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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1550 |
| AatII | GACGTC | 1 cut(s) | 2793 |
| AccB1I | GGYRCC | 1 cut(s) | 377 |
| AccBSI | CCGCTC | 1 cut(s) | 2266 |
| AccI | GTMKAC | 1 cut(s) | 815 |
| AccII | CGCG | 2 cut(s) | 1026, 1528 |
| AciI | CCGC | 5 cut(s) | 381, 1932, 2266, 2570, 2864 |
| AclI | AACGTT | 1 cut(s) | 745 |
| AclWI | GGATC | 6 cut(s) | 274, 433, 971, 1191, 2698, 2859 |
| AcoI | YGGCCR | 3 cut(s) | 1341, 2290, 2998 |
| AcuI | CTGAAG | 4 cut(s) | 405, 787, 2078, 2178 |
| AcyI | GRCGYC | 1 cut(s) | 2790 |
| AdeI | CACNNNGTG | 1 cut(s) | 2646 |
| AfaI | GTAC | 3 cut(s) | 690, 1167, 2403 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 371, 829, 1179, 2569 |
| AflII | CTTAAG | 2 cut(s) | 220, 2626 |
| AhlI | ACTAGT | 1 cut(s) | 1832 |
| AjnI | CCWGG | 3 cut(s) | 453, 1380, 2292 |
| Alw21I | GWGCWC | 3 cut(s) | 1440, 1596, 2651 |
| Alw26I | GTCTC | 6 cut(s) | 62, 265, 845, 1130, 1409, 1734 |
| Alw44I | GTGCAC | 2 cut(s) | 1436, 2647 |
| AlwI | GGATC | 6 cut(s) | 274, 433, 971, 1191, 2698, 2859 |
| AoxI | GGCC | 5 cut(s) | 388, 1341, 2290, 2295, 2998 |
| ApaLI | GTGCAC | 2 cut(s) | 1436, 2647 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1316 |
| AspLEI | GCGC | 3 cut(s) | 1026, 1028, 1528 |
| AspS9I | GGNCC | 2 cut(s) | 2185, 2752 |
| AsuHPI | GGTGA | 4 cut(s) | 1553, 2258, 2410, 2540 |
| AsuII | TTCGAA | 1 cut(s) | 1365 |
| AvaII | GGWCC | 2 cut(s) | 2185, 2752 |
| BaeGI | GKGCMC | 2 cut(s) | 1440, 2651 |
| BalI | TGGCCA | 1 cut(s) | 2292 |
| BanI | GGYRCC | 1 cut(s) | 377 |
| BanII | GRGCYC | 1 cut(s) | 1596 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 424, 456 |
| BauI | CACGAG | 3 cut(s) | 972, 2490, 2708 |
| BbsI | GAAGAC | 2 cut(s) | 2825, 3000 |
| Bbv12I | GWGCWC | 3 cut(s) | 1440, 1596, 2651 |
| BbvCI | CCTCAGC | 1 cut(s) | 1191 |
| BccI | CCATC | 6 cut(s) | 527, 760, 1115, 1747, 2282, 2525 |
| BceAI | ACGGC | 1 cut(s) | 3013 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2994, 3028 |
| BciT130I | CCWGG | 3 cut(s) | 455, 1382, 2294 |
| BciVI | GTATCC | 1 cut(s) | 1681 |
| BcoDI | GTCTC | 6 cut(s) | 62, 265, 845, 1130, 1409, 1734 |
| BcuI | ACTAGT | 1 cut(s) | 1832 |
| BfmI | CTRYAG | 2 cut(s) | 137, 1449 |
| BfrI | CTTAAG | 2 cut(s) | 220, 2626 |
| BfuI | GTATCC | 1 cut(s) | 1681 |
| BglII | AGATCT | 1 cut(s) | 1897 |
| Bme1390I | CCNGG | 3 cut(s) | 455, 1382, 2294 |
| Bme18I | GGWCC | 2 cut(s) | 2185, 2752 |
| BmgT120I | GGNCC | 2 cut(s) | 2185, 2752 |
| BmiI | GGNNCC | 3 cut(s) | 379, 451, 2753 |
| BmrFI | CCNGG | 3 cut(s) | 455, 1382, 2294 |
| BmsI | GCATC | 8 cut(s) | 168, 238, 400, 2367, 2397, 2554, 2599, 2678 |
| BoxI | GACNNNNGTC | 2 cut(s) | 74, 1401 |
| BpiI | GAAGAC | 2 cut(s) | 2825, 3000 |
| BpmI | CTGGAG | 1 cut(s) | 1403 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1191 |
| Bpu14I | TTCGAA | 1 cut(s) | 1365 |
| BpuEI | CTTGAG | 5 cut(s) | 32, 143, 883, 1753, 2960 |
| BsaBI | GATNNNNATC | 1 cut(s) | 537 |
| BsaHI | GRCGYC | 1 cut(s) | 2790 |
| BsaI | GGTCTC | 2 cut(s) | 265, 1130 |
| BsaJI | CCNNGG | 6 cut(s) | 102, 252, 453, 1173, 1248, 2205 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 617, 647, 2213, 2243 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 371, 829, 1179, 2569 |
| Bse1I | ACTGG | 2 cut(s) | 980, 2442 |
| Bse8I | GATNNNNATC | 1 cut(s) | 537 |
| BseBI | CCWGG | 3 cut(s) | 455, 1382, 2294 |
| BseDI | CCNNGG | 6 cut(s) | 102, 252, 453, 1173, 1248, 2205 |
| BseGI | GGATG | 2 cut(s) | 538, 2614 |
| BseJI | GATNNNNATC | 1 cut(s) | 537 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 371, 829, 1179, 2569 |
| BseMII | CTCAG | 9 cut(s) | 217, 726, 840, 876, 1035, 1182, 1321, 1953, 3033 |
| BseNI | ACTGG | 2 cut(s) | 980, 2442 |
| BsePI | GCGCGC | 1 cut(s) | 1024 |
| BseRI | GAGGAG | 7 cut(s) | 506, 539, 638, 1750, 2408, 2411, 2957 |
| BseSI | GKGCMC | 2 cut(s) | 1440, 2651 |
| Bsh1236I | CGCG | 2 cut(s) | 1026, 1528 |
| BshFI | GGCC | 5 cut(s) | 390, 1343, 2292, 2297, 3000 |
| BshNI | GGYRCC | 1 cut(s) | 377 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1440, 1596, 2651 |
| BslFI | GGGAC | 1 cut(s) | 2777 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 371, 829, 1179, 2569 |
| BsmAI | GTCTC | 6 cut(s) | 62, 265, 845, 1130, 1409, 1734 |
| BsmFI | GGGAC | 1 cut(s) | 2777 |
| BsnI | GGCC | 5 cut(s) | 390, 1343, 2292, 2297, 3000 |
| Bso31I | GGTCTC | 2 cut(s) | 265, 1130 |
| Bsp119I | TTCGAA | 1 cut(s) | 1365 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1440, 1596, 2651 |
| BspACI | CCGC | 5 cut(s) | 381, 1932, 2266, 2570, 2864 |
| BspANI | GGCC | 5 cut(s) | 390, 1343, 2292, 2297, 3000 |
| BspCNI | CTCAG | 9 cut(s) | 216, 727, 841, 877, 1036, 1183, 1320, 1954, 3032 |
| BspFNI | CGCG | 2 cut(s) | 1026, 1528 |
| BspHI | TCATGA | 2 cut(s) | 1596, 3028 |
| BspLI | GGNNCC | 3 cut(s) | 379, 451, 2753 |
| BspMAI | CTGCAG | 2 cut(s) | 141, 1453 |
| BspPI | GGATC | 6 cut(s) | 274, 433, 971, 1191, 2698, 2859 |
| BspQI | GCTCTTC | 1 cut(s) | 1128 |
| BspT104I | TTCGAA | 1 cut(s) | 1365 |
| BspT107I | GGYRCC | 1 cut(s) | 377 |
| BspTI | CTTAAG | 2 cut(s) | 220, 2626 |
| BspTNI | GGTCTC | 2 cut(s) | 265, 1130 |
| BsrBI | CCGCTC | 1 cut(s) | 2266 |
| BsrI | ACTGG | 2 cut(s) | 980, 2442 |
| BssECI | CCNNGG | 6 cut(s) | 102, 252, 453, 1173, 1248, 2205 |
| BssHII | GCGCGC | 1 cut(s) | 1024 |
| BssNI | GRCGYC | 1 cut(s) | 2790 |
| BssSI | CACGAG | 3 cut(s) | 972, 2490, 2708 |
| BssT1I | CCWWGG | 4 cut(s) | 102, 252, 1173, 2205 |
| Bst2BI | CACGAG | 3 cut(s) | 972, 2490, 2708 |
| Bst2UI | CCWGG | 3 cut(s) | 455, 1382, 2294 |
| Bst4CI | ACNGT | 9 cut(s) | 418, 555, 704, 1547, 2229, 2524, 2759, 2786, 2824 |
| Bst6I | CTCTTC | 1 cut(s) | 1128 |
| BstACI | GRCGYC | 1 cut(s) | 2790 |
| BstAFI | CTTAAG | 2 cut(s) | 220, 2626 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 303, 610, 895, 1148 |
| BstBI | TTCGAA | 1 cut(s) | 1365 |
| BstF5I | GGATG | 2 cut(s) | 538, 2614 |
| BstFNI | CGCG | 2 cut(s) | 1026, 1528 |
| BstHHI | GCGC | 3 cut(s) | 1026, 1028, 1528 |
| BstMAI | GTCTC | 6 cut(s) | 62, 265, 845, 1130, 1409, 1734 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 303, 610, 895, 1034, 1148, 2089, 2303 |
| BstNI | CCWGG | 3 cut(s) | 455, 1382, 2294 |
| BstNSI | RCATGY | 1 cut(s) | 1830 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 74, 1401 |
| BstSCI | CCNGG | 3 cut(s) | 453, 1380, 2292 |
| BstSFI | CTRYAG | 2 cut(s) | 137, 1449 |
| BstSLI | GKGCMC | 2 cut(s) | 1440, 2651 |
| BstUI | CGCG | 2 cut(s) | 1026, 1528 |
| BstV2I | GAAGAC | 2 cut(s) | 2825, 3000 |
| BstX2I | RGATCY | 4 cut(s) | 1183, 1897, 2703, 2851 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1681 |
| BstYI | RGATCY | 4 cut(s) | 1183, 1897, 2703, 2851 |
| BsuI | GTATCC | 1 cut(s) | 1681 |
| BsuRI | GGCC | 5 cut(s) | 390, 1343, 2292, 2297, 3000 |
| BtgZI | GCGATG | 1 cut(s) | 2252 |
| BtsCI | GGATG | 2 cut(s) | 538, 2614 |
| BtsI | GCAGTG | 2 cut(s) | 1446, 1672 |
| BtsIMutI | CAGTG | 7 cut(s) | 1446, 1672, 1945, 2187, 2520, 2764, 2791 |
| CciI | TCATGA | 2 cut(s) | 1596, 3028 |
| CfoI | GCGC | 3 cut(s) | 1026, 1028, 1528 |
| Cfr13I | GGNCC | 2 cut(s) | 2185, 2752 |
| Csp6I | GTAC | 3 cut(s) | 689, 1166, 2402 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1510, 1545 |
| CviQI | GTAC | 3 cut(s) | 689, 1166, 2402 |
| DraI | TTTAAA | 1 cut(s) | 477 |
| DraIII | CACNNNGTG | 1 cut(s) | 2646 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1550 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1550 |
| EaeI | YGGCCR | 3 cut(s) | 1341, 2290, 2998 |
| Eam1104I | CTCTTC | 1 cut(s) | 1128 |
| EarI | CTCTTC | 1 cut(s) | 1128 |
| Ecl136II | GAGCTC | 1 cut(s) | 1594 |
| Eco130I | CCWWGG | 4 cut(s) | 102, 252, 1173, 2205 |
| Eco147I | AGGCCT | 1 cut(s) | 390 |
| Eco24I | GRGCYC | 1 cut(s) | 1596 |
| Eco31I | GGTCTC | 2 cut(s) | 265, 1130 |
| Eco32I | GATATC | 1 cut(s) | 539 |
| Eco47I | GGWCC | 2 cut(s) | 2185, 2752 |
| Eco53kI | GAGCTC | 1 cut(s) | 1594 |
| Eco57I | CTGAAG | 4 cut(s) | 405, 787, 2078, 2178 |
| EcoICRI | GAGCTC | 1 cut(s) | 1594 |
| EcoRI | GAATTC | 1 cut(s) | 1504 |
| EcoRII | CCWGG | 3 cut(s) | 453, 1380, 2292 |
| EcoRV | GATATC | 1 cut(s) | 539 |
| EcoT14I | CCWWGG | 4 cut(s) | 102, 252, 1173, 2205 |
| EcoT22I | ATGCAT | 1 cut(s) | 183 |
| EcoT38I | GRGCYC | 1 cut(s) | 1596 |
| ErhI | CCWWGG | 4 cut(s) | 102, 252, 1173, 2205 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 597, 629, 1122, 1154 |
| FaqI | GGGAC | 1 cut(s) | 2777 |
| FauI | CCCGC | 1 cut(s) | 1939 |
| FblI | GTMKAC | 1 cut(s) | 815 |
| FokI | GGATG | 2 cut(s) | 545, 2621 |
| FriOI | GRGCYC | 1 cut(s) | 1596 |
| GlaI | GCGC | 3 cut(s) | 1025, 1027, 1527 |
| GsuI | CTGGAG | 1 cut(s) | 1403 |
| HaeIII | GGCC | 5 cut(s) | 390, 1343, 2292, 2297, 3000 |
| HhaI | GCGC | 3 cut(s) | 1026, 1028, 1528 |
| Hin1I | GRCGYC | 1 cut(s) | 2790 |
| Hin6I | GCGC | 3 cut(s) | 1024, 1026, 1526 |
| HinP1I | GCGC | 3 cut(s) | 1024, 1026, 1526 |
| HindIII | AAGCTT | 4 cut(s) | 92, 326, 2063, 2484 |
| HphI | GGTGA | 4 cut(s) | 1553, 2258, 2410, 2540 |
| Hpy166II | GTNNAC | 8 cut(s) | 816, 1438, 1532, 2185, 2249, 2649, 2755, 2951 |
| Hpy8I | GTNNAC | 8 cut(s) | 816, 1438, 1532, 2185, 2249, 2649, 2755, 2951 |
| HpyCH4III | ACNGT | 9 cut(s) | 418, 555, 704, 1547, 2229, 2524, 2759, 2786, 2824 |
| HpyCH4IV | ACGT | 3 cut(s) | 745, 2106, 2790 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 303, 610, 895, 1034, 1148, 2089, 2303 |
| HpySE526I | ACGT | 3 cut(s) | 745, 2106, 2790 |
| Hsp92I | GRCGYC | 1 cut(s) | 2790 |
| HspAI | GCGC | 3 cut(s) | 1024, 1026, 1526 |
| LguI | GCTCTTC | 1 cut(s) | 1128 |
| LmnI | GCTCC | 3 cut(s) | 625, 2131, 2278 |
| LweI | GCATC | 8 cut(s) | 168, 238, 400, 2367, 2397, 2554, 2599, 2678 |
| MaeII | ACGT | 3 cut(s) | 745, 2106, 2790 |
| MaeIII | GTNAC | 8 cut(s) | 148, 241, 315, 698, 1541, 2589, 2638, 2786 |
| MbiI | CCGCTC | 1 cut(s) | 2266 |
| MfeI | CAATTG | 2 cut(s) | 1686, 2594 |
| MflI | RGATCY | 4 cut(s) | 1183, 1897, 2703, 2851 |
| MhlI | GDGCHC | 3 cut(s) | 1440, 1596, 2651 |
| MlsI | TGGCCA | 1 cut(s) | 2292 |
| MluNI | TGGCCA | 1 cut(s) | 2292 |
| MlyI | GAGTC | 5 cut(s) | 64, 1391, 1394, 1727, 2929 |
| MmeI | TCCRAC | 3 cut(s) | 468, 1873, 2211 |
| Mox20I | TGGCCA | 1 cut(s) | 2292 |
| Mph1103I | ATGCAT | 1 cut(s) | 183 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1316 |
| MscI | TGGCCA | 1 cut(s) | 2292 |
| MslI | CAYNNNNRTG | 4 cut(s) | 186, 375, 1539, 1803 |
| Msp20I | TGGCCA | 1 cut(s) | 2292 |
| MspA1I | CMGCKG | 4 cut(s) | 110, 383, 1454, 1841 |
| MspCI | CTTAAG | 2 cut(s) | 220, 2626 |
| MspR9I | CCNGG | 3 cut(s) | 455, 1382, 2294 |
| MunI | CAATTG | 2 cut(s) | 1686, 2594 |
| MvaI | CCWGG | 3 cut(s) | 455, 1382, 2294 |
| MvnI | CGCG | 2 cut(s) | 1026, 1528 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 303, 610, 895, 1034, 1148, 2089, 2303 |
| NlaIV | GGNNCC | 3 cut(s) | 379, 451, 2753 |
| NmuCI | GTSAC | 5 cut(s) | 698, 1541, 2589, 2638, 2786 |
| NsiI | ATGCAT | 1 cut(s) | 183 |
| NspI | RCATGY | 1 cut(s) | 1830 |
| NspV | TTCGAA | 1 cut(s) | 1365 |
| PaeI | GCATGC | 1 cut(s) | 1830 |
| PagI | TCATGA | 2 cut(s) | 1596, 3028 |
| PauI | GCGCGC | 1 cut(s) | 1024 |
| PceI | AGGCCT | 1 cut(s) | 390 |
| PciSI | GCTCTTC | 1 cut(s) | 1128 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1316 |
| PfeI | GAWTC | 8 cut(s) | 193, 458, 845, 1967, 2192, 2828, 2963, 3025 |
| PleI | GAGTC | 5 cut(s) | 64, 1391, 1393, 1726, 2929 |
| PpsI | GAGTC | 5 cut(s) | 64, 1391, 1393, 1726, 2929 |
| PshAI | GACNNNNGTC | 2 cut(s) | 74, 1401 |
| Psp124BI | GAGCTC | 1 cut(s) | 1596 |
| Psp1406I | AACGTT | 1 cut(s) | 745 |
| Psp6I | CCWGG | 3 cut(s) | 453, 1380, 2292 |
| PspGI | CCWGG | 3 cut(s) | 453, 1380, 2292 |
| PspN4I | GGNNCC | 3 cut(s) | 379, 451, 2753 |
| PspPI | GGNCC | 2 cut(s) | 2185, 2752 |
| PstI | CTGCAG | 2 cut(s) | 141, 1453 |
| PsuI | RGATCY | 4 cut(s) | 1183, 1897, 2703, 2851 |
| PteI | GCGCGC | 1 cut(s) | 1024 |
| PvuII | CAGCTG | 3 cut(s) | 110, 1454, 1841 |
| RsaI | GTAC | 3 cut(s) | 690, 1167, 2403 |
| RsaNI | GTAC | 3 cut(s) | 689, 1166, 2402 |
| RseI | CAYNNNNRTG | 4 cut(s) | 186, 375, 1539, 1803 |
| SacI | GAGCTC | 1 cut(s) | 1596 |
| SapI | GCTCTTC | 1 cut(s) | 1128 |
| Sau96I | GGNCC | 2 cut(s) | 2185, 2752 |
| SchI | GAGTC | 5 cut(s) | 64, 1391, 1394, 1727, 2929 |
| ScrFI | CCNGG | 3 cut(s) | 455, 1382, 2294 |
| SduI | GDGCHC | 3 cut(s) | 1440, 1596, 2651 |
| SfaNI | GCATC | 8 cut(s) | 168, 238, 400, 2367, 2397, 2554, 2599, 2678 |
| SfcI | CTRYAG | 2 cut(s) | 137, 1449 |
| SfuI | TTCGAA | 1 cut(s) | 1365 |
| SinI | GGWCC | 2 cut(s) | 2185, 2752 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 186, 375, 1539, 1803 |
| SmlI | CTYRAG | 7 cut(s) | 11, 122, 220, 862, 1732, 2626, 2939 |
| SmoI | CTYRAG | 7 cut(s) | 11, 122, 220, 862, 1732, 2626, 2939 |
| SpeI | ACTAGT | 1 cut(s) | 1832 |
| SphI | GCATGC | 1 cut(s) | 1830 |
| SseBI | AGGCCT | 1 cut(s) | 390 |
| SsiI | CCGC | 5 cut(s) | 381, 1932, 2266, 2570, 2864 |
| SspI | AATATT | 1 cut(s) | 2737 |
| SstI | GAGCTC | 1 cut(s) | 1596 |
| StuI | AGGCCT | 1 cut(s) | 390 |
| StyD4I | CCNGG | 3 cut(s) | 453, 1380, 2292 |
| StyI | CCWWGG | 4 cut(s) | 102, 252, 1173, 2205 |
| TaaI | ACNGT | 9 cut(s) | 418, 555, 704, 1547, 2229, 2524, 2759, 2786, 2824 |
| TaiI | ACGT | 3 cut(s) | 748, 2109, 2793 |
| TaqI | TCGA | 4 cut(s) | 741, 1365, 1557, 3014 |
| TatI | WGTACW | 1 cut(s) | 1165 |
| TauI | GCSGC | 3 cut(s) | 383, 2269, 2867 |
| TfiI | GAWTC | 8 cut(s) | 193, 458, 845, 1967, 2192, 2828, 2963, 3025 |
| TscAI | CASTG | 7 cut(s) | 1453, 1672, 1945, 2187, 2527, 2764, 2791 |
| TseFI | GTSAC | 5 cut(s) | 698, 1541, 2589, 2638, 2786 |
| Tsp45I | GTSAC | 5 cut(s) | 698, 1541, 2589, 2638, 2786 |
| TspGWI | ACGGA | 1 cut(s) | 1616 |
| TspRI | CASTG | 7 cut(s) | 1453, 1672, 1945, 2187, 2527, 2764, 2791 |
| Vha464I | CTTAAG | 2 cut(s) | 220, 2626 |
| VneI | GTGCAC | 2 cut(s) | 1436, 2647 |
| VpaK11BI | GGWCC | 2 cut(s) | 2185, 2752 |
| XbaI | TCTAGA | 2 cut(s) | 541, 1297 |
| XceI | RCATGY | 1 cut(s) | 1830 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2659 |
| XmiI | GTMKAC | 1 cut(s) | 815 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1316 |
| ZraI | GACGTC | 1 cut(s) | 2791 |
| Zsp2I | ATGCAT | 1 cut(s) | 183 |