Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001092

Physical Location & Seq

Genomic Coordinates Reverse (-)

49088812 .. 49091062

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAAAGCGGATGAGAAGCTGAGTTGGGGTTTGGTGTCACCGTCCGGGGTGGCCTATCATTTCGGTACAAGTGGACTTTCCGTTGCGGTGGCTACCGCAGTAACTCACCCTTTAGATGTGCTCAAAGTTAGGCTGCAAATGCAACTTGTTGGGCAGAAAGGTCCTCTAACTGGAATGGGACGATTGTTTCTTCAAGTTCTTAAGAATGAAGGACCAAGATTTTTGTATCTGGGATTGACGCCTGCATTGACAAGGTCTGTTCTTTATGGAGGTCTCCGTTTAGGCTTGTATGAACCCTCAAAGTATGCCTGCAATTGGGCGTTTGGGTCCAACAATGTTTTTGTTAAGATTGGATCCGCGGGATTTGGTGGTGCAATCGCAACTGCACTGACGAATCCAGTTGAGGTTTTGAAGGTGCGACTACAGATGAATCCGAACTTGAGGAAAGGTGCAGCTGGAGAAGTGCGTGCAATCATTGGTGAAGAGGGAGTGAAAGCTCTTTGGAAGGGTGTTGGCCCTGCTATGGCTAGAGCTGCTACATTGACTGCATCACAACTTGCAACCTATGACGAAACCAAGCGGATGTTGATTAGGTGGACACCACTTGAAGAAGGATTCCATCTACATCTCACCTCAAGCACAGTTGCAGGCATGGTGAGTACCCTCCTGACAGCACCTGTAGACATGATAAAAACCCGTCTCATGCTGCAACAGGAATCTGAAAGAGTTGGAAGCTATAGAAATGGATTTCATTGTGCATATCAGGTCCTGCGTACAGAAGGCCCAAGAGGTCTTTACAAGGGGAGCCTTGCAATGTTTGCAAGATTGGGTCCACAAACGACAATTACCTTTGTAGTCTGTGAGAAGCTACGTGAGCTTGCTGGATTGAAAGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.31

Weight (kDa)

9.91

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	16 - 101	1.2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	112 - 197	2.3e-19	Mitochondrial carrier protein
Mito_carr	PF00153	206 - 293	7.6e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31570 AT4G31570 AT4G31570 AT4G31570 AT4G31570 AT4G31570 AT4G31570
fragaria_vesca	FvH4_2g36740 FvH4_2g36740 FvH4_2g36740 FvH4_2g36740 FvH4_6g26670
malus_domestica	MD08G1126800.v1.1 MD15G1106500.v1.1
prunus_persica	Prupe.1G458700_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1 Prupe.1G459000_v2.0.a1
pyrus_communis	pycom08g10590 pycom15g09720
rosa_chinensis	RchiOBHm_Chr6g0305121 RchiOBHm_Chr6g0305291
rosa_laevigata	RLG00000010902 RLG00000010917
rosa_multiflora	Rmu_sc0000061.1_g000021 Rmu_sc0008509.1_g000028 Rmu_sc0020469.1_g000001 Rmu_sc0022119.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162950 Rroxscaffold_7G00162960 Rroxscaffold_7G00163130
rosa_rugosa	Rorug06G0337400 Rorug06G0337500 Rorug06G0337600 Rorug06G0337700 Rorug06G0337800 Rorug06G0339400
rosa_samantha	Rh6AG449300 Rh6AG450900 Rh6BG450400 Rh6BG451900 Rh6CG462900 Rh6CG465200 Rh6DG449700 Rh6DG449800 Rh6DG449900 Rh6DG451700
rosa_wichuraiana	Rw6G039140 Rw6G039300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	359
AciI	CCGC	6 cut(s)	8, 86, 96, 357, 359, 580
AclWI	GGATC	2 cut(s)	348, 361
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	3 cut(s)	67, 661, 775
AfiI	CCNNNNNNNGG	3 cut(s)	170, 315, 523
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	194, 412, 608, 889
AluBI	AGCT	7 cut(s)	19, 455, 497, 533, 735, 868, 877
AluI	AGCT	7 cut(s)	19, 455, 497, 533, 735, 868, 877
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	278, 704
AlwI	GGATC	2 cut(s)	348, 361
AlwNI	CAGNNNCTG	2 cut(s)	677, 769
AoxI	GGCC	3 cut(s)	51, 514, 781
ApeKI	GCWGC	4 cut(s)	133, 452, 533, 706
AspS9I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	5 cut(s)	30, 98, 491, 622, 667
AvaII	GGWCC	5 cut(s)	161, 212, 327, 766, 830
BamHI	GGATCC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	120, 464, 520, 693
BccI	CCATC	1 cut(s)	627
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	278, 704
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	3 cut(s)	422, 678, 736
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	4 cut(s)	134, 453, 534, 707
BlsI	GCNGC	4 cut(s)	135, 454, 535, 708
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	5 cut(s)	161, 212, 327, 766, 830
BmgT120I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
BmiI	GGNNCC	4 cut(s)	328, 355, 806, 831
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	460, 619
BpuMI	CCSGG	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	45, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 315, 523
Bse1I	ACTGG	2 cut(s)	175, 398
Bse3DI	GCAATG	1 cut(s)	819
BseDI	CCNNGG	2 cut(s)	45, 357
BseGI	GGATG	2 cut(s)	16, 588
BseLI	CCNNNNNNNGG	3 cut(s)	170, 315, 523
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	175, 398
BseXI	GCAGC	4 cut(s)	120, 464, 520, 693
BsgI	GTGCAG	2 cut(s)	369, 471
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	3 cut(s)	53, 516, 783
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	170, 315, 523
BsmAI	GTCTC	2 cut(s)	278, 704
BsmBI	CGTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	53, 516, 783
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	6 cut(s)	8, 86, 96, 357, 359, 580
BspANI	GGCC	3 cut(s)	53, 516, 783
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	4 cut(s)	328, 355, 806, 831
BspPI	GGATC	2 cut(s)	348, 361
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	175, 398
BssECI	CCNNGG	2 cut(s)	45, 357
BssMI	GATC	1 cut(s)	353
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	42, 643
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	872
BstC8I	GCNNGC	5 cut(s)	243, 310, 468, 649, 879
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	16, 588
BstFNI	CGCG	1 cut(s)	359
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	278, 704
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 533, 818, 874
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	3 cut(s)	422, 678, 736
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	4 cut(s)	120, 464, 520, 693
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	53, 516, 783
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	16, 588
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	5 cut(s)	243, 310, 468, 649, 879
CaiI	CAGNNNCTG	2 cut(s)	677, 769
Cfr13I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
Cfr42I	CCGCGG	1 cut(s)	360
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	66, 660, 774
CviAII	CATG	3 cut(s)	652, 685, 703
CviQI	GTAC	3 cut(s)	66, 660, 774
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	5 cut(s)	161, 212, 327, 766, 830
EcoO109I	RGGNCCY	2 cut(s)	161, 766
Esp3I	CGTCTC	1 cut(s)	704
FaeI	CATG	3 cut(s)	655, 688, 706
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	651, 684, 702
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	4 cut(s)	134, 453, 534, 707
FokI	GGATG	2 cut(s)	23, 595
Fsp4HI	GCNGC	4 cut(s)	134, 453, 534, 707
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	4 cut(s)	134, 453, 534, 707
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	53, 516, 783
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	655, 688, 706
HinfI	GANTC	4 cut(s)	394, 430, 615, 716
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	5 cut(s)	30, 98, 491, 622, 667
Hpy166II	GTNNAC	4 cut(s)	74, 597, 682, 833
Hpy188I	TCNGA	2 cut(s)	435, 721
Hpy188III	TCNNGA	1 cut(s)	667
Hpy8I	GTNNAC	4 cut(s)	74, 597, 682, 833
HpyAV	CCTTC	5 cut(s)	203, 406, 499, 605, 773
HpyCH4III	ACNGT	2 cut(s)	42, 643
HpyCH4IV	ACGT	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 533, 818, 874
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	871
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	655, 688, 706
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	804
Lsp1109I	GCAGC	4 cut(s)	120, 464, 520, 693
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	2 cut(s)	36, 100
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	3 cut(s)	182, 494, 620
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	313, 843
MmeI	TCCRAC	2 cut(s)	354, 709
MnlI	CCTC	9 cut(s)	174, 263, 307, 397, 435, 478, 643, 674, 782
MseI	TTAA	2 cut(s)	201, 345
MspA1I	CMGCKG	2 cut(s)	359, 455
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	4 cut(s)	139, 533, 818, 874
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	655, 688, 706
NlaIV	GGNNCC	4 cut(s)	328, 355, 806, 831
NmuCI	GTSAC	1 cut(s)	36
PfeI	GAWTC	4 cut(s)	394, 430, 615, 716
PflFI	GACNNNGTC	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	135, 454, 535, 708
Ppu21I	YACGTR	1 cut(s)	872
PpuMI	RGGWCCY	2 cut(s)	161, 766
Psp5II	RGGWCCY	2 cut(s)	161, 766
PspN4I	GGNNCC	4 cut(s)	328, 355, 806, 831
PspPI	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
PspPPI	RGGWCCY	2 cut(s)	161, 766
PstNI	CAGNNNCTG	2 cut(s)	677, 769
PsuI	RGATCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	67, 661, 775
RsaNI	GTAC	3 cut(s)	66, 660, 774
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	201, 345
SatI	GCNGC	4 cut(s)	134, 453, 534, 707
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	7 cut(s)	161, 212, 327, 515, 766, 782, 830
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	3 cut(s)	422, 678, 736
Sfr303I	CCGCGG	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	360
SinI	GGWCC	5 cut(s)	161, 212, 327, 766, 830
SmlI	CTYRAG	3 cut(s)	200, 439, 634
SmoI	CTYRAG	3 cut(s)	200, 439, 634
Sse9I	AATT	2 cut(s)	313, 843
SsiI	CCGC	6 cut(s)	8, 86, 96, 357, 359, 580
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	42, 643
TaiI	ACGT	1 cut(s)	874
TasI	AATT	2 cut(s)	313, 843
TfiI	GAWTC	4 cut(s)	394, 430, 615, 716
Tru1I	TTAA	2 cut(s)	201, 345
Tru9I	TTAA	2 cut(s)	201, 345
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	4 cut(s)	133, 452, 533, 706
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	5 cut(s)	17, 222, 306, 443, 740
TspGWI	ACGGA	2 cut(s)	70, 266
TspRI	CASTG	1 cut(s)	393
Tth111I	GACNNNGTC	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	5 cut(s)	161, 212, 327, 766, 830
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.