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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 181 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 6709 |
| AccBSI | CCGCTC | 1 cut(s) | 3550 |
| AccI | GTMKAC | 2 cut(s) | 2798, 5141 |
| AciI | CCGC | 7 cut(s) | 227, 3281, 3550, 6255, 6495, 6893, 7276 |
| AclI | AACGTT | 1 cut(s) | 5071 |
| AcoI | YGGCCR | 3 cut(s) | 40, 2733, 6613 |
| AdeI | CACNNNGTG | 1 cut(s) | 6969 |
| AfeI | AGCGCT | 1 cut(s) | 2959 |
| AflII | CTTAAG | 4 cut(s) | 3524, 4387, 4546, 6949 |
| AflIII | ACRYGT | 2 cut(s) | 2095, 2881 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 664, 4087, 7368 |
| AhlI | ACTAGT | 4 cut(s) | 362, 1427, 2345, 6155 |
| AjiI | CACGTC | 3 cut(s) | 1881, 3089, 3139 |
| AjnI | CCWGG | 5 cut(s) | 93, 3827, 4779, 5149, 5454 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3841, 3873, 3917, 3949, 4796, 4828 |
| Alw21I | GWGCWC | 7 cut(s) | 396, 1956, 2187, 5763, 5919, 6974, 7080 |
| Alw44I | GTGCAC | 3 cut(s) | 5759, 6970, 7076 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 311, 356, 1421, 3481, 4967 |
| Ama87I | CYCGRG | 2 cut(s) | 1326, 5843 |
| Aor51HI | AGCGCT | 1 cut(s) | 2959 |
| AoxI | GGCC | 8 cut(s) | 40, 379, 1107, 1908, 2106, 2139, 2733, 6613 |
| ApaLI | GTGCAC | 3 cut(s) | 5759, 6970, 7076 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3618, 3650 |
| AseI | ATTAAT | 4 cut(s) | 732, 1209, 1797, 5826 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 2427, 2892, 3291, 5639, 7334 |
| AspLEI | GCGC | 5 cut(s) | 634, 1699, 2469, 2960, 5851 |
| AspS9I | GGNCC | 9 cut(s) | 265, 380, 857, 1108, 1445, 1960, 2191, 6508, 7370 |
| AsuNHI | GCTAGC | 2 cut(s) | 2954, 5464 |
| AvaI | CYCGRG | 2 cut(s) | 1326, 5843 |
| AvaII | GGWCC | 7 cut(s) | 265, 857, 1445, 1960, 2191, 6508, 7370 |
| AxyI | CCTNAGG | 2 cut(s) | 4522, 4681 |
| BaeGI | GKGCMC | 5 cut(s) | 1040, 1461, 5763, 6974, 7080 |
| BalI | TGGCCA | 2 cut(s) | 2735, 6615 |
| BanII | GRGCYC | 3 cut(s) | 1956, 2187, 5919 |
| BauI | CACGAG | 3 cut(s) | 5298, 6813, 7031 |
| BbsI | GAAGAC | 5 cut(s) | 3351, 3669, 4086, 4158, 7148 |
| Bbv12I | GWGCWC | 7 cut(s) | 396, 1956, 2187, 5763, 5919, 6974, 7080 |
| BbvCI | CCTCAGC | 4 cut(s) | 534, 1450, 1599, 5517 |
| BceAI | ACGGC | 2 cut(s) | 3, 27 |
| BciT130I | CCWGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| BciVI | GTATCC | 1 cut(s) | 6004 |
| BclI | TGATCA | 3 cut(s) | 1711, 2710, 4249 |
| BcuI | ACTAGT | 4 cut(s) | 362, 1427, 2345, 6155 |
| BfoI | RGCGCY | 2 cut(s) | 2470, 2961 |
| BfrI | CTTAAG | 4 cut(s) | 3524, 4387, 4546, 6949 |
| BfuAI | ACCTGC | 1 cut(s) | 181 |
| BfuI | GTATCC | 1 cut(s) | 6004 |
| BglII | AGATCT | 4 cut(s) | 2406, 2626, 3654, 6220 |
| BlpI | GCTNAGC | 1 cut(s) | 3146 |
| BmcAI | AGTACT | 5 cut(s) | 517, 994, 1582, 4607, 7134 |
| Bme1390I | CCNGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| Bme18I | GGWCC | 7 cut(s) | 265, 857, 1445, 1960, 2191, 6508, 7370 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 664, 4087, 7368 |
| BmeT110I | CYCGRG | 2 cut(s) | 1326, 5843 |
| BmgBI | CACGTC | 3 cut(s) | 1881, 3089, 3139 |
| BmgT120I | GGNCC | 9 cut(s) | 265, 380, 857, 1108, 1445, 1960, 2191, 6508, 7370 |
| BmiI | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7371, 7372 |
| BmrFI | CCNGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| BmrI | ACTGGG | 4 cut(s) | 528, 1005, 1593, 2517 |
| BmtI | GCTAGC | 2 cut(s) | 2958, 5468 |
| BmuI | ACTGGG | 4 cut(s) | 528, 1005, 1593, 2517 |
| BoxI | GACNNNNGTC | 2 cut(s) | 4241, 5724 |
| BpiI | GAAGAC | 5 cut(s) | 3351, 3669, 4086, 4158, 7148 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2096, 2128, 5042, 5074, 6266, 6298 |
| BpmI | CTGGAG | 6 cut(s) | 791, 1080, 1268, 1668, 3218, 4079 |
| Bpu10I | CCTNAGC | 6 cut(s) | 534, 1450, 1599, 1955, 2186, 5517 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3146 |
| BpuEI | CTTGAG | 9 cut(s) | 2483, 3527, 4199, 4310, 5209, 6076, 6605, 7121, 7283 |
| Bsa29I | ATCGAT | 1 cut(s) | 4044 |
| BsaAI | YACGTR | 1 cut(s) | 1046 |
| BsaBI | GATNNNNATC | 5 cut(s) | 1145, 2376, 2712, 3765, 4863 |
| BsaI | GGTCTC | 4 cut(s) | 235, 4591, 4721, 5456 |
| BsaWI | WCCGGW | 1 cut(s) | 2491 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 4943, 4973, 6536, 6566 |
| Bse118I | RCCGGY | 1 cut(s) | 3782 |
| Bse21I | CCTNAGG | 2 cut(s) | 4522, 4681 |
| Bse3DI | GCAATG | 3 cut(s) | 710, 1775, 3381 |
| Bse8I | GATNNNNATC | 5 cut(s) | 1145, 2376, 2712, 3765, 4863 |
| BseBI | CCWGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| BseCI | ATCGAT | 1 cut(s) | 4044 |
| BseJI | GATNNNNATC | 5 cut(s) | 1145, 2376, 2712, 3765, 4863 |
| BseMI | GCAATG | 3 cut(s) | 710, 1775, 3381 |
| BseSI | GKGCMC | 5 cut(s) | 1040, 1461, 5763, 6974, 7080 |
| BsgI | GTGCAG | 5 cut(s) | 3161, 3434, 4094, 4725, 6746 |
| BshFI | GGCC | 8 cut(s) | 42, 381, 1109, 1910, 2108, 2141, 2735, 6615 |
| BshVI | ATCGAT | 1 cut(s) | 4044 |
| BsiHKAI | GWGCWC | 7 cut(s) | 396, 1956, 2187, 5763, 5919, 6974, 7080 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1326, 5843 |
| BsiSI | CCGG | 2 cut(s) | 2492, 3783 |
| BslFI | GGGAC | 8 cut(s) | 535, 572, 843, 1012, 1431, 1600, 3421, 7356 |
| BsmBI | CGTCTC | 1 cut(s) | 264 |
| BsmFI | GGGAC | 8 cut(s) | 535, 572, 843, 1012, 1431, 1600, 3421, 7356 |
| BsmI | GAATGC | 1 cut(s) | 1873 |
| BsnI | GGCC | 8 cut(s) | 42, 381, 1109, 1910, 2108, 2141, 2735, 6615 |
| Bso31I | GGTCTC | 4 cut(s) | 235, 4591, 4721, 5456 |
| BsoBI | CYCGRG | 2 cut(s) | 1326, 5843 |
| Bsp1286I | GDGCHC | 9 cut(s) | 396, 1040, 1461, 1956, 2187, 5763, 5919, 6974, 7080 |
| Bsp1407I | TGTACA | 1 cut(s) | 3841 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3146 |
| BspACI | CCGC | 7 cut(s) | 227, 3281, 3550, 6255, 6495, 6893, 7276 |
| BspANI | GGCC | 8 cut(s) | 42, 381, 1109, 1910, 2108, 2141, 2735, 6615 |
| BspDI | ATCGAT | 1 cut(s) | 4044 |
| BspHI | TCATGA | 2 cut(s) | 2560, 5919 |
| BspLI | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7371, 7372 |
| BspMAI | CTGCAG | 7 cut(s) | 178, 352, 1417, 3012, 4308, 5776, 6912 |
| BspMI | ACCTGC | 1 cut(s) | 181 |
| BspOI | GCTAGC | 2 cut(s) | 2958, 5468 |
| BspQI | GCTCTTC | 2 cut(s) | 5454, 6842 |
| BspTI | CTTAAG | 4 cut(s) | 3524, 4387, 4546, 6949 |
| BspTNI | GGTCTC | 4 cut(s) | 235, 4591, 4721, 5456 |
| BsrBI | CCGCTC | 1 cut(s) | 3550 |
| BsrDI | GCAATG | 3 cut(s) | 710, 1775, 3381 |
| BsrFI | RCCGGY | 1 cut(s) | 3782 |
| BsrGI | TGTACA | 1 cut(s) | 3841 |
| BssAI | RCCGGY | 1 cut(s) | 3782 |
| BssSI | CACGAG | 3 cut(s) | 5298, 6813, 7031 |
| BssT1I | CCWWGG | 6 cut(s) | 833, 3393, 4419, 4578, 5499, 6528 |
| Bst2BI | CACGAG | 3 cut(s) | 5298, 6813, 7031 |
| Bst2UI | CCWGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| Bst6I | CTCTTC | 6 cut(s) | 496, 973, 1761, 3645, 5454, 6842 |
| BstAFI | CTTAAG | 4 cut(s) | 3524, 4387, 4546, 6949 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 4470, 4629, 4936, 5221, 5474 |
| BstAUI | TGTACA | 1 cut(s) | 3841 |
| BstBAI | YACGTR | 1 cut(s) | 1046 |
| BstH2I | RGCGCY | 2 cut(s) | 2470, 2961 |
| BstHHI | GCGC | 5 cut(s) | 634, 1699, 2469, 2960, 5851 |
| BstNI | CCWGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| BstNSI | RCATGY | 8 cut(s) | 1118, 1706, 2099, 2330, 2885, 3056, 4006, 6153 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 4241, 5724 |
| BstSCI | CCNGG | 5 cut(s) | 93, 3827, 4779, 5149, 5454 |
| BstSLI | GKGCMC | 5 cut(s) | 1040, 1461, 5763, 6974, 7080 |
| BstV2I | GAAGAC | 5 cut(s) | 3351, 3669, 4086, 4158, 7148 |
| BstX2I | RGATCY | 8 cut(s) | 2406, 2626, 3170, 3654, 5509, 6220, 7026, 7174 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 6004 |
| BstYI | RGATCY | 8 cut(s) | 2406, 2626, 3170, 3654, 5509, 6220, 7026, 7174 |
| Bsu15I | ATCGAT | 1 cut(s) | 4044 |
| Bsu36I | CCTNAGG | 2 cut(s) | 4522, 4681 |
| BsuI | GTATCC | 1 cut(s) | 6004 |
| BsuRI | GGCC | 8 cut(s) | 42, 381, 1109, 1910, 2108, 2141, 2735, 6615 |
| BsuTUI | ATCGAT | 1 cut(s) | 4044 |
| BtgZI | GCGATG | 2 cut(s) | 6575, 7099 |
| BtrI | CACGTC | 3 cut(s) | 1881, 3089, 3139 |
| BtsI | GCAGTG | 6 cut(s) | 91, 396, 873, 1461, 5769, 5995 |
| BveI | ACCTGC | 1 cut(s) | 181 |
| CaiI | CAGNNNCTG | 5 cut(s) | 311, 356, 1421, 3481, 4967 |
| CciI | TCATGA | 2 cut(s) | 2560, 5919 |
| CfoI | GCGC | 5 cut(s) | 634, 1699, 2469, 2960, 5851 |
| Cfr10I | RCCGGY | 1 cut(s) | 3782 |
| Cfr13I | GGNCC | 9 cut(s) | 265, 380, 857, 1108, 1445, 1960, 2191, 6508, 7370 |
| ClaI | ATCGAT | 1 cut(s) | 4044 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2376, 2411 |
| DraIII | CACNNNGTG | 1 cut(s) | 6969 |
| DriI | GACNNNNNGTC | 3 cut(s) | 664, 4087, 7368 |
| EaeI | YGGCCR | 3 cut(s) | 40, 2733, 6613 |
| Eam1104I | CTCTTC | 6 cut(s) | 496, 973, 1761, 3645, 5454, 6842 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 664, 4087, 7368 |
| EarI | CTCTTC | 6 cut(s) | 496, 973, 1761, 3645, 5454, 6842 |
| EciI | GGCGGA | 1 cut(s) | 3296 |
| Ecl136II | GAGCTC | 3 cut(s) | 1954, 2185, 5917 |
| Eco130I | CCWWGG | 6 cut(s) | 833, 3393, 4419, 4578, 5499, 6528 |
| Eco147I | AGGCCT | 2 cut(s) | 1910, 2141 |
| Eco24I | GRGCYC | 3 cut(s) | 1956, 2187, 5919 |
| Eco31I | GGTCTC | 4 cut(s) | 235, 4591, 4721, 5456 |
| Eco32I | GATATC | 2 cut(s) | 3871, 4865 |
| Eco47I | GGWCC | 7 cut(s) | 265, 857, 1445, 1960, 2191, 6508, 7370 |
| Eco47III | AGCGCT | 1 cut(s) | 2959 |
| Eco53kI | GAGCTC | 3 cut(s) | 1954, 2185, 5917 |
| Eco81I | CCTNAGG | 2 cut(s) | 4522, 4681 |
| Eco88I | CYCGRG | 2 cut(s) | 1326, 5843 |
| EcoICRI | GAGCTC | 3 cut(s) | 1954, 2185, 5917 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1960, 2191, 7370 |
| EcoRI | GAATTC | 5 cut(s) | 343, 598, 1408, 1663, 2476 |
| EcoRII | CCWGG | 5 cut(s) | 93, 3827, 4779, 5149, 5454 |
| EcoRV | GATATC | 2 cut(s) | 3871, 4865 |
| EcoT14I | CCWWGG | 6 cut(s) | 833, 3393, 4419, 4578, 5499, 6528 |
| EcoT22I | ATGCAT | 3 cut(s) | 1693, 1815, 4350 |
| EcoT38I | GRGCYC | 3 cut(s) | 1956, 2187, 5919 |
| ErhI | CCWWGG | 6 cut(s) | 833, 3393, 4419, 4578, 5499, 6528 |
| Esp3I | CGTCTC | 1 cut(s) | 264 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3279, 3311, 4923, 4955 |
| FaqI | GGGAC | 8 cut(s) | 535, 572, 843, 1012, 1431, 1600, 3421, 7356 |
| FauI | CCCGC | 3 cut(s) | 3543, 6262, 7269 |
| FbaI | TGATCA | 3 cut(s) | 1711, 2710, 4249 |
| FblI | GTMKAC | 2 cut(s) | 2798, 5141 |
| FriOI | GRGCYC | 3 cut(s) | 1956, 2187, 5919 |
| GlaI | GCGC | 5 cut(s) | 633, 1698, 2468, 2959, 5850 |
| GsuI | CTGGAG | 6 cut(s) | 791, 1080, 1268, 1668, 3218, 4079 |
| HaeII | RGCGCY | 2 cut(s) | 2470, 2961 |
| HaeIII | GGCC | 8 cut(s) | 42, 381, 1109, 1910, 2108, 2141, 2735, 6615 |
| HapII | CCGG | 2 cut(s) | 2492, 3783 |
| HhaI | GCGC | 5 cut(s) | 634, 1699, 2469, 2960, 5851 |
| Hin6I | GCGC | 5 cut(s) | 632, 1697, 2467, 2958, 5849 |
| HinP1I | GCGC | 5 cut(s) | 632, 1697, 2467, 2958, 5849 |
| HincII | GTYRAC | 8 cut(s) | 316, 1381, 2083, 2314, 2539, 2926, 4111, 5056 |
| HindII | GTYRAC | 8 cut(s) | 316, 1381, 2083, 2314, 2539, 2926, 4111, 5056 |
| HpaI | GTTAAC | 2 cut(s) | 2926, 4111 |
| HpaII | CCGG | 2 cut(s) | 2492, 3783 |
| HpyCH4IV | ACGT | 8 cut(s) | 1045, 1880, 2073, 2304, 3088, 3138, 5071, 6429 |
| HpySE526I | ACGT | 8 cut(s) | 1045, 1880, 2073, 2304, 3088, 3138, 5071, 6429 |
| HspAI | GCGC | 5 cut(s) | 632, 1697, 2467, 2958, 5849 |
| KflI | GGGWCCC | 1 cut(s) | 7370 |
| Ksp22I | TGATCA | 3 cut(s) | 1711, 2710, 4249 |
| KspAI | GTTAAC | 2 cut(s) | 2926, 4111 |
| LguI | GCTCTTC | 2 cut(s) | 5454, 6842 |
| LmnI | GCTCC | 6 cut(s) | 137, 3184, 4027, 6454, 6601, 6694 |
| MaeII | ACGT | 8 cut(s) | 1045, 1880, 2073, 2304, 3088, 3138, 5071, 6429 |
| MbiI | CCGCTC | 1 cut(s) | 3550 |
| MfeI | CAATTG | 3 cut(s) | 2363, 3065, 6009 |
| MflI | RGATCY | 8 cut(s) | 2406, 2626, 3170, 3654, 5509, 6220, 7026, 7174 |
| MhlI | GDGCHC | 9 cut(s) | 396, 1040, 1461, 1956, 2187, 5763, 5919, 6974, 7080 |
| MlsI | TGGCCA | 2 cut(s) | 2735, 6615 |
| MluNI | TGGCCA | 2 cut(s) | 2735, 6615 |
| MmeI | TCCRAC | 7 cut(s) | 2400, 3915, 4729, 4794, 5298, 6196, 6534 |
| Mox20I | TGGCCA | 2 cut(s) | 2735, 6615 |
| Mph1103I | ATGCAT | 3 cut(s) | 1693, 1815, 4350 |
| MroXI | GAANNNNTTC | 5 cut(s) | 2427, 2892, 3291, 5639, 7334 |
| MscI | TGGCCA | 2 cut(s) | 2735, 6615 |
| MslI | CAYNNNNRTG | 8 cut(s) | 1902, 2100, 2331, 3243, 4353, 4701, 5862, 6126 |
| Msp20I | TGGCCA | 2 cut(s) | 2735, 6615 |
| MspA1I | CMGCKG | 4 cut(s) | 2444, 4709, 5777, 6353 |
| MspCI | CTTAAG | 4 cut(s) | 3524, 4387, 4546, 6949 |
| MspI | CCGG | 2 cut(s) | 2492, 3783 |
| MspR9I | CCNGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| MunI | CAATTG | 3 cut(s) | 2363, 3065, 6009 |
| Mva1269I | GAATGC | 1 cut(s) | 1873 |
| MvaI | CCWGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| NheI | GCTAGC | 2 cut(s) | 2954, 5464 |
| NlaIV | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7371, 7372 |
| NmeAIII | GCCGAG | 2 cut(s) | 365, 842 |
| NsiI | ATGCAT | 3 cut(s) | 1693, 1815, 4350 |
| NspI | RCATGY | 8 cut(s) | 1118, 1706, 2099, 2330, 2885, 3056, 4006, 6153 |
| PaeI | GCATGC | 1 cut(s) | 6153 |
| PagI | TCATGA | 2 cut(s) | 2560, 5919 |
| PceI | AGGCCT | 2 cut(s) | 1910, 2141 |
| PciI | ACATGT | 2 cut(s) | 2095, 2881 |
| PciSI | GCTCTTC | 2 cut(s) | 5454, 6842 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 666 |
| PctI | GAATGC | 1 cut(s) | 1873 |
| PdmI | GAANNNNTTC | 5 cut(s) | 2427, 2892, 3291, 5639, 7334 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 6709 |
| PfoI | TCCNGGA | 2 cut(s) | 3827, 5454 |
| Ppu21I | YACGTR | 1 cut(s) | 1046 |
| PpuMI | RGGWCCY | 3 cut(s) | 1960, 2191, 7370 |
| PscI | ACATGT | 2 cut(s) | 2095, 2881 |
| PshAI | GACNNNNGTC | 2 cut(s) | 4241, 5724 |
| PshBI | ATTAAT | 4 cut(s) | 732, 1209, 1797, 5826 |
| Psp124BI | GAGCTC | 3 cut(s) | 1956, 2187, 5919 |
| Psp1406I | AACGTT | 1 cut(s) | 5071 |
| Psp5II | RGGWCCY | 3 cut(s) | 1960, 2191, 7370 |
| Psp6I | CCWGG | 5 cut(s) | 93, 3827, 4779, 5149, 5454 |
| PspGI | CCWGG | 5 cut(s) | 93, 3827, 4779, 5149, 5454 |
| PspN4I | GGNNCC | 8 cut(s) | 382, 859, 1447, 1961, 2192, 4029, 7371, 7372 |
| PspPI | GGNCC | 9 cut(s) | 265, 380, 857, 1108, 1445, 1960, 2191, 6508, 7370 |
| PspPPI | RGGWCCY | 3 cut(s) | 1960, 2191, 7370 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 6564, 6596 |
| PstI | CTGCAG | 7 cut(s) | 178, 352, 1417, 3012, 4308, 5776, 6912 |
| PstNI | CAGNNNCTG | 5 cut(s) | 311, 356, 1421, 3481, 4967 |
| PsuI | RGATCY | 8 cut(s) | 2406, 2626, 3170, 3654, 5509, 6220, 7026, 7174 |
| PvuII | CAGCTG | 4 cut(s) | 2444, 4709, 5777, 6353 |
| RseI | CAYNNNNRTG | 8 cut(s) | 1902, 2100, 2331, 3243, 4353, 4701, 5862, 6126 |
| SacI | GAGCTC | 3 cut(s) | 1956, 2187, 5919 |
| SapI | GCTCTTC | 2 cut(s) | 5454, 6842 |
| Sau96I | GGNCC | 9 cut(s) | 265, 380, 857, 1108, 1445, 1960, 2191, 6508, 7370 |
| ScaI | AGTACT | 5 cut(s) | 517, 994, 1582, 4607, 7134 |
| ScrFI | CCNGG | 5 cut(s) | 95, 3829, 4781, 5151, 5456 |
| SduI | GDGCHC | 9 cut(s) | 396, 1040, 1461, 1956, 2187, 5763, 5919, 6974, 7080 |
| SinI | GGWCC | 7 cut(s) | 265, 857, 1445, 1960, 2191, 6508, 7370 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 1902, 2100, 2331, 3243, 4353, 4701, 5862, 6126 |
| SpeI | ACTAGT | 4 cut(s) | 362, 1427, 2345, 6155 |
| SphI | GCATGC | 1 cut(s) | 6153 |
| SseBI | AGGCCT | 2 cut(s) | 1910, 2141 |
| SsiI | CCGC | 7 cut(s) | 227, 3281, 3550, 6255, 6495, 6893, 7276 |
| SspI | AATATT | 4 cut(s) | 730, 1207, 1795, 2179 |
| SstI | GAGCTC | 3 cut(s) | 1956, 2187, 5919 |
| StuI | AGGCCT | 2 cut(s) | 1910, 2141 |
| StyD4I | CCNGG | 5 cut(s) | 93, 3827, 4779, 5149, 5454 |
| StyI | CCWWGG | 6 cut(s) | 833, 3393, 4419, 4578, 5499, 6528 |
| TaiI | ACGT | 8 cut(s) | 1048, 1883, 2076, 2307, 3091, 3141, 5074, 6432 |
| TaqI | TCGA | 8 cut(s) | 1125, 2021, 2252, 3999, 4044, 4754, 5880, 7066 |
| TauI | GCSGC | 1 cut(s) | 6498 |
| TspGWI | ACGGA | 7 cut(s) | 257, 288, 658, 1353, 1723, 5939, 6674 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 6709 |
| Vha464I | CTTAAG | 4 cut(s) | 3524, 4387, 4546, 6949 |
| VneI | GTGCAC | 3 cut(s) | 5759, 6970, 7076 |
| VpaK11BI | GGWCC | 7 cut(s) | 265, 857, 1445, 1960, 2191, 6508, 7370 |
| VspI | ATTAAT | 4 cut(s) | 732, 1209, 1797, 5826 |
| XbaI | TCTAGA | 2 cut(s) | 2848, 4867 |
| XceI | RCATGY | 8 cut(s) | 1118, 1706, 2099, 2330, 2885, 3056, 4006, 6153 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 6982 |
| XmiI | GTMKAC | 2 cut(s) | 2798, 5141 |
| XmnI | GAANNNNTTC | 5 cut(s) | 2427, 2892, 3291, 5639, 7334 |
| ZrmI | AGTACT | 5 cut(s) | 517, 994, 1582, 4607, 7134 |
| Zsp2I | ATGCAT | 3 cut(s) | 1693, 1815, 4350 |