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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 6923, 7268 |
| Acc36I | ACCTGC | 1 cut(s) | 181 |
| AccBSI | CCGCTC | 1 cut(s) | 3550 |
| AccI | GTMKAC | 3 cut(s) | 1416, 2798, 4988 |
| AciI | CCGC | 8 cut(s) | 227, 3281, 3550, 6099, 6737, 7120, 7258, 7377 |
| AclI | AACGTT | 1 cut(s) | 4918 |
| AcoI | YGGCCR | 3 cut(s) | 40, 2733, 7165 |
| AdeI | CACNNNGTG | 1 cut(s) | 6813 |
| AfeI | AGCGCT | 1 cut(s) | 2959 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 432, 2115, 4102, 4544, 5002, 5352, 6105, 6736 |
| AflII | CTTAAG | 3 cut(s) | 3524, 4387, 6793 |
| AflIII | ACRYGT | 3 cut(s) | 2095, 2326, 2881 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4087 |
| AhlI | ACTAGT | 5 cut(s) | 362, 1427, 2345, 5999, 7322 |
| AjiI | CACGTC | 2 cut(s) | 3089, 3139 |
| AjnI | CCWGG | 7 cut(s) | 93, 3827, 4626, 4996, 5301, 7167, 7312 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3841, 3873, 3917, 3949, 4643, 4675 |
| Alw21I | GWGCWC | 6 cut(s) | 396, 1956, 5610, 5763, 6818, 7322 |
| Alw44I | GTGCAC | 2 cut(s) | 5606, 6814 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 311, 356, 3481, 4814, 7232 |
| Ama87I | CYCGRG | 1 cut(s) | 1326 |
| Aor51HI | AGCGCT | 1 cut(s) | 2959 |
| AoxI | GGCC | 8 cut(s) | 40, 630, 1107, 1908, 2106, 2139, 2733, 7165 |
| ApaLI | GTGCAC | 2 cut(s) | 5606, 6814 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3618, 3650 |
| AseI | ATTAAT | 3 cut(s) | 732, 1209, 1797 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2427, 3291, 5486 |
| AspLEI | GCGC | 7 cut(s) | 1699, 2187, 2469, 2960, 5695, 6924, 7269 |
| AspS9I | GGNCC | 9 cut(s) | 265, 380, 631, 857, 1108, 1445, 1960, 2191, 6352 |
| AsuNHI | GCTAGC | 2 cut(s) | 2954, 5311 |
| AvaI | CYCGRG | 1 cut(s) | 1326 |
| AvaII | GGWCC | 7 cut(s) | 265, 380, 857, 1445, 1960, 2191, 6352 |
| AxyI | CCTNAGG | 1 cut(s) | 4528 |
| BaeGI | GKGCMC | 4 cut(s) | 1040, 1461, 5610, 6818 |
| BalI | TGGCCA | 1 cut(s) | 2735 |
| BamHI | GGATCC | 1 cut(s) | 7309 |
| BanII | GRGCYC | 2 cut(s) | 1956, 5763 |
| BauI | CACGAG | 3 cut(s) | 5145, 6657, 6875 |
| BbsI | GAAGAC | 6 cut(s) | 3351, 3669, 4086, 4158, 6992, 7167 |
| Bbv12I | GWGCWC | 6 cut(s) | 396, 1956, 5610, 5763, 6818, 7322 |
| BbvCI | CCTCAGC | 4 cut(s) | 534, 1450, 1599, 5364 |
| BceAI | ACGGC | 3 cut(s) | 3, 27, 7180 |
| BciT130I | CCWGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| BciVI | GTATCC | 1 cut(s) | 5848 |
| BclI | TGATCA | 1 cut(s) | 4249 |
| BcuI | ACTAGT | 5 cut(s) | 362, 1427, 2345, 5999, 7322 |
| BfoI | RGCGCY | 2 cut(s) | 2470, 2961 |
| BfrI | CTTAAG | 3 cut(s) | 3524, 4387, 6793 |
| BfuAI | ACCTGC | 1 cut(s) | 181 |
| BfuI | GTATCC | 1 cut(s) | 5848 |
| BglII | AGATCT | 4 cut(s) | 2406, 2626, 3654, 6064 |
| BlpI | GCTNAGC | 1 cut(s) | 3146 |
| BmcAI | AGTACT | 4 cut(s) | 517, 994, 1582, 6978 |
| Bme1390I | CCNGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| Bme18I | GGWCC | 7 cut(s) | 265, 380, 857, 1445, 1960, 2191, 6352 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4087 |
| BmeT110I | CYCGRG | 1 cut(s) | 1326 |
| BmgBI | CACGTC | 2 cut(s) | 3089, 3139 |
| BmgT120I | GGNCC | 9 cut(s) | 265, 380, 631, 857, 1108, 1445, 1960, 2191, 6352 |
| BmiI | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7237, 7311 |
| BmrFI | CCNGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| BmrI | ACTGGG | 4 cut(s) | 528, 1005, 1593, 2517 |
| BmtI | GCTAGC | 2 cut(s) | 2958, 5315 |
| BmuI | ACTGGG | 4 cut(s) | 528, 1005, 1593, 2517 |
| BoxI | GACNNNNGTC | 2 cut(s) | 4241, 5571 |
| BpiI | GAAGAC | 6 cut(s) | 3351, 3669, 4086, 4158, 6992, 7167 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2096, 2128, 4889, 4921, 6110, 6142 |
| BpmI | CTGGAG | 8 cut(s) | 791, 1080, 1268, 1668, 3218, 4079, 4253, 5285 |
| Bpu10I | CCTNAGC | 5 cut(s) | 534, 1450, 1599, 1955, 5364 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3146 |
| BpuEI | CTTGAG | 9 cut(s) | 2483, 3527, 4199, 4310, 5056, 5920, 6449, 6965, 7127 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2376, 3765, 4710, 7308 |
| BsaI | GGTCTC | 4 cut(s) | 235, 4432, 4568, 5303 |
| BsaWI | WCCGGW | 1 cut(s) | 2491 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 4790, 4820, 6380, 6410, 6449, 6479, 7309, 7339 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 432, 2115, 4102, 4544, 5002, 5352, 6105, 6736 |
| Bse118I | RCCGGY | 1 cut(s) | 3782 |
| Bse21I | CCTNAGG | 1 cut(s) | 4528 |
| Bse3DI | GCAATG | 1 cut(s) | 3381 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2376, 3765, 4710, 7308 |
| BseBI | CCWGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| BseJI | GATNNNNATC | 4 cut(s) | 2376, 3765, 4710, 7308 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 432, 2115, 4102, 4544, 5002, 5352, 6105, 6736 |
| BseMI | GCAATG | 1 cut(s) | 3381 |
| BseSI | GKGCMC | 4 cut(s) | 1040, 1461, 5610, 6818 |
| BsgI | GTGCAG | 4 cut(s) | 3161, 3434, 4094, 4572 |
| BshFI | GGCC | 8 cut(s) | 42, 632, 1109, 1910, 2108, 2141, 2735, 7167 |
| BsiHKAI | GWGCWC | 6 cut(s) | 396, 1956, 5610, 5763, 6818, 7322 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1326 |
| BsiSI | CCGG | 2 cut(s) | 2492, 3783 |
| BslFI | GGGAC | 6 cut(s) | 366, 535, 843, 1012, 1431, 1600 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 432, 2115, 4102, 4544, 5002, 5352, 6105, 6736 |
| BsmBI | CGTCTC | 2 cut(s) | 264, 1329 |
| BsmFI | GGGAC | 6 cut(s) | 366, 535, 843, 1012, 1431, 1600 |
| BsmI | GAATGC | 1 cut(s) | 1873 |
| BsnI | GGCC | 8 cut(s) | 42, 632, 1109, 1910, 2108, 2141, 2735, 7167 |
| Bso31I | GGTCTC | 4 cut(s) | 235, 4432, 4568, 5303 |
| BsoBI | CYCGRG | 1 cut(s) | 1326 |
| Bsp1286I | GDGCHC | 8 cut(s) | 396, 1040, 1461, 1956, 5610, 5763, 6818, 7322 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3146 |
| BspACI | CCGC | 8 cut(s) | 227, 3281, 3550, 6099, 6737, 7120, 7258, 7377 |
| BspANI | GGCC | 8 cut(s) | 42, 632, 1109, 1910, 2108, 2141, 2735, 7167 |
| BspHI | TCATGA | 3 cut(s) | 2560, 5763, 7195 |
| BspLI | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7237, 7311 |
| BspMAI | CTGCAG | 6 cut(s) | 178, 352, 3012, 4308, 5623, 6756 |
| BspMI | ACCTGC | 1 cut(s) | 181 |
| BspOI | GCTAGC | 2 cut(s) | 2958, 5315 |
| BspQI | GCTCTTC | 1 cut(s) | 5301 |
| BspTI | CTTAAG | 3 cut(s) | 3524, 4387, 6793 |
| BspTNI | GGTCTC | 4 cut(s) | 235, 4432, 4568, 5303 |
| BsrBI | CCGCTC | 1 cut(s) | 3550 |
| BsrDI | GCAATG | 1 cut(s) | 3381 |
| BsrFI | RCCGGY | 1 cut(s) | 3782 |
| BssAI | RCCGGY | 1 cut(s) | 3782 |
| BssSI | CACGAG | 3 cut(s) | 5145, 6657, 6875 |
| BssT1I | CCWWGG | 5 cut(s) | 833, 3393, 4419, 5346, 6372 |
| Bst2BI | CACGAG | 3 cut(s) | 5145, 6657, 6875 |
| Bst2UI | CCWGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| Bst6I | CTCTTC | 7 cut(s) | 496, 973, 1761, 3645, 3767, 5218, 5301 |
| BstAFI | CTTAAG | 3 cut(s) | 3524, 4387, 6793 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 4783, 5068, 5321, 7373 |
| BstH2I | RGCGCY | 2 cut(s) | 2470, 2961 |
| BstHHI | GCGC | 7 cut(s) | 1699, 2187, 2469, 2960, 5695, 6924, 7269 |
| BstNI | CCWGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| BstNSI | RCATGY | 9 cut(s) | 641, 1118, 1706, 2099, 2330, 2885, 3056, 4006, 5997 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 4241, 5571 |
| BstSCI | CCNGG | 7 cut(s) | 93, 3827, 4626, 4996, 5301, 7167, 7312 |
| BstSLI | GKGCMC | 4 cut(s) | 1040, 1461, 5610, 6818 |
| BstV2I | GAAGAC | 6 cut(s) | 3351, 3669, 4086, 4158, 6992, 7167 |
| BstX2I | RGATCY | 9 cut(s) | 2406, 2626, 3170, 3654, 5356, 6064, 6870, 7018, 7309 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 5848, 7306 |
| BstYI | RGATCY | 9 cut(s) | 2406, 2626, 3170, 3654, 5356, 6064, 6870, 7018, 7309 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4528 |
| BsuI | GTATCC | 1 cut(s) | 5848 |
| BsuRI | GGCC | 8 cut(s) | 42, 632, 1109, 1910, 2108, 2141, 2735, 7167 |
| BtgZI | GCGATG | 3 cut(s) | 6419, 6943, 7233 |
| BtrI | CACGTC | 2 cut(s) | 3089, 3139 |
| BtsI | GCAGTG | 8 cut(s) | 91, 396, 873, 1461, 5409, 5616, 5839, 6931 |
| BveI | ACCTGC | 1 cut(s) | 181 |
| CaiI | CAGNNNCTG | 5 cut(s) | 311, 356, 3481, 4814, 7232 |
| CciI | TCATGA | 3 cut(s) | 2560, 5763, 7195 |
| CfoI | GCGC | 7 cut(s) | 1699, 2187, 2469, 2960, 5695, 6924, 7269 |
| Cfr10I | RCCGGY | 1 cut(s) | 3782 |
| Cfr13I | GGNCC | 9 cut(s) | 265, 380, 631, 857, 1108, 1445, 1960, 2191, 6352 |
| CseI | GACGC | 1 cut(s) | 168 |
| DraIII | CACNNNGTG | 1 cut(s) | 6813 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4087 |
| EaeI | YGGCCR | 3 cut(s) | 40, 2733, 7165 |
| Eam1104I | CTCTTC | 7 cut(s) | 496, 973, 1761, 3645, 3767, 5218, 5301 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4087 |
| EarI | CTCTTC | 7 cut(s) | 496, 973, 1761, 3645, 3767, 5218, 5301 |
| EciI | GGCGGA | 1 cut(s) | 3296 |
| Ecl136II | GAGCTC | 2 cut(s) | 1954, 5761 |
| Eco130I | CCWWGG | 5 cut(s) | 833, 3393, 4419, 5346, 6372 |
| Eco147I | AGGCCT | 2 cut(s) | 1910, 2141 |
| Eco24I | GRGCYC | 2 cut(s) | 1956, 5763 |
| Eco31I | GGTCTC | 4 cut(s) | 235, 4432, 4568, 5303 |
| Eco32I | GATATC | 2 cut(s) | 3871, 4712 |
| Eco47I | GGWCC | 7 cut(s) | 265, 380, 857, 1445, 1960, 2191, 6352 |
| Eco47III | AGCGCT | 1 cut(s) | 2959 |
| Eco53kI | GAGCTC | 2 cut(s) | 1954, 5761 |
| Eco81I | CCTNAGG | 1 cut(s) | 4528 |
| Eco88I | CYCGRG | 1 cut(s) | 1326 |
| EcoICRI | GAGCTC | 2 cut(s) | 1954, 5761 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1960, 2191 |
| EcoRI | GAATTC | 6 cut(s) | 343, 598, 1408, 1663, 1849, 2476 |
| EcoRII | CCWGG | 7 cut(s) | 93, 3827, 4626, 4996, 5301, 7167, 7312 |
| EcoRV | GATATC | 2 cut(s) | 3871, 4712 |
| EcoT14I | CCWWGG | 5 cut(s) | 833, 3393, 4419, 5346, 6372 |
| EcoT22I | ATGCAT | 2 cut(s) | 4350, 6579 |
| EcoT38I | GRGCYC | 2 cut(s) | 1956, 5763 |
| ErhI | CCWWGG | 5 cut(s) | 833, 3393, 4419, 5346, 6372 |
| Esp3I | CGTCTC | 2 cut(s) | 264, 1329 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3279, 3311, 4770, 4802 |
| FaqI | GGGAC | 6 cut(s) | 366, 535, 843, 1012, 1431, 1600 |
| FauI | CCCGC | 3 cut(s) | 3543, 6106, 7113 |
| FbaI | TGATCA | 1 cut(s) | 4249 |
| FblI | GTMKAC | 3 cut(s) | 1416, 2798, 4988 |
| FriOI | GRGCYC | 2 cut(s) | 1956, 5763 |
| FspI | TGCGCA | 2 cut(s) | 6923, 7268 |
| GlaI | GCGC | 7 cut(s) | 1698, 2186, 2468, 2959, 5694, 6923, 7268 |
| GsuI | CTGGAG | 8 cut(s) | 791, 1080, 1268, 1668, 3218, 4079, 4253, 5285 |
| HaeII | RGCGCY | 2 cut(s) | 2470, 2961 |
| HaeIII | GGCC | 8 cut(s) | 42, 632, 1109, 1910, 2108, 2141, 2735, 7167 |
| HapII | CCGG | 2 cut(s) | 2492, 3783 |
| HgaI | GACGC | 1 cut(s) | 168 |
| HhaI | GCGC | 7 cut(s) | 1699, 2187, 2469, 2960, 5695, 6924, 7269 |
| Hin6I | GCGC | 7 cut(s) | 1697, 2185, 2467, 2958, 5693, 6922, 7267 |
| HinP1I | GCGC | 7 cut(s) | 1697, 2185, 2467, 2958, 5693, 6922, 7267 |
| HincII | GTYRAC | 8 cut(s) | 316, 1381, 2083, 2314, 2539, 2926, 4111, 4903 |
| HindII | GTYRAC | 8 cut(s) | 316, 1381, 2083, 2314, 2539, 2926, 4111, 4903 |
| HpaI | GTTAAC | 2 cut(s) | 2926, 4111 |
| HpaII | CCGG | 2 cut(s) | 2492, 3783 |
| Hpy99I | CGWCG | 1 cut(s) | 4942 |
| HpyCH4IV | ACGT | 6 cut(s) | 2073, 2304, 3088, 3138, 4918, 6273 |
| HpySE526I | ACGT | 6 cut(s) | 2073, 2304, 3088, 3138, 4918, 6273 |
| HspAI | GCGC | 7 cut(s) | 1697, 2185, 2467, 2958, 5693, 6922, 7267 |
| Ksp22I | TGATCA | 1 cut(s) | 4249 |
| KspAI | GTTAAC | 2 cut(s) | 2926, 4111 |
| LguI | GCTCTTC | 1 cut(s) | 5301 |
| LmnI | GCTCC | 6 cut(s) | 3184, 4027, 6298, 6445, 6538, 7317 |
| MaeII | ACGT | 6 cut(s) | 2073, 2304, 3088, 3138, 4918, 6273 |
| MbiI | CCGCTC | 1 cut(s) | 3550 |
| MfeI | CAATTG | 6 cut(s) | 234, 2363, 3065, 4045, 5853, 7293 |
| MflI | RGATCY | 9 cut(s) | 2406, 2626, 3170, 3654, 5356, 6064, 6870, 7018, 7309 |
| MhlI | GDGCHC | 8 cut(s) | 396, 1040, 1461, 1956, 5610, 5763, 6818, 7322 |
| MlsI | TGGCCA | 1 cut(s) | 2735 |
| MluNI | TGGCCA | 1 cut(s) | 2735 |
| MmeI | TCCRAC | 7 cut(s) | 2400, 3915, 4576, 4641, 5145, 6040, 6378 |
| Mox20I | TGGCCA | 1 cut(s) | 2735 |
| Mph1103I | ATGCAT | 2 cut(s) | 4350, 6579 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2427, 3291, 5486 |
| MscI | TGGCCA | 1 cut(s) | 2735 |
| MslI | CAYNNNNRTG | 9 cut(s) | 1902, 2100, 2331, 3243, 4353, 4548, 5706, 5970, 7304 |
| Msp20I | TGGCCA | 1 cut(s) | 2735 |
| MspA1I | CMGCKG | 4 cut(s) | 2444, 4556, 5624, 6197 |
| MspCI | CTTAAG | 3 cut(s) | 3524, 4387, 6793 |
| MspI | CCGG | 2 cut(s) | 2492, 3783 |
| MspR9I | CCNGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| MunI | CAATTG | 6 cut(s) | 234, 2363, 3065, 4045, 5853, 7293 |
| Mva1269I | GAATGC | 1 cut(s) | 1873 |
| MvaI | CCWGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| NheI | GCTAGC | 2 cut(s) | 2954, 5311 |
| NlaIV | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7237, 7311 |
| NmeAIII | GCCGAG | 2 cut(s) | 365, 842 |
| NsbI | TGCGCA | 2 cut(s) | 6923, 7268 |
| NsiI | ATGCAT | 2 cut(s) | 4350, 6579 |
| NspI | RCATGY | 9 cut(s) | 641, 1118, 1706, 2099, 2330, 2885, 3056, 4006, 5997 |
| PaeI | GCATGC | 1 cut(s) | 5997 |
| PagI | TCATGA | 3 cut(s) | 2560, 5763, 7195 |
| PceI | AGGCCT | 2 cut(s) | 1910, 2141 |
| PciI | ACATGT | 3 cut(s) | 2095, 2326, 2881 |
| PciSI | GCTCTTC | 1 cut(s) | 5301 |
| PctI | GAATGC | 1 cut(s) | 1873 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2427, 3291, 5486 |
| PfoI | TCCNGGA | 2 cut(s) | 3827, 5301 |
| PpuMI | RGGWCCY | 2 cut(s) | 1960, 2191 |
| PscI | ACATGT | 3 cut(s) | 2095, 2326, 2881 |
| PshAI | GACNNNNGTC | 2 cut(s) | 4241, 5571 |
| PshBI | ATTAAT | 3 cut(s) | 732, 1209, 1797 |
| Psp124BI | GAGCTC | 2 cut(s) | 1956, 5763 |
| Psp1406I | AACGTT | 1 cut(s) | 4918 |
| Psp5II | RGGWCCY | 2 cut(s) | 1960, 2191 |
| Psp6I | CCWGG | 7 cut(s) | 93, 3827, 4626, 4996, 5301, 7167, 7312 |
| PspGI | CCWGG | 7 cut(s) | 93, 3827, 4626, 4996, 5301, 7167, 7312 |
| PspN4I | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7237, 7311 |
| PspPI | GGNCC | 9 cut(s) | 265, 380, 631, 857, 1108, 1445, 1960, 2191, 6352 |
| PspPPI | RGGWCCY | 2 cut(s) | 1960, 2191 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 6408, 6440 |
| PstI | CTGCAG | 6 cut(s) | 178, 352, 3012, 4308, 5623, 6756 |
| PstNI | CAGNNNCTG | 5 cut(s) | 311, 356, 3481, 4814, 7232 |
| PsuI | RGATCY | 9 cut(s) | 2406, 2626, 3170, 3654, 5356, 6064, 6870, 7018, 7309 |
| PvuII | CAGCTG | 4 cut(s) | 2444, 4556, 5624, 6197 |
| RseI | CAYNNNNRTG | 9 cut(s) | 1902, 2100, 2331, 3243, 4353, 4548, 5706, 5970, 7304 |
| SacI | GAGCTC | 2 cut(s) | 1956, 5763 |
| SapI | GCTCTTC | 1 cut(s) | 5301 |
| Sau96I | GGNCC | 9 cut(s) | 265, 380, 631, 857, 1108, 1445, 1960, 2191, 6352 |
| ScaI | AGTACT | 4 cut(s) | 517, 994, 1582, 6978 |
| ScrFI | CCNGG | 7 cut(s) | 95, 3829, 4628, 4998, 5303, 7169, 7314 |
| SduI | GDGCHC | 8 cut(s) | 396, 1040, 1461, 1956, 5610, 5763, 6818, 7322 |
| SinI | GGWCC | 7 cut(s) | 265, 380, 857, 1445, 1960, 2191, 6352 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 1902, 2100, 2331, 3243, 4353, 4548, 5706, 5970, 7304 |
| SpeI | ACTAGT | 5 cut(s) | 362, 1427, 2345, 5999, 7322 |
| SphI | GCATGC | 1 cut(s) | 5997 |
| SseBI | AGGCCT | 2 cut(s) | 1910, 2141 |
| SsiI | CCGC | 8 cut(s) | 227, 3281, 3550, 6099, 6737, 7120, 7258, 7377 |
| SspI | AATATT | 5 cut(s) | 730, 1207, 1717, 1795, 6904 |
| SstI | GAGCTC | 2 cut(s) | 1956, 5763 |
| StuI | AGGCCT | 2 cut(s) | 1910, 2141 |
| StyD4I | CCNGG | 7 cut(s) | 93, 3827, 4626, 4996, 5301, 7167, 7312 |
| StyI | CCWWGG | 5 cut(s) | 833, 3393, 4419, 5346, 6372 |
| TaiI | ACGT | 6 cut(s) | 2076, 2307, 3091, 3141, 4921, 6276 |
| TaqI | TCGA | 7 cut(s) | 648, 1125, 2021, 2252, 4601, 5724, 6910 |
| TauI | GCSGC | 1 cut(s) | 7379 |
| TspGWI | ACGGA | 8 cut(s) | 257, 288, 658, 1135, 1353, 1723, 5783, 6518 |
| Vha464I | CTTAAG | 3 cut(s) | 3524, 4387, 6793 |
| VneI | GTGCAC | 2 cut(s) | 5606, 6814 |
| VpaK11BI | GGWCC | 7 cut(s) | 265, 380, 857, 1445, 1960, 2191, 6352 |
| VspI | ATTAAT | 3 cut(s) | 732, 1209, 1797 |
| XbaI | TCTAGA | 2 cut(s) | 2848, 4714 |
| XceI | RCATGY | 9 cut(s) | 641, 1118, 1706, 2099, 2330, 2885, 3056, 4006, 5997 |
| XmiI | GTMKAC | 3 cut(s) | 1416, 2798, 4988 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2427, 3291, 5486 |
| ZrmI | AGTACT | 4 cut(s) | 517, 994, 1582, 6978 |
| Zsp2I | ATGCAT | 2 cut(s) | 4350, 6579 |