570 AT4G31570 AT4G31570 AT4G31570 AT4G31570
fragaria_vesca	FvH4_2g36740 FvH4_2g36740 FvH4_2g36740 FvH4_2g36740 FvH4_6g26670
malus_domestica	MD08G1126800.v1.1 MD15G1106500.v1.1
prunus_persica	Prupe.1G458700_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1
pyrus_communis	pycom08g10590 pycom15g09720
rosa_chinensis	RchiOBHm_Chr6g0305121 RchiOBHm_Chr6g0305291
rosa_laevigata	RLG00000010902 RLG00000010917
rosa_multiflora	Rmu_sc0000061.1_g000021 Rmu_sc0008509.1_g000028 Rmu_sc0020469.1_g000001 Rmu_sc0022119.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162950 Rroxscaffold_7G00162960 Rroxscaffold_7G00163130
rosa_rugosa	Rorug06G0337400 Rorug06G0337500 Rorug06G0337600 Rorug06G0337700 Rorug06G0337800 Rorug06G0339400
rosa_samantha	Rh6AG449300 Rh6AG450900 Rh6BG450400 Rh6BG451900 Rh6CG462900 Rh6CG465200 Rh6DG449700 Rh6DG449800 Rh6DG449900 Rh6DG451700
rosa_wichuraiana	Rw6G039140 Rw6G039300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AasI	GACNNNNNNGTC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	132
AciI	CCGC	2 cut(s)	537, 1062
AclWI	GGATC	1 cut(s)	1068
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	2 cut(s)	683, 783
AfaI	GTAC	1 cut(s)	87
AgsI	TTSAA	8 cut(s)	105, 164, 332, 428, 681, 716, 797, 804
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	897
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	1068
AoxI	GGCC	2 cut(s)	895, 900
ApeKI	GCWGC	6 cut(s)	413, 608, 651, 777, 871, 953
ApoI	RAATTY	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	4 cut(s)	27, 158, 863, 980
AvaII	GGWCC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	897
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	400, 595, 663, 789, 883, 940
BccI	CCATC	3 cut(s)	199, 352, 887
BciT130I	CCWGG	1 cut(s)	899
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	5 cut(s)	27, 267, 438, 612, 887
BfuI	GTATCC	1 cut(s)	286
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	7 cut(s)	414, 609, 652, 778, 872, 954, 1063
BlsI	GCNGC	7 cut(s)	415, 610, 653, 779, 873, 955, 1064
Bme1390I	CCNGG	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmrFI	CCNGG	1 cut(s)	899
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	810, 964
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bse1I	ACTGG	2 cut(s)	599, 992
BseBI	CCWGG	1 cut(s)	899
BseDI	CCNNGG	2 cut(s)	810, 964
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	2 cut(s)	599, 992
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	6 cut(s)	400, 595, 663, 789, 883, 940
BshFI	GGCC	2 cut(s)	897, 902
BsiHKAI	GWGCWC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	897, 902
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	281, 502, 1073
Bsp19I	CCATGG	1 cut(s)	964
BspACI	CCGC	2 cut(s)	537, 1062
BspANI	GGCC	2 cut(s)	897, 902
BspCNI	CTCAG	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	1 cut(s)	1068
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	599, 992
BssECI	CCNNGG	2 cut(s)	810, 964
BssMI	GATC	3 cut(s)	281, 502, 1073
BssT1I	CCWWGG	2 cut(s)	810, 964
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	2 cut(s)	152, 834
BstAUI	TGTACA	1 cut(s)	85
BstC8I	GCNNGC	4 cut(s)	433, 537, 775, 951
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	964
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	284, 505, 1076
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	281, 502, 1073
BstMWI	GCNNNNNNNGC	1 cut(s)	694
BstNI	CCWGG	1 cut(s)	899
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	897
BstV1I	GCAGC	6 cut(s)	400, 595, 663, 789, 883, 940
BstX2I	RGATCY	2 cut(s)	502, 1073
BstXI	CCANNNNNNTGG	2 cut(s)	286, 1084
BstYI	RGATCY	2 cut(s)	502, 1073
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	897, 902
BtgI	CCRYGG	1 cut(s)	964
BtgZI	GCGATG	1 cut(s)	857
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	277, 550, 792
Cac8I	GCNNGC	4 cut(s)	433, 537, 775, 951
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	790
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	7 cut(s)	134, 202, 257, 432, 733, 818, 965
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	283, 504, 1075
DpnII	GATC	3 cut(s)	281, 502, 1073
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	895
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	810, 964
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	790
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	683, 783
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	897
EcoT14I	CCWWGG	2 cut(s)	810, 964
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	2 cut(s)	810, 964
FaeI	CATG	7 cut(s)	137, 205, 260, 435, 736, 821, 968
FatI	CATG	7 cut(s)	133, 201, 256, 431, 732, 817, 964
FauI	CCCGC	1 cut(s)	544
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	7 cut(s)	414, 609, 652, 778, 872, 954, 1063
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	7 cut(s)	414, 609, 652, 778, 872, 954, 1063
FspAI	RTGCGCAY	1 cut(s)	132
FspBI	CTAG	5 cut(s)	27, 267, 438, 612, 887
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	7 cut(s)	414, 609, 652, 778, 872, 954, 1063
HaeIII	GGCC	2 cut(s)	897, 902
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	7 cut(s)	137, 205, 260, 435, 736, 821, 968
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	32, 323, 572, 797
HphI	GGTGA	4 cut(s)	27, 158, 863, 980
Hpy166II	GTNNAC	3 cut(s)	790, 854, 997
Hpy188I	TCNGA	5 cut(s)	121, 568, 630, 910, 932
Hpy188III	TCNNGA	4 cut(s)	202, 279, 701, 1085
Hpy8I	GTNNAC	3 cut(s)	790, 854, 997
HpyAV	CCTTC	2 cut(s)	641, 700
HpyCH4III	ACNGT	2 cut(s)	152, 834
HpyCH4IV	ACGT	1 cut(s)	711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	694
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	7 cut(s)	137, 205, 260, 435, 736, 821, 968
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	3 cut(s)	281, 502, 1073
LmnI	GCTCC	2 cut(s)	736, 883
LpnPI	CCDG	9 cut(s)	74, 292, 491, 580, 686, 884, 911, 1005, 1070
Lsp1109I	GCAGC	6 cut(s)	400, 595, 663, 789, 883, 940
MaeI	CTAG	5 cut(s)	27, 267, 438, 612, 887
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	146, 915
MalI	GATC	3 cut(s)	283, 504, 1075
MboI	GATC	3 cut(s)	281, 502, 1073
MboII	GAAGA	5 cut(s)	42, 57, 474, 792, 902
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	2 cut(s)	502, 1073
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	897
MluNI	TGGCCA	1 cut(s)	897
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	3 cut(s)	339, 478, 816
MnlI	CCTC	7 cut(s)	48, 333, 544, 562, 717, 916, 918
Mox20I	TGGCCA	1 cut(s)	897
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	144, 408
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	2 cut(s)	446, 635
MspR9I	CCNGG	1 cut(s)	899
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	1 cut(s)	694
NcoI	CCATGG	1 cut(s)	964
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	3 cut(s)	281, 502, 1073
NlaIII	CATG	7 cut(s)	137, 205, 260, 435, 736, 821, 968
NmuCI	GTSAC	1 cut(s)	146
NsbI	TGCGCA	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	435
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	32, 572, 797
PkrI	GCNGC	7 cut(s)	415, 610, 653, 779, 873, 955, 1064
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	790
PsuI	RGATCY	2 cut(s)	502, 1073
PvuII	CAGCTG	2 cut(s)	446, 635
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	2 cut(s)	144, 408
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	7 cut(s)	414, 609, 652, 778, 872, 954, 1063
Sau3AI	GATC	3 cut(s)	281, 502, 1073
Sau96I	GGNCC	1 cut(s)	790
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	1 cut(s)	201
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	2 cut(s)	144, 408
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	437
SphI	GCATGC	1 cut(s)	435
SsiI	CCGC	2 cut(s)	537, 1062
SspMI	CTAG	5 cut(s)	27, 267, 438, 612, 887
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	897
StyI	CCWWGG	2 cut(s)	810, 964
TaaI	ACNGT	2 cut(s)	152, 834
TaiI	ACGT	1 cut(s)	714
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	1065
TfiI	GAWTC	3 cut(s)	32, 572, 797
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	277, 550, 792
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	6 cut(s)	413, 608, 651, 777, 871, 953
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	8 cut(s)	122, 252, 273, 486, 680, 721, 860, 967
TspRI	CASTG	3 cut(s)	277, 550, 792
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	1 cut(s)	435
XspI	CTAG	5 cut(s)	27, 267, 438, 612, 887
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.