Rh6DG449700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001092
Physical Location & Seq
Forward (+)
62234910 .. 62236494
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG449700.1

Sequence Viewer

Length: 1227 bp
ATGGACAAGGACAAGAGCCGTACCGATCTGCTCGCTGCCGGCCGTAAAAAGCTTCAACAATTTCGTCAGAAGAAGGATAAAGGCAGTGGAAGCCAGGGAAAATCCACGAAAAAGTCTGGAAAATCAGAGCAGCATGGGGCTGTTGCTGATGCAGTCTCAACTGCAACTAAACCTGCAGCATCCATGAAGTCTGGAAAATCAGAGCAGCATGAGGCTGTTGCTGATGCGGTCTCAACTGCAACTAAACCTACAGCATCGTCTCAGGTCCGTGACGGAGAAATTAAGTCTGCTACAGGTTCTAATTCAGGAACTGTCAACACATCAGAGTCAAATTCTGTAGAGAATTCTGCAGACTCTGACACTAGTGTAGCTGTTGCTGGTCCCTCGGCAGTGCTCATTACACAGGAGAAAAGTGTGGTTGAAACTGAATTGGGGGAAAATACTGAATCGCCATCAGAGGAGGTGGGGGTTAGTAAGCGTGATGCTGACTCTTCTGTTCAGATTGAAGGTGAGAGTACTGGGACTGCTGATGCTGAGGTGGCAAGAGACATTTCATTGGACACTTCACATACAGTGGATTCTGGGGGAGAAGCCAAGAATTCAAAGATGTCTATACAGGTTGATGTATCAGCGCAACATCCTTCAGTTGATATTACAGACGGGATGTCCGTTACTGTTGAATCAGAGATTCCAAGTAGGGAAAAGGAGTCATTGCCTTCAGTGGAAAATACTAATACATCCTTATTGCAGGAGAGGGAAGATCATGTAACAGATGAAGAATTACAGCAGTTAAATGCCTTGTCTCTCCAGCGTGAAAGTGAAATCATTGTTCCAAGGGAAAGTTTAGCTGTTGTTGGTCCCTCGGCAGTTCCAATTACAGAGGAGAAAAGTGTGGTTGAAACCGAATTGGAGAAAAATGCCGAATCGTCATCAGAGGAAGTGGGGGTTAGTAAGCGTGATGCTGACTCTTCTGTTCAGAATGAAGGTGAGAGTACTGAGACTGCTGATGCTGAGATGGCAAGAGACAACTCATTGGGCACTTCACGTACAGTGGATTCTGGAGGAGAAGCCGAAAATTCAAATGTGTCTATACAGGTTGATGAATCGGCCCAACATGCTTCAGTCGATATTACAGAGGGGATGTCCGTCACTGTTGAATCAGAGATTCCGAGTAGAGAAAAGGAGTCAAAGCCTTCACGGGAAAATATTAATACATCCTTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

42.89

Weight (kDa)

4.51

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 4 cut(s) 331, 343, 598, 1075
AcuI CTGAAG 3 cut(s) 627, 702, 1104
AfaI GTAC 4 cut(s) 22, 517, 994, 1048
AgsI TTSAA 8 cut(s) 56, 422, 506, 603, 680, 899, 1080, 1157
AhdI GACNNNNNGTC 1 cut(s) 664
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 3 cut(s) 52, 371, 848
AluI AGCT 3 cut(s) 52, 371, 848
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 7 cut(s) 160, 235, 264, 540, 807, 992, 1017
AlwNI CAGNNNCTG 2 cut(s) 311, 356
AoxI GGCC 2 cut(s) 40, 1107
ApeKI GCWGC 4 cut(s) 35, 130, 176, 205
ApoI RAATTY 4 cut(s) 331, 343, 598, 1075
AseI ATTAAT 1 cut(s) 1209
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 4 cut(s) 265, 380, 857, 1108
AsuHPI GGTGA 2 cut(s) 521, 998
AvaII GGWCC 3 cut(s) 265, 380, 857
BaeGI GKGCMC 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 22, 142, 188, 217
BccI CCATC 2 cut(s) 460, 1009
BceAI ACGGC 2 cut(s) 3, 27
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 7 cut(s) 160, 235, 264, 540, 807, 992, 1017
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 5 cut(s) 174, 249, 291, 336, 348
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 4 cut(s) 36, 131, 177, 206
BlsI GCNGC 4 cut(s) 37, 132, 178, 207
BmcAI AGTACT 2 cut(s) 517, 994
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 3 cut(s) 265, 380, 857
BmeRI GACNNNNNGTC 1 cut(s) 664
BmgT120I GGNCC 4 cut(s) 265, 380, 857, 1108
BmiI GGNNCC 2 cut(s) 382, 859
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 8 cut(s) 139, 188, 214, 263, 472, 520, 949, 997
BmuI ACTGGG 1 cut(s) 528
BpmI CTGGAG 2 cut(s) 791, 1080
Bpu10I CCTNAGC 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 1046
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 4 cut(s) 94, 384, 833, 861
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 710
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 4 cut(s) 94, 384, 833, 861
BseGI GGATG 6 cut(s) 179, 637, 669, 737, 1146, 1214
BseMI GCAATG 1 cut(s) 710
BseMII CTCAG 4 cut(s) 275, 525, 987, 1002
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 3 cut(s) 473, 896, 1077
BseSI GKGCMC 1 cut(s) 1040
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 4 cut(s) 22, 142, 188, 217
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 42, 1109
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 3 cut(s) 366, 535, 843
BsmAI GTCTC 7 cut(s) 160, 235, 264, 540, 807, 992, 1017
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 3 cut(s) 366, 535, 843
BsnI GGCC 2 cut(s) 42, 1109
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 396, 1040
Bsp143I GATC 2 cut(s) 25, 760
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 42, 1109
BspCNI CTCAG 4 cut(s) 274, 526, 988, 1003
BspLI GGNNCC 2 cut(s) 382, 859
BspMAI CTGCAG 2 cut(s) 178, 352
BspMI ACCTGC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 710
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 94, 384, 833, 861
BssMI GATC 2 cut(s) 25, 760
BssT1I CCWWGG 1 cut(s) 833
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 5 cut(s) 313, 574, 676, 1051, 1153
Bst6I CTCTTC 2 cut(s) 496, 973
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 2 cut(s) 33, 40
BstDEI CTNAG 4 cut(s) 261, 534, 996, 1011
BstF5I GGATG 6 cut(s) 179, 637, 669, 737, 1146, 1214
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 2 cut(s) 28, 763
BstMAI GTCTC 7 cut(s) 160, 235, 264, 540, 807, 992, 1017
BstMBI GATC 2 cut(s) 25, 760
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 90, 539, 1016, 1115
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 1118
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 5 cut(s) 174, 249, 291, 336, 348
BstSLI GKGCMC 1 cut(s) 1040
BstV1I GCAGC 4 cut(s) 22, 142, 188, 217
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 42, 1109
BtsCI GGATG 6 cut(s) 179, 637, 669, 737, 1146, 1214
BtsI GCAGTG 2 cut(s) 91, 396
BtsIMutI CAGTG 6 cut(s) 91, 396, 579, 726, 1056, 1149
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 33, 40
CaiI CAGNNNCTG 2 cut(s) 311, 356
CfoI GCGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 4 cut(s) 265, 380, 857, 1108
Csp6I GTAC 4 cut(s) 21, 516, 993, 1047
CviAII CATG 5 cut(s) 134, 184, 209, 764, 1115
CviQI GTAC 4 cut(s) 21, 516, 993, 1047
DdeI CTNAG 4 cut(s) 261, 534, 996, 1011
DpnI GATC 2 cut(s) 27, 762
DpnII GATC 2 cut(s) 25, 760
DriI GACNNNNNGTC 1 cut(s) 664
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 496, 973
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 2 cut(s) 496, 973
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 833
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 3 cut(s) 265, 380, 857
Eco52I CGGCCG 1 cut(s) 40
Eco57I CTGAAG 3 cut(s) 627, 702, 1104
EcoRI GAATTC 2 cut(s) 343, 598
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 833
ErhI CCWWGG 1 cut(s) 833
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 5 cut(s) 137, 187, 212, 767, 1118
FaiI YATR 8 cut(s) 135, 185, 210, 570, 614, 765, 1091, 1116
FaqI GGGAC 3 cut(s) 366, 535, 843
FatI CATG 5 cut(s) 133, 183, 208, 763, 1114
Fnu4HI GCNGC 4 cut(s) 36, 131, 177, 206
FokI GGATG 6 cut(s) 166, 624, 676, 724, 1153, 1201
Fsp4HI GCNGC 4 cut(s) 36, 131, 177, 206
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 633
GluI GCNGC 4 cut(s) 36, 131, 177, 206
GsuI CTGGAG 2 cut(s) 791, 1080
HaeIII GGCC 2 cut(s) 42, 1109
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 634
Hin1II CATG 5 cut(s) 137, 187, 212, 767, 1118
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 50
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 521, 998
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 117, 192, 306, 1059
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 6 cut(s) 67, 500, 651, 726, 977, 1203
HpyCH4III ACNGT 5 cut(s) 313, 574, 676, 1051, 1153
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 6 cut(s) 152, 164, 176, 239, 350, 748
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 539, 1016, 1115
HpyF3I CTNAG 4 cut(s) 261, 534, 996, 1011
HpySE526I ACGT 1 cut(s) 1045
Hsp92II CATG 5 cut(s) 137, 187, 212, 767, 1118
HspAI GCGC 1 cut(s) 632
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 25, 760
Lsp1109I GCAGC 4 cut(s) 22, 142, 188, 217
LweI GCATC 8 cut(s) 139, 188, 214, 263, 472, 520, 949, 997
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 4 cut(s) 269, 670, 766, 1147
MalI GATC 2 cut(s) 27, 762
MboI GATC 2 cut(s) 25, 760
MboII GAAGA 5 cut(s) 82, 483, 770, 788, 960
MhlI GDGCHC 2 cut(s) 396, 1040
MlyI GAGTC 6 cut(s) 335, 347, 482, 716, 959, 1193
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 4 cut(s) 282, 791, 1209, 1220
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 90, 539, 1016, 1115
NaeI GCCGGC 1 cut(s) 40
NdeII GATC 2 cut(s) 25, 760
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 5 cut(s) 137, 187, 212, 767, 1118
NlaIV GGNNCC 2 cut(s) 382, 859
NmeAIII GCCGAG 2 cut(s) 365, 842
NmuCI GTSAC 2 cut(s) 269, 1147
NspI RCATGY 1 cut(s) 1118
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 9 cut(s) 446, 578, 680, 688, 923, 1055, 1103, 1157, 1165
PkrI GCNGC 4 cut(s) 37, 132, 178, 207
PleI GAGTC 6 cut(s) 334, 347, 482, 715, 959, 1192
PpsI GAGTC 6 cut(s) 334, 347, 482, 715, 959, 1192
Ppu21I YACGTR 1 cut(s) 1046
PshBI ATTAAT 1 cut(s) 1209
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 382, 859
PspPI GGNCC 4 cut(s) 265, 380, 857, 1108
PstI CTGCAG 2 cut(s) 178, 352
PstNI CAGNNNCTG 2 cut(s) 311, 356
RsaI GTAC 4 cut(s) 22, 517, 994, 1048
RsaNI GTAC 4 cut(s) 21, 516, 993, 1047
SaqAI TTAA 4 cut(s) 282, 791, 1209, 1220
SatI GCNGC 4 cut(s) 36, 131, 177, 206
Sau3AI GATC 2 cut(s) 25, 760
Sau96I GGNCC 4 cut(s) 265, 380, 857, 1108
ScaI AGTACT 2 cut(s) 517, 994
SchI GAGTC 6 cut(s) 335, 347, 482, 716, 959, 1193
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 396, 1040
SfaNI GCATC 8 cut(s) 139, 188, 214, 263, 472, 520, 949, 997
SfcI CTRYAG 5 cut(s) 174, 249, 291, 336, 348
SinI GGWCC 3 cut(s) 265, 380, 857
SpeI ACTAGT 1 cut(s) 362
SsiI CCGC 1 cut(s) 227
SspI AATATT 1 cut(s) 1207
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 5 cut(s) 313, 574, 676, 1051, 1153
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 1 cut(s) 1125
TatI WGTACW 2 cut(s) 515, 992
TfiI GAWTC 9 cut(s) 446, 578, 680, 688, 923, 1055, 1103, 1157, 1165
Tru1I TTAA 4 cut(s) 282, 791, 1209, 1220
Tru9I TTAA 4 cut(s) 282, 791, 1209, 1220
TscAI CASTG 6 cut(s) 91, 396, 579, 726, 1056, 1156
TseFI GTSAC 2 cut(s) 269, 1147
TseI GCWGC 4 cut(s) 35, 130, 176, 205
Tsp45I GTSAC 2 cut(s) 269, 1147
TspDTI ATGAA 5 cut(s) 200, 543, 789, 996, 1116
TspGWI ACGGA 4 cut(s) 257, 288, 658, 1135
TspRI CASTG 6 cut(s) 91, 396, 579, 726, 1056, 1156
VpaK11BI GGWCC 3 cut(s) 265, 380, 857
VspI ATTAAT 1 cut(s) 1209
XapI RAATTY 4 cut(s) 331, 343, 598, 1075
XceI RCATGY 1 cut(s) 1118
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 2 cut(s) 517, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.