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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3140 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2611, 7307 |
| AatII | GACGTC | 1 cut(s) | 8550 |
| Acc16I | TGCGCA | 2 cut(s) | 7284, 8858 |
| Acc36I | ACCTGC | 3 cut(s) | 306, 2023, 4720 |
| Acc65I | GGTACC | 1 cut(s) | 73 |
| AccB1I | GGYRCC | 2 cut(s) | 73, 6134 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1171 |
| AccI | GTMKAC | 3 cut(s) | 3652, 4385, 6572 |
| AccII | CGCG | 3 cut(s) | 231, 3356, 6783 |
| AclI | AACGTT | 1 cut(s) | 6502 |
| AcoI | YGGCCR | 7 cut(s) | 1023, 1219, 4320, 5313, 7098, 8047, 8755 |
| AcyI | GRCGYC | 1 cut(s) | 8547 |
| AdeI | CACNNNGTG | 2 cut(s) | 1171, 8403 |
| AfeI | AGCGCT | 1 cut(s) | 4546 |
| AflII | CTTAAG | 5 cut(s) | 2108, 2743, 5114, 5977, 8383 |
| AflIII | ACRYGT | 4 cut(s) | 1954, 3913, 4468, 5341 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 9093 |
| AhlI | ACTAGT | 4 cut(s) | 1397, 4687, 7589, 8912 |
| Alw44I | GTGCAC | 3 cut(s) | 600, 7193, 8404 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1391, 3628, 5071 |
| Ama87I | CYCGRG | 1 cut(s) | 9090 |
| Aor51HI | AGCGCT | 1 cut(s) | 4546 |
| ApaLI | GTGCAC | 3 cut(s) | 600, 7193, 8404 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 777, 809, 5102, 5134, 5208, 5240 |
| AseI | ATTAAT | 1 cut(s) | 5304 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 501, 1902, 2211, 4014, 7073, 9059 |
| Asp718I | GGTACC | 1 cut(s) | 73 |
| AspLEI | GCGC | 9 cut(s) | 899, 3358, 4056, 4547, 6783, 6785, 7285, 8101, 8859 |
| AspS9I | GGNCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| AsuII | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| AsuNHI | GCTAGC | 1 cut(s) | 4541 |
| AvaI | CYCGRG | 1 cut(s) | 9090 |
| AvaII | GGWCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| BaeGI | GKGCMC | 4 cut(s) | 604, 2515, 7197, 8408 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 65, 98 |
| BalI | TGGCCA | 4 cut(s) | 1025, 4322, 5315, 8049 |
| BamHI | GGATCC | 2 cut(s) | 336, 8899 |
| BanI | GGYRCC | 2 cut(s) | 73, 6134 |
| BanII | GRGCYC | 6 cut(s) | 2042, 2430, 3302, 3774, 7353, 8133 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6181, 6213 |
| BauI | CACGAG | 3 cut(s) | 6729, 8247, 8465 |
| BbsI | GAAGAC | 8 cut(s) | 104, 411, 1794, 4941, 5259, 5748, 8582, 8757 |
| BbvCI | CCTCAGC | 4 cut(s) | 156, 417, 1698, 6948 |
| BceAI | ACGGC | 5 cut(s) | 606, 1182, 1206, 4386, 8770 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3486, 3520, 8751, 8785 |
| BciVI | GTATCC | 4 cut(s) | 571, 1108, 3628, 7438 |
| BclI | TGATCA | 2 cut(s) | 1945, 5839 |
| BcuI | ACTAGT | 4 cut(s) | 1397, 4687, 7589, 8912 |
| BfoI | RGCGCY | 2 cut(s) | 4057, 4548 |
| BfrI | CTTAAG | 5 cut(s) | 2108, 2743, 5114, 5977, 8383 |
| BfuAI | ACCTGC | 3 cut(s) | 306, 2023, 4720 |
| BfuI | GTATCC | 4 cut(s) | 571, 1108, 3628, 7438 |
| BglII | AGATCT | 7 cut(s) | 199, 2233, 4213, 5244, 5609, 6015, 7654 |
| BlpI | GCTNAGC | 1 cut(s) | 3443 |
| BmcAI | AGTACT | 2 cut(s) | 1459, 8568 |
| Bme18I | GGWCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 9093 |
| BmeT110I | CYCGRG | 1 cut(s) | 9090 |
| BmgT120I | GGNCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| BmrI | ACTGGG | 1 cut(s) | 3761 |
| BmtI | GCTAGC | 1 cut(s) | 4545 |
| BmuI | ACTGGG | 1 cut(s) | 3761 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1398, 7158 |
| BpiI | GAAGAC | 8 cut(s) | 104, 411, 1794, 4941, 5259, 5748, 8582, 8757 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1104, 1136, 7700, 7732, 9073, 9105 |
| BpmI | CTGGAG | 2 cut(s) | 628, 7160 |
| Bpu10I | CCTNAGC | 8 cut(s) | 156, 417, 1476, 1698, 3474, 3773, 6948, 7239 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3443 |
| Bpu14I | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| Bsa29I | ATCGAT | 1 cut(s) | 5634 |
| BsaBI | GATNNNNATC | 5 cut(s) | 1944, 3963, 5355, 6294, 8898 |
| BsaHI | GRCGYC | 1 cut(s) | 8547 |
| BsaI | GGTCTC | 6 cut(s) | 223, 708, 2585, 6152, 6887, 7109 |
| BsaWI | WCCGGW | 1 cut(s) | 4078 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2912, 2942, 6374, 6404, 7970, 8000, 8899, 8929 |
| Bse118I | RCCGGY | 2 cut(s) | 5372, 7100 |
| Bse3DI | GCAATG | 8 cut(s) | 97, 968, 1613, 1692, 2135, 3437, 4971, 8832 |
| Bse8I | GATNNNNATC | 5 cut(s) | 1944, 3963, 5355, 6294, 8898 |
| BseCI | ATCGAT | 1 cut(s) | 5634 |
| BseJI | GATNNNNATC | 5 cut(s) | 1944, 3963, 5355, 6294, 8898 |
| BseMI | GCAATG | 8 cut(s) | 97, 968, 1613, 1692, 2135, 3437, 4971, 8832 |
| BsePI | GCGCGC | 1 cut(s) | 6781 |
| BseSI | GKGCMC | 4 cut(s) | 604, 2515, 7197, 8408 |
| BseYI | CCCAGC | 2 cut(s) | 2140, 3164 |
| BsgI | GTGCAG | 7 cut(s) | 284, 1863, 2407, 4748, 5024, 5684, 7074 |
| Bsh1236I | CGCG | 3 cut(s) | 231, 3356, 6783 |
| Bsh1285I | CGRYCG | 1 cut(s) | 229 |
| BshNI | GGYRCC | 2 cut(s) | 73, 6134 |
| BshVI | ATCGAT | 1 cut(s) | 5634 |
| BsiEI | CGRYCG | 1 cut(s) | 229 |
| BsiHKCI | CYCGRG | 1 cut(s) | 9090 |
| BsiSI | CCGG | 4 cut(s) | 824, 4079, 5373, 7101 |
| BslFI | GGGAC | 4 cut(s) | 2158, 2617, 8534, 9081 |
| BsmBI | CGTCTC | 2 cut(s) | 706, 1341 |
| BsmFI | GGGAC | 4 cut(s) | 2158, 2617, 8534, 9081 |
| BsmI | GAATGC | 1 cut(s) | 3497 |
| Bso31I | GGTCTC | 6 cut(s) | 223, 708, 2585, 6152, 6887, 7109 |
| BsoBI | CYCGRG | 1 cut(s) | 9090 |
| Bsp119I | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| Bsp1407I | TGTACA | 3 cut(s) | 3403, 5431, 8990 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3443 |
| Bsp19I | CCATGG | 3 cut(s) | 269, 752, 1273 |
| BspDI | ATCGAT | 1 cut(s) | 5634 |
| BspFNI | CGCG | 3 cut(s) | 231, 3356, 6783 |
| BspHI | TCATGA | 5 cut(s) | 2938, 3193, 4147, 7353, 8785 |
| BspMAI | CTGCAG | 5 cut(s) | 1387, 4599, 5688, 5898, 7210 |
| BspMI | ACCTGC | 3 cut(s) | 306, 2023, 4720 |
| BspOI | GCTAGC | 1 cut(s) | 4545 |
| BspQI | GCTCTTC | 5 cut(s) | 492, 1187, 2367, 3519, 6885 |
| BspT104I | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| BspT107I | GGYRCC | 2 cut(s) | 73, 6134 |
| BspTI | CTTAAG | 5 cut(s) | 2108, 2743, 5114, 5977, 8383 |
| BspTNI | GGTCTC | 6 cut(s) | 223, 708, 2585, 6152, 6887, 7109 |
| BsrDI | GCAATG | 8 cut(s) | 97, 968, 1613, 1692, 2135, 3437, 4971, 8832 |
| BsrFI | RCCGGY | 2 cut(s) | 5372, 7100 |
| BsrGI | TGTACA | 3 cut(s) | 3403, 5431, 8990 |
| BssAI | RCCGGY | 2 cut(s) | 5372, 7100 |
| BssHII | GCGCGC | 1 cut(s) | 6781 |
| BssNI | GRCGYC | 1 cut(s) | 8547 |
| BssSI | CACGAG | 3 cut(s) | 6729, 8247, 8465 |
| Bst2BI | CACGAG | 3 cut(s) | 6729, 8247, 8465 |
| BstACI | GRCGYC | 1 cut(s) | 8547 |
| BstAFI | CTTAAG | 5 cut(s) | 2108, 2743, 5114, 5977, 8383 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 6060, 6367, 6652, 6905 |
| BstAUI | TGTACA | 3 cut(s) | 3403, 5431, 8990 |
| BstBI | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| BstDSI | CCRYGG | 4 cut(s) | 269, 752, 1165, 1273 |
| BstEII | GGTNACC | 1 cut(s) | 8395 |
| BstFNI | CGCG | 3 cut(s) | 231, 3356, 6783 |
| BstH2I | RGCGCY | 2 cut(s) | 4057, 4548 |
| BstHHI | GCGC | 9 cut(s) | 899, 3358, 4056, 4547, 6783, 6785, 7285, 8101, 8859 |
| BstMCI | CGRYCG | 1 cut(s) | 229 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1398, 7158 |
| BstPI | GGTNACC | 1 cut(s) | 8395 |
| BstSLI | GKGCMC | 4 cut(s) | 604, 2515, 7197, 8408 |
| BstUI | CGCG | 3 cut(s) | 231, 3356, 6783 |
| BstV2I | GAAGAC | 8 cut(s) | 104, 411, 1794, 4941, 5259, 5748, 8582, 8757 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 7438, 8896 |
| Bsu15I | ATCGAT | 1 cut(s) | 5634 |
| BsuI | GTATCC | 4 cut(s) | 571, 1108, 3628, 7438 |
| BsuTUI | ATCGAT | 1 cut(s) | 5634 |
| BtgI | CCRYGG | 4 cut(s) | 269, 752, 1165, 1273 |
| BtgZI | GCGATG | 3 cut(s) | 246, 4308, 8009 |
| BtsI | GCAGTG | 6 cut(s) | 1270, 1851, 5727, 6549, 7203, 7429 |
| BveI | ACCTGC | 3 cut(s) | 306, 2023, 4720 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1391, 3628, 5071 |
| CciI | TCATGA | 5 cut(s) | 2938, 3193, 4147, 7353, 8785 |
| CfoI | GCGC | 9 cut(s) | 899, 3358, 4056, 4547, 6783, 6785, 7285, 8101, 8859 |
| Cfr10I | RCCGGY | 2 cut(s) | 5372, 7100 |
| Cfr13I | GGNCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| ClaI | ATCGAT | 1 cut(s) | 5634 |
| CseI | GACGC | 1 cut(s) | 1764 |
| CsiI | ACCWGGT | 2 cut(s) | 2691, 8399 |
| DraI | TTTAAA | 2 cut(s) | 6234, 6975 |
| DraIII | CACNNNGTG | 2 cut(s) | 1171, 8403 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2611, 7307 |
| DriI | GACNNNNNGTC | 1 cut(s) | 9093 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2611, 7307 |
| EaeI | YGGCCR | 7 cut(s) | 1023, 1219, 4320, 5313, 7098, 8047, 8755 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 9093 |
| EciI | GGCGGA | 1 cut(s) | 4886 |
| Ecl136II | GAGCTC | 5 cut(s) | 2040, 2428, 3772, 7351, 8131 |
| Eco147I | AGGCCT | 4 cut(s) | 136, 588, 1768, 3728 |
| Eco24I | GRGCYC | 6 cut(s) | 2042, 2430, 3302, 3774, 7353, 8133 |
| Eco31I | GGTCTC | 6 cut(s) | 223, 708, 2585, 6152, 6887, 7109 |
| Eco32I | GATATC | 5 cut(s) | 372, 555, 1762, 5461, 6296 |
| Eco47I | GGWCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| Eco47III | AGCGCT | 1 cut(s) | 4546 |
| Eco53kI | GAGCTC | 5 cut(s) | 2040, 2428, 3772, 7351, 8131 |
| Eco88I | CYCGRG | 1 cut(s) | 9090 |
| Eco91I | GGTNACC | 1 cut(s) | 8395 |
| EcoICRI | GAGCTC | 5 cut(s) | 2040, 2428, 3772, 7351, 8131 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2012, 3778, 9095 |
| EcoO65I | GGTNACC | 1 cut(s) | 8395 |
| EcoRI | GAATTC | 5 cut(s) | 680, 725, 1540, 4063, 7261 |
| EcoRV | GATATC | 5 cut(s) | 372, 555, 1762, 5461, 6296 |
| EcoT22I | ATGCAT | 1 cut(s) | 5940 |
| EcoT38I | GRGCYC | 6 cut(s) | 2042, 2430, 3302, 3774, 7353, 8133 |
| Esp3I | CGTCTC | 2 cut(s) | 706, 1341 |
| FaqI | GGGAC | 4 cut(s) | 2158, 2617, 8534, 9081 |
| FauI | CCCGC | 3 cut(s) | 2741, 7696, 9107 |
| FauNDI | CATATG | 2 cut(s) | 1005, 1033 |
| FbaI | TGATCA | 2 cut(s) | 1945, 5839 |
| FblI | GTMKAC | 3 cut(s) | 3652, 4385, 6572 |
| FriOI | GRGCYC | 6 cut(s) | 2042, 2430, 3302, 3774, 7353, 8133 |
| FspAI | RTGCGCAY | 1 cut(s) | 7284 |
| FspI | TGCGCA | 2 cut(s) | 7284, 8858 |
| GlaI | GCGC | 9 cut(s) | 898, 3357, 4055, 4546, 6782, 6784, 7284, 8100, 8858 |
| GsaI | CCCAGC | 2 cut(s) | 2144, 3168 |
| GsuI | CTGGAG | 2 cut(s) | 628, 7160 |
| HaeII | RGCGCY | 2 cut(s) | 4057, 4548 |
| HapII | CCGG | 4 cut(s) | 824, 4079, 5373, 7101 |
| HgaI | GACGC | 1 cut(s) | 1764 |
| HhaI | GCGC | 9 cut(s) | 899, 3358, 4056, 4547, 6783, 6785, 7285, 8101, 8859 |
| Hin1I | GRCGYC | 1 cut(s) | 8547 |
| Hin6I | GCGC | 9 cut(s) | 897, 3356, 4054, 4545, 6781, 6783, 7283, 8099, 8857 |
| HinP1I | GCGC | 9 cut(s) | 897, 3356, 4054, 4545, 6781, 6783, 7283, 8099, 8857 |
| HincII | GTYRAC | 5 cut(s) | 2538, 3025, 4513, 5505, 5701 |
| HindII | GTYRAC | 5 cut(s) | 2538, 3025, 4513, 5505, 5701 |
| HpaI | GTTAAC | 3 cut(s) | 3025, 4513, 5701 |
| HpaII | CCGG | 4 cut(s) | 824, 4079, 5373, 7101 |
| HpyCH4IV | ACGT | 5 cut(s) | 2998, 3891, 6502, 7863, 8547 |
| HpySE526I | ACGT | 5 cut(s) | 2998, 3891, 6502, 7863, 8547 |
| Hsp92I | GRCGYC | 1 cut(s) | 8547 |
| HspAI | GCGC | 9 cut(s) | 897, 3356, 4054, 4545, 6781, 6783, 7283, 8099, 8857 |
| KflI | GGGWCCC | 1 cut(s) | 9095 |
| KpnI | GGTACC | 1 cut(s) | 77 |
| Ksp22I | TGATCA | 2 cut(s) | 1945, 5839 |
| KspAI | GTTAAC | 3 cut(s) | 3025, 4513, 5701 |
| LguI | GCTCTTC | 5 cut(s) | 492, 1187, 2367, 3519, 6885 |
| MabI | ACCWGGT | 2 cut(s) | 2691, 8399 |
| MaeII | ACGT | 5 cut(s) | 2998, 3891, 6502, 7863, 8547 |
| MfeI | CAATTG | 7 cut(s) | 375, 1137, 2484, 3938, 7443, 8351, 8883 |
| MlsI | TGGCCA | 4 cut(s) | 1025, 4322, 5315, 8049 |
| MluNI | TGGCCA | 4 cut(s) | 1025, 4322, 5315, 8049 |
| MmeI | TCCRAC | 7 cut(s) | 696, 996, 1912, 3987, 5505, 7630, 7968 |
| Mox20I | TGGCCA | 4 cut(s) | 1025, 4322, 5315, 8049 |
| Mph1103I | ATGCAT | 1 cut(s) | 5940 |
| MroXI | GAANNNNTTC | 6 cut(s) | 501, 1902, 2211, 4014, 7073, 9059 |
| MscI | TGGCCA | 4 cut(s) | 1025, 4322, 5315, 8049 |
| Msp20I | TGGCCA | 4 cut(s) | 1025, 4322, 5315, 8049 |
| MspA1I | CMGCKG | 7 cut(s) | 1868, 2618, 5867, 6140, 7211, 7598, 7787 |
| MspCI | CTTAAG | 5 cut(s) | 2108, 2743, 5114, 5977, 8383 |
| MspI | CCGG | 4 cut(s) | 824, 4079, 5373, 7101 |
| MunI | CAATTG | 7 cut(s) | 375, 1137, 2484, 3938, 7443, 8351, 8883 |
| Mva1269I | GAATGC | 1 cut(s) | 3497 |
| MvnI | CGCG | 3 cut(s) | 231, 3356, 6783 |
| NcoI | CCATGG | 3 cut(s) | 269, 752, 1273 |
| NdeI | CATATG | 2 cut(s) | 1005, 1033 |
| NheI | GCTAGC | 1 cut(s) | 4541 |
| NsbI | TGCGCA | 2 cut(s) | 7284, 8858 |
| NsiI | ATGCAT | 1 cut(s) | 5940 |
| NspV | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| PaeI | GCATGC | 3 cut(s) | 268, 1316, 7587 |
| PagI | TCATGA | 5 cut(s) | 2938, 3193, 4147, 7353, 8785 |
| PauI | GCGCGC | 1 cut(s) | 6781 |
| PceI | AGGCCT | 4 cut(s) | 136, 588, 1768, 3728 |
| PciI | ACATGT | 4 cut(s) | 1954, 3913, 4468, 5341 |
| PciSI | GCTCTTC | 5 cut(s) | 492, 1187, 2367, 3519, 6885 |
| PctI | GAATGC | 1 cut(s) | 3497 |
| PdmI | GAANNNNTTC | 6 cut(s) | 501, 1902, 2211, 4014, 7073, 9059 |
| PflFI | GACNNNGTC | 1 cut(s) | 9011 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1171 |
| PfoI | TCCNGGA | 3 cut(s) | 27, 5417, 6210 |
| PpuMI | RGGWCCY | 3 cut(s) | 2012, 3778, 9095 |
| PscI | ACATGT | 4 cut(s) | 1954, 3913, 4468, 5341 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1398, 7158 |
| PshBI | ATTAAT | 1 cut(s) | 5304 |
| PsiI | TTATAA | 1 cut(s) | 3140 |
| Psp124BI | GAGCTC | 5 cut(s) | 2042, 2430, 3774, 7353, 8133 |
| Psp1406I | AACGTT | 1 cut(s) | 6502 |
| Psp5II | RGGWCCY | 3 cut(s) | 2012, 3778, 9095 |
| PspEI | GGTNACC | 1 cut(s) | 8395 |
| PspFI | CCCAGC | 2 cut(s) | 2140, 3164 |
| PspPI | GGNCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| PspPPI | RGGWCCY | 3 cut(s) | 2012, 3778, 9095 |
| PstI | CTGCAG | 5 cut(s) | 1387, 4599, 5688, 5898, 7210 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1391, 3628, 5071 |
| PsyI | GACNNNGTC | 1 cut(s) | 9011 |
| PteI | GCGCGC | 1 cut(s) | 6781 |
| PvuII | CAGCTG | 5 cut(s) | 1868, 5867, 7211, 7598, 7787 |
| SacI | GAGCTC | 5 cut(s) | 2042, 2430, 3774, 7353, 8133 |
| SapI | GCTCTTC | 5 cut(s) | 492, 1187, 2367, 3519, 6885 |
| Sau96I | GGNCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| ScaI | AGTACT | 2 cut(s) | 1459, 8568 |
| SexAI | ACCWGGT | 2 cut(s) | 2691, 8399 |
| SfuI | TTCGAA | 3 cut(s) | 729, 4705, 8922 |
| SinI | GGWCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| SpeI | ACTAGT | 4 cut(s) | 1397, 4687, 7589, 8912 |
| SphI | GCATGC | 3 cut(s) | 268, 1316, 7587 |
| SseBI | AGGCCT | 4 cut(s) | 136, 588, 1768, 3728 |
| SspI | AATATT | 3 cut(s) | 1633, 3740, 8494 |
| SstI | GAGCTC | 5 cut(s) | 2042, 2430, 3774, 7353, 8133 |
| StuI | AGGCCT | 4 cut(s) | 136, 588, 1768, 3728 |
| TaiI | ACGT | 5 cut(s) | 3001, 3894, 6505, 7866, 8550 |
| TauI | GCSGC | 2 cut(s) | 6140, 8624 |
| TspGWI | ACGGA | 8 cut(s) | 1182, 1334, 1365, 1907, 2087, 2315, 2336, 7373 |
| Tth111I | GACNNNGTC | 1 cut(s) | 9011 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1171 |
| Vha464I | CTTAAG | 5 cut(s) | 2108, 2743, 5114, 5977, 8383 |
| VneI | GTGCAC | 3 cut(s) | 600, 7193, 8404 |
| VpaK11BI | GGWCC | 9 cut(s) | 842, 1088, 1342, 1811, 2012, 2145, 3778, 8509, 9095 |
| VspI | ATTAAT | 1 cut(s) | 5304 |
| XbaI | TCTAGA | 3 cut(s) | 2477, 4435, 6298 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 8416 |
| XmiI | GTMKAC | 3 cut(s) | 3652, 4385, 6572 |
| XmnI | GAANNNNTTC | 6 cut(s) | 501, 1902, 2211, 4014, 7073, 9059 |
| ZraI | GACGTC | 1 cut(s) | 8548 |
| ZrmI | AGTACT | 2 cut(s) | 1459, 8568 |
| Zsp2I | ATGCAT | 1 cut(s) | 5940 |