Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

15431350 .. 15438678

Gene Structure 7329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3609 bp

ATGGCTAATCTGTTGCAAAGGCTTCGTAGACGAACCGGGCCAAAGCCAGATTATATTGAAGACAAGTTGGATGAATACATTCGTGAAGAACAAGTTGAAGAAACAGGCGGAAGTAACCAGGATTGTCCTCTTGGCGAGATTGAAAAGATTTTGGACCGTGAATGGCGTCCTACTGCATCTAACAATCCGAATTCTTCTGACAACGGGACACCAACCCTAGTTGTCGTGAAACAATATCTTGTGAAGTGGAAGGGGTTATCGTACTTGCACTGCTCTTGGGTGCCCGAGCAGGAGTTCGAGAAGGCTTACAAGTCCCATCCTCATTTAAAACTAAAATTAAGGGTGACCAGGTTTAACGCTGCTATGGACGTATTCATCGCTGAGAACGGAGCTCATGAGTTTATCGCCATTCGTCCTGAATGGAAAACTGTTGACCGGATTATTGCTTGCCGGGAAGGAGATGATGGGGAGGAGTATCTGGTGAAGTACAAAGAACTTTCTTACAGAAATAGTTACTGGGAATCTGAATCTGACATCTCAGATTTCCAGAATGAAATCCAAAGGTTTAAGGATATAAACTCTAGCTCTCGTAGAGATAAATATGTCGAAAATGAGAGAAATCGAGAGGAATTCAAACAGTTTGATCTTACTCCTGAATTTCTTACAGGCACATTGCATACATACCAGCTCGAAGGGCTGAATTTCCTAAGGTATTCATGGTCCAAGAAAACCAATGTAATCCTTGCGGATGAAATGGGACTAGGCAAAACTATTCAGAGCATTGCCTTCTTGGCCTCTTTGTTCGAGGAAAACTTATCTCCTCATCTAGTTGTTGCTCCTCTCTCAACCATCCGTAACTGGGAGAGGGAATTTGCCACCTGGGCACCACATATGAATGTGGTTATGTACACTGGGGATTCGGAAGCACGTGATGTTATATGGGAACATGAGTTCTACTTCTCTGAAGGGCGTAAAAGTAAGTTTGATGTCTTGCTCACGACGTATGAGATGGTTCACCCAGGGATATCAGTTCTGAGTCCAATCAAGTGGACGTGCATGATTATTGATGAAGGCCATCGGTTGAAAAATCAGAAGTCAAAGCTGTACTCTTCATTGAGTCAGTTTACAAGTAAGCATATCGTTCTGTTGACCGGAACACCACTTCAGAACAACTTGAATGAACTTTTCGCTCTGATGCATTTTCTTGATGCGGACAAGTTTGGGAGTTTGGAGAAGTTTCAAGATATAAATAAAGAGGAGCAGATTTCAAGACTCCACCAAATGTTGGCTCCGCATCTGCTCAGAAGGTTAAAGAAAGACGTGCTCAAGGATAAGGTGCCCCCAAAGAAGGAGCTCATTTTGCGTGTTGATATGAGCAGCCAGCAAAAAGAAGTGTACAAAGCTGTTATTACCAATAATTATCAAGTCTTGACAAAGAAACGAGATGCTAAAATATCTAACGTGCTAATGAAATTACGCCAAGTTTGCTCTCATCCGTATCTGTTACCAGACTTTGAGCCAAGATTTGAAGACGCAAATGAAGCTTTTACAAAACTATTGGAAGCTTCCGGAAAGTTGCAACTGTTAGACAAAATGATGGTCAAACTCAAAGAGCAGGGGCACAGAGTGCTAATCTATACCCAATTCCAACACACCCTTTACCTTTTGGAAGACTACTTCACTTTCAAGAATTGGAATTATGAACGGATTGATGGAAAGATCAGTGGACCTGAGAGGCAAGTAAGAATAGATCGGTTTAATGCAGAAAACTCGAACCGGTTCTGTTTTTTGCTCAGTACAAGAGCTGGTGGAATAGGGATAAACCTTGCAACAGCTGATACAGTCATCATTTATGACAGTGATTGGAATCCTCATGCTGATCTCCAGGCTATGGCTAGAGTTCATCGGCTTGGCCAAACAAATAAGGTAATGATCTACAGACTGATTCACAAAGGTACTGTAGAAGAACGGATGATGGAGATAACCAAGAACAAGATGCTTCTAGAGCATCTCGTCGTGGGAAAACAACATCTTTGTCAGGACGAGTTAGATGACATCATCAAATATGGTTCCAAGGAACTTTTCTCTGAAGAGAATGATGAAGCAGGGAGGTCTGGAAAAATCCATTACGATGATGCTGCTATCGAACAGTTGCTAGATCGTAATCATGTAGATGCTGTGGAGGTCTCACTGGATGATGAGGAGGAAACTGATTTTTTAAAGAATTTCAAGGTGGCTAGTTTTGAGTATGTAGATGATGAAAATGAGGCTGCAGCATTAGAGGAGGCACAAGCTATAGAAAACAATTCTTCAGTAAGAAATGCTGATAGAACAAGTCACTGGAAAGATTTGCTGAAAGACAAATATGAAGTGCAACAAGCTGAGGAGCTCAGTGCTCTTGGAAAGAGGAAGAGAAACGGCAAGCAGGTGATGTATGCTGAAGATGATCTTGATGGTTTAGAAGAAATCTCTGATGAGGAGGACGAATATTGTCTTGATGATTTAAAAGTGACCTCTGATGAGGAGGAGGAAGCAGATGAACCCGAAGCAGCTCGACAGAGAAAGCCGAGGACGGTTACAAGGCCTTACAGAAAAAGGGCTCGCGATAATTCGGAGGAAATACCTTTGATGGAAGGCGAAGGGAGATATCTCATGGTGCTGGGATTTAACGAGACTGAGAGGGATATATTTTTACGTACGTTTAAGAGGTATGGAGCTGGAAACTTTGATTGGAAGGAGTTTGTTAATCCCTTATACATGAAGACCTATGACGAGATAAATAAGTATGGAATCTTATTTTTGAAACACATTGCCGAAAACCCTACCGATAATTCTACAAATTTTAAAGTTATTACGGCAATGGTCTATGCAGATGGAGTTCCCAAAGAAGGGATAAGCAGTGACGAGCTACTAGTGAGCATGACTTTTATGATGCTAGTAAAGGAGAAGTGTCAATTTTTGGACAACCATCCGACAGCACCTGTTTTCTCTAACTACGTCATCAGTAAGTACAATTTGAGAAATGGAGCATTTTCTAAGGAAGAACATGATAGGATACTGATTCCTGCTGTTTCCAAGCATGGCTATGGTAGATGGGTGGCCATCGTTGAAGACGAAGAGATAGGGTTCCAAGAGGTTGCCTGCAAAGACCTGAATATCCCTTTCCCTCCTGATACTAAATCTGCTCGTAAAAGAATTTGTGACCATGTGGGAAAACGGGTTAAGAAGATGGAGGATGCCATAAAGTATGAGTACGCAGAAAAGATACTTGCTGAACAAGCAAAAGCTGAAACAAAGGGAACAAGCTTTGTTGATGCAGAAAAAGAAATGCTTAAGAATGATCCCATCACTTCAAAAAAAAATTCTGCAACTGCCGTTGACAACAAGCAAGGCAGAGTTGAAATGGCTCAATCATACGATCAGAGTGTTAATGAGAAGTCAGGTGAGTCATTCCAGACATATTTAGATATTCAACCGCTGAATCGAATGCCGAGGGAGAGCTTTAAGCCTCTGGAACCTATCAATGAGGAAATAAGCACTAGGCTAAGCGTTGGGACAGATCATGATGTAGAGATGGATGCAGCGGATAACATCATTGTGCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1202

Amino Acids

139.41

Weight (kDa)

5.35

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chromo	PF00385	46 - 102	1.1e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	143 - 191	7.4e-14	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	225 - 387	1.5e-10	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	228 - 501	1.6e-78	SNF2-related domain
HDA2-3	PF11496	454 - 666	4.8e-14	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	525 - 638	3e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	760 - 815	9.7e-19	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	856 - 990	2.7e-58	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2416
Acc36I	ACCTGC	1 cut(s)	2416
AccB1I	GGYRCC	3 cut(s)	280, 883, 1336
AccB7I	CCANNNNNTGG	2 cut(s)	1285, 1891
AccI	GTMKAC	1 cut(s)	28
AccII	CGCG	1 cut(s)	2604
AccIII	TCCGGA	1 cut(s)	1568
AciI	CCGC	6 cut(s)	108, 746, 1211, 1292, 3476, 3584
AclWI	GGATC	1 cut(s)	3335
AcoI	YGGCCR	2 cut(s)	1912, 3099
AcsI	RAATTY	9 cut(s)	190, 629, 656, 700, 869, 2224, 2839, 3195, 3361
AcuI	CTGAAG	5 cut(s)	984, 1148, 2109, 2295, 2460
AcvI	CACGTG	1 cut(s)	929
AcyI	GRCGYC	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	1627
AfiI	CCNNNNNNNGG	6 cut(s)	859, 1285, 1348, 1891, 2888, 2889
AflII	CTTAAG	1 cut(s)	3332
AgeI	ACCGGT	1 cut(s)	1776
AhlI	ACTAGT	1 cut(s)	2911
AjiI	CACGTC	2 cut(s)	1053, 1321
AjnI	CCWGG	5 cut(s)	117, 347, 878, 1018, 1884
AjuI	GAANNNNNNNTTGG	4 cut(s)	2066, 2098, 2713, 2745
AloI	GAACNNNNNNTCC	2 cut(s)	935, 967
Alw21I	GWGCWC	5 cut(s)	394, 1326, 1356, 2391, 2398
Alw26I	GTCTC	2 cut(s)	2191, 2666
AlwI	GGATC	1 cut(s)	3335
AlwNI	CAGNNNCTG	1 cut(s)	2981
Ama87I	CYCGRG	1 cut(s)	284
Aor13HI	TCCGGA	1 cut(s)	1568
AoxI	GGCC	6 cut(s)	38, 792, 1072, 1912, 2582, 3099
ApeKI	GCWGC	7 cut(s)	359, 1377, 2138, 2270, 2273, 2549, 3581
ApoI	RAATTY	9 cut(s)	190, 629, 656, 700, 869, 2224, 2839, 3195, 3361
ArsI	GACNNNNNNTTYG	2 cut(s)	1584, 1616
AsiGI	ACCGGT	1 cut(s)	1776
Asp700I	GAANNNNTTC	2 cut(s)	78, 1778
AspS9I	GGNCC	4 cut(s)	38, 154, 720, 1727
AsuC2I	CCSGG	2 cut(s)	37, 452
AsuHPI	GGTGA	5 cut(s)	355, 493, 1007, 2440, 3455
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	154, 720, 1727
AxyI	CCTNAGG	1 cut(s)	707
BaeGI	GKGCMC	4 cut(s)	285, 886, 1341, 1623
BalI	TGGCCA	2 cut(s)	1914, 3101
BanI	GGYRCC	3 cut(s)	280, 883, 1336
BanII	GRGCYC	4 cut(s)	394, 1356, 2391, 2602
BbrPI	CACGTG	1 cut(s)	929
BbsI	GAAGAC	5 cut(s)	66, 1536, 1677, 2768, 3117
Bbv12I	GWGCWC	5 cut(s)	394, 1326, 1356, 2391, 2398
BbvCI	CCTCAGC	1 cut(s)	2382
BbvI	GCAGC	7 cut(s)	346, 1389, 2125, 2257, 2285, 2561, 3593
BceAI	ACGGC	3 cut(s)	2434, 2871, 3359
BcgI	CGANNNNNNTGC	6 cut(s)	5, 39, 1752, 1786, 2120, 2154
BciT130I	CCWGG	5 cut(s)	119, 349, 880, 1020, 1886
BciVI	GTATCC	1 cut(s)	3048
BcnI	CCSGG	2 cut(s)	37, 452
BcoDI	GTCTC	2 cut(s)	2191, 2666
BcuI	ACTAGT	1 cut(s)	2911
BfmI	CTRYAG	4 cut(s)	1936, 1959, 2271, 2295
BfrI	CTTAAG	1 cut(s)	3332
BfuAI	ACCTGC	1 cut(s)	2416
BfuI	GTATCC	1 cut(s)	3048
BglI	GCCNNNNNGGC	2 cut(s)	791, 881
BisI	GCNGC	7 cut(s)	360, 1378, 2139, 2271, 2274, 2550, 3582
BlpI	GCTNAGC	1 cut(s)	3545
BlsI	GCNGC	7 cut(s)	361, 1379, 2140, 2272, 2275, 2551, 3583
Bme1390I	CCNGG	7 cut(s)	37, 119, 349, 452, 880, 1020, 1886
Bme18I	GGWCC	3 cut(s)	154, 720, 1727
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	2 cut(s)	1053, 1321
BmgT120I	GGNCC	4 cut(s)	38, 154, 720, 1727
BmiI	GGNNCC	7 cut(s)	282, 885, 1290, 1338, 2071, 3128, 3516
BmrFI	CCNGG	7 cut(s)	37, 119, 349, 452, 880, 1020, 1886
BmrI	ACTGGG	3 cut(s)	526, 868, 921
BmuI	ACTGGG	3 cut(s)	526, 868, 921
BpiI	GAAGAC	5 cut(s)	66, 1536, 1677, 2768, 3117
BpmI	CTGGAG	1 cut(s)	1868
Bpu10I	CCTNAGC	1 cut(s)	2382
Bpu1102I	GCTNAGC	1 cut(s)	3545
BpuEI	CTTGAG	1 cut(s)	1310
BpuMI	CCSGG	2 cut(s)	37, 452
BsaAI	YACGTR	2 cut(s)	929, 2696
BsaBI	GATNNNNATC	2 cut(s)	1866, 2163
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	2191
BsaJI	CCNNGG	6 cut(s)	879, 1018, 1019, 2073, 2567, 3491
BsaWI	WCCGGW	4 cut(s)	435, 1151, 1568, 1776
Bsc4I	CCNNNNNNNGG	6 cut(s)	859, 1285, 1348, 1891, 2888, 2889
Bse118I	RCCGGY	1 cut(s)	1776
Bse1I	ACTGG	5 cut(s)	521, 863, 916, 2196, 2345
Bse21I	CCTNAGG	1 cut(s)	707
Bse3DI	GCAATG	4 cut(s)	671, 780, 2808, 2865
Bse8I	GATNNNNATC	2 cut(s)	1866, 2163
BseAI	TCCGGA	1 cut(s)	1568
BseBI	CCWGG	5 cut(s)	119, 349, 880, 1020, 1886
BseDI	CCNNGG	6 cut(s)	879, 1018, 1019, 2073, 2567, 3491
BseJI	GATNNNNATC	2 cut(s)	1866, 2163
BseLI	CCNNNNNNNGG	6 cut(s)	859, 1285, 1348, 1891, 2888, 2889
BseMI	GCAATG	4 cut(s)	671, 780, 2808, 2865
BseMII	CTCAG	9 cut(s)	372, 552, 1025, 1315, 1722, 1807, 2373, 2404, 2667
BseNI	ACTGG	5 cut(s)	521, 863, 916, 2196, 2345
BseSI	GKGCMC	4 cut(s)	285, 886, 1341, 1623
BseXI	GCAGC	7 cut(s)	346, 1389, 2125, 2257, 2285, 2561, 3593
BseYI	CCCAGC	1 cut(s)	2659
Bsh1236I	CGCG	1 cut(s)	2604
BshFI	GGCC	6 cut(s)	40, 794, 1074, 1914, 2584, 3101
BshNI	GGYRCC	3 cut(s)	280, 883, 1336
BshTI	ACCGGT	1 cut(s)	1776
BsiHKAI	GWGCWC	5 cut(s)	394, 1326, 1356, 2391, 2398
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	6 cut(s)	36, 436, 451, 1152, 1569, 1777
BsiWI	CGTACG	1 cut(s)	2696
BslFI	GGGAC	4 cut(s)	220, 298, 771, 3568
BslI	CCNNNNNNNGG	6 cut(s)	859, 1285, 1348, 1891, 2888, 2889
BsmAI	GTCTC	2 cut(s)	2191, 2666
BsmFI	GGGAC	4 cut(s)	220, 298, 771, 3568
BsmI	GAATGC	1 cut(s)	3492
BsnI	GGCC	6 cut(s)	40, 794, 1074, 1914, 2584, 3101
Bso31I	GGTCTC	1 cut(s)	2191
BsoBI	CYCGRG	1 cut(s)	284
Bsp13I	TCCGGA	1 cut(s)	1568
Bsp1407I	TGTACA	2 cut(s)	906, 1395
Bsp1720I	GCTNAGC	1 cut(s)	3545
Bsp68I	TCGCGA	1 cut(s)	2604
BspACI	CCGC	6 cut(s)	108, 746, 1211, 1292, 3476, 3584
BspANI	GGCC	6 cut(s)	40, 794, 1074, 1914, 2584, 3101
BspCNI	CTCAG	9 cut(s)	373, 551, 1026, 1314, 1723, 1806, 2374, 2403, 2668
BspEI	TCCGGA	1 cut(s)	1568
BspFNI	CGCG	1 cut(s)	2604
BspHI	TCATGA	2 cut(s)	394, 3562
BspLI	GGNNCC	7 cut(s)	282, 885, 1290, 1338, 2071, 3128, 3516
BspMAI	CTGCAG	1 cut(s)	2275
BspMI	ACCTGC	1 cut(s)	2416
BspPI	GGATC	1 cut(s)	3335
BspT107I	GGYRCC	3 cut(s)	280, 883, 1336
BspTI	CTTAAG	1 cut(s)	3332
BspTNI	GGTCTC	1 cut(s)	2191
BsrDI	GCAATG	4 cut(s)	671, 780, 2808, 2865
BsrFI	RCCGGY	1 cut(s)	1776
BsrGI	TGTACA	2 cut(s)	906, 1395
BsrI	ACTGG	5 cut(s)	521, 863, 916, 2196, 2345
BssAI	RCCGGY	1 cut(s)	1776
BssECI	CCNNGG	6 cut(s)	879, 1018, 1019, 2073, 2567, 3491
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	2073
Bst2UI	CCWGG	5 cut(s)	119, 349, 880, 1020, 1886
Bst4CI	ACNGT	9 cut(s)	158, 430, 639, 1584, 1843, 1859, 1960, 2151, 2575
Bst6I	CTCTTC	4 cut(s)	1114, 2085, 2405, 3111
BstACI	GRCGYC	1 cut(s)	166
BstAFI	CTTAAG	1 cut(s)	3332
BstAPI	GCANNNNNTGC	1 cut(s)	1627
BstAUI	TGTACA	2 cut(s)	906, 1395
BstBAI	YACGTR	2 cut(s)	929, 2696
BstC8I	GCNNGC	5 cut(s)	448, 1382, 2423, 2602, 3142
BstEII	GGTNACC	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	2604
BstMAI	GTCTC	2 cut(s)	2191, 2666
BstMWI	GCNNNNNNNGC	9 cut(s)	694, 791, 881, 1360, 1485, 1541, 1627, 2005, 3278
BstNI	CCWGG	5 cut(s)	119, 349, 880, 1020, 1886
BstPI	GGTNACC	1 cut(s)	343
BstSCI	CCNGG	7 cut(s)	35, 117, 347, 450, 878, 1018, 1884
BstSFI	CTRYAG	4 cut(s)	1936, 1959, 2271, 2295
BstSLI	GKGCMC	4 cut(s)	285, 886, 1341, 1623
BstSNI	TACGTA	1 cut(s)	2696
BstUI	CGCG	1 cut(s)	2604
BstV1I	GCAGC	7 cut(s)	346, 1389, 2125, 2257, 2285, 2561, 3593
BstV2I	GAAGAC	5 cut(s)	66, 1536, 1677, 2768, 3117
BstXI	CCANNNNNNTGG	1 cut(s)	1047
Bsu36I	CCTNAGG	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	3048
BsuRI	GGCC	6 cut(s)	40, 794, 1074, 1914, 2584, 3101
BtgZI	GCGATG	1 cut(s)	361
BtrI	CACGTC	2 cut(s)	1053, 1321
BtsI	GCAGTG	2 cut(s)	268, 2905
BtsIMutI	CAGTG	8 cut(s)	268, 909, 1729, 1864, 2189, 2338, 2398, 2905
BtuMI	TCGCGA	1 cut(s)	2604
BveI	ACCTGC	1 cut(s)	2416
Cac8I	GCNNGC	5 cut(s)	448, 1382, 2423, 2602, 3142
CaiI	CAGNNNCTG	1 cut(s)	2981
CciI	TCATGA	2 cut(s)	394, 3562
Cfr10I	RCCGGY	1 cut(s)	1776
Cfr13I	GGNCC	4 cut(s)	38, 154, 720, 1727
CseI	GACGC	2 cut(s)	155, 1541
CsiI	ACCWGGT	1 cut(s)	347
CspAI	ACCGGT	1 cut(s)	1776
DraI	TTTAAA	4 cut(s)	327, 2220, 2505, 2845
DraIII	CACNNNGTG	1 cut(s)	1627
EaeI	YGGCCR	2 cut(s)	1912, 3099
Eam1104I	CTCTTC	4 cut(s)	1114, 2085, 2405, 3111
EarI	CTCTTC	4 cut(s)	1114, 2085, 2405, 3111
EciI	GGCGGA	1 cut(s)	123
Ecl136II	GAGCTC	3 cut(s)	392, 1354, 2389
Eco105I	TACGTA	1 cut(s)	2696
Eco130I	CCWWGG	1 cut(s)	2073
Eco147I	AGGCCT	1 cut(s)	2584
Eco24I	GRGCYC	4 cut(s)	394, 1356, 2391, 2602
Eco31I	GGTCTC	1 cut(s)	2191
Eco32I	GATATC	2 cut(s)	1026, 2648
Eco47I	GGWCC	3 cut(s)	154, 720, 1727
Eco53kI	GAGCTC	3 cut(s)	392, 1354, 2389
Eco57I	CTGAAG	5 cut(s)	984, 1148, 2109, 2295, 2460
Eco72I	CACGTG	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	343
EcoICRI	GAGCTC	3 cut(s)	392, 1354, 2389
EcoO65I	GGTNACC	1 cut(s)	343
EcoRI	GAATTC	2 cut(s)	190, 629
EcoRII	CCWGG	5 cut(s)	117, 347, 878, 1018, 1884
EcoRV	GATATC	2 cut(s)	1026, 2648
EcoT14I	CCWWGG	1 cut(s)	2073
EcoT22I	ATGCAT	1 cut(s)	1200
EcoT38I	GRGCYC	4 cut(s)	394, 1356, 2391, 2602
ErhI	CCWWGG	1 cut(s)	2073
FalI	AAGNNNNNCTT	4 cut(s)	2433, 2465, 3315, 3347
FaqI	GGGAC	4 cut(s)	220, 298, 771, 3568
FauNDI	CATATG	1 cut(s)	891
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	7 cut(s)	360, 1378, 2139, 2271, 2274, 2550, 3582
FriOI	GRGCYC	4 cut(s)	394, 1356, 2391, 2602
Fsp4HI	GCNGC	7 cut(s)	360, 1378, 2139, 2271, 2274, 2550, 3582
GluI	GCNGC	7 cut(s)	360, 1378, 2139, 2271, 2274, 2550, 3582
GsaI	CCCAGC	1 cut(s)	2663
GsuI	CTGGAG	1 cut(s)	1868
HaeIII	GGCC	6 cut(s)	40, 794, 1074, 1914, 2584, 3101
HapII	CCGG	6 cut(s)	36, 436, 451, 1152, 1569, 1777
HgaI	GACGC	2 cut(s)	155, 1541
Hin1I	GRCGYC	1 cut(s)	166
HincII	GTYRAC	3 cut(s)	433, 1149, 3379
HindII	GTYRAC	3 cut(s)	433, 1149, 3379
HindIII	AAGCTT	3 cut(s)	1542, 1563, 3304
HpaII	CCGG	6 cut(s)	36, 436, 451, 1152, 1569, 1777
HphI	GGTGA	5 cut(s)	355, 493, 1007, 2440, 3455
Hpy99I	CGWCG	2 cut(s)	1003, 2018
HpyCH4III	ACNGT	9 cut(s)	158, 430, 639, 1584, 1843, 1859, 1960, 2151, 2575
HpyCH4IV	ACGT	9 cut(s)	369, 928, 1001, 1052, 1320, 1461, 2695, 2699, 2997
HpyF10VI	GCNNNNNNNGC	9 cut(s)	694, 791, 881, 1360, 1485, 1541, 1627, 2005, 3278
HpySE526I	ACGT	9 cut(s)	369, 928, 1001, 1052, 1320, 1461, 2695, 2699, 2997
Hsp92I	GRCGYC	1 cut(s)	166
Kpn2I	TCCGGA	1 cut(s)	1568
LmnI	GCTCC	8 cut(s)	389, 841, 1258, 1294, 1351, 2386, 2714, 3026
Lsp1109I	GCAGC	7 cut(s)	346, 1389, 2125, 2257, 2285, 2561, 3593
MabI	ACCWGGT	1 cut(s)	347
MaeII	ACGT	9 cut(s)	369, 928, 1001, 1052, 1320, 1461, 2695, 2699, 2997
MlsI	TGGCCA	2 cut(s)	1914, 3101
MluNI	TGGCCA	2 cut(s)	1914, 3101
MlyI	GAGTC	4 cut(s)	1045, 1126, 1266, 3455
MmeI	TCCRAC	3 cut(s)	48, 1672, 2996
Mox20I	TGGCCA	2 cut(s)	1914, 3101
Mph1103I	ATGCAT	1 cut(s)	1200
MroI	TCCGGA	1 cut(s)	1568
MroXI	GAANNNNTTC	2 cut(s)	78, 1778
MscI	TGGCCA	2 cut(s)	1914, 3101
MslI	CAYNNNNRTG	5 cut(s)	894, 2130, 2172, 3084, 3596
Msp20I	TGGCCA	2 cut(s)	1914, 3101
MspA1I	CMGCKG	3 cut(s)	1835, 3478, 3584
MspCI	CTTAAG	1 cut(s)	3332
MspI	CCGG	6 cut(s)	36, 436, 451, 1152, 1569, 1777
MspR9I	CCNGG	7 cut(s)	37, 119, 349, 452, 880, 1020, 1886
Mva1269I	GAATGC	1 cut(s)	3492
MvaI	CCWGG	5 cut(s)	119, 349, 880, 1020, 1886
MvnI	CGCG	1 cut(s)	2604
MwoI	GCNNNNNNNGC	9 cut(s)	694, 791, 881, 1360, 1485, 1541, 1627, 2005, 3278
NciI	CCSGG	2 cut(s)	37, 452
NdeI	CATATG	1 cut(s)	891
NlaIV	GGNNCC	7 cut(s)	282, 885, 1290, 1338, 2071, 3128, 3516
NmeAIII	GCCGAG	2 cut(s)	2592, 3516
NmuCI	GTSAC	5 cut(s)	343, 2336, 2509, 2900, 3200
NruI	TCGCGA	1 cut(s)	2604
NsiI	ATGCAT	1 cut(s)	1200
PagI	TCATGA	2 cut(s)	394, 3562
PaqCI	CACCTGC	1 cut(s)	2416
PasI	CCCWGGG	1 cut(s)	1019
PceI	AGGCCT	1 cut(s)	2584
PcsI	WCGNNNNNNNCGW	1 cut(s)	3111
PctI	GAATGC	1 cut(s)	3492
PdmI	GAANNNNTTC	2 cut(s)	78, 1778
PfeI	GAWTC	8 cut(s)	521, 527, 917, 1867, 1945, 2790, 3061, 3481
Pfl23II	CGTACG	1 cut(s)	2696
PflMI	CCANNNNNTGG	2 cut(s)	1285, 1891
PinAI	ACCGGT	1 cut(s)	1776
PkrI	GCNGC	7 cut(s)	361, 1379, 2140, 2272, 2275, 2551, 3583
PleI	GAGTC	4 cut(s)	1044, 1125, 1266, 3454
PmaCI	CACGTG	1 cut(s)	929
PmlI	CACGTG	1 cut(s)	929
PpsI	GAGTC	4 cut(s)	1044, 1125, 1266, 3454
Ppu21I	YACGTR	2 cut(s)	929, 2696
Psp124BI	GAGCTC	3 cut(s)	394, 1356, 2391
Psp6I	CCWGG	5 cut(s)	117, 347, 878, 1018, 1884
PspCI	CACGTG	1 cut(s)	929
PspEI	GGTNACC	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	2659
PspGI	CCWGG	5 cut(s)	117, 347, 878, 1018, 1884
PspLI	CGTACG	1 cut(s)	2696
PspN4I	GGNNCC	7 cut(s)	282, 885, 1290, 1338, 2071, 3128, 3516
PspPI	GGNCC	4 cut(s)	38, 154, 720, 1727
PstI	CTGCAG	1 cut(s)	2275
PstNI	CAGNNNCTG	1 cut(s)	2981
PvuII	CAGCTG	1 cut(s)	1835
RruI	TCGCGA	1 cut(s)	2604
RseI	CAYNNNNRTG	5 cut(s)	894, 2130, 2172, 3084, 3596
SacI	GAGCTC	3 cut(s)	394, 1356, 2391
SatI	GCNGC	7 cut(s)	360, 1378, 2139, 2271, 2274, 2550, 3582
Sau96I	GGNCC	4 cut(s)	38, 154, 720, 1727
SchI	GAGTC	4 cut(s)	1045, 1126, 1266, 3455
ScrFI	CCNGG	7 cut(s)	37, 119, 349, 452, 880, 1020, 1886
SexAI	ACCWGGT	1 cut(s)	347
SfcI	CTRYAG	4 cut(s)	1936, 1959, 2271, 2295
SinI	GGWCC	3 cut(s)	154, 720, 1727
SmiMI	CAYNNNNRTG	5 cut(s)	894, 2130, 2172, 3084, 3596
SmlI	CTYRAG	2 cut(s)	1325, 3332
SmoI	CTYRAG	2 cut(s)	1325, 3332
SnaBI	TACGTA	1 cut(s)	2696
SpeI	ACTAGT	1 cut(s)	2911
SseBI	AGGCCT	1 cut(s)	2584
SsiI	CCGC	6 cut(s)	108, 746, 1211, 1292, 3476, 3584
SspI	AATATT	1 cut(s)	2489
SstI	GAGCTC	3 cut(s)	394, 1356, 2391
StuI	AGGCCT	1 cut(s)	2584
StyD4I	CCNGG	7 cut(s)	35, 117, 347, 450, 878, 1018, 1884
StyI	CCWWGG	1 cut(s)	2073
TaaI	ACNGT	9 cut(s)	158, 430, 639, 1584, 1843, 1859, 1960, 2151, 2575
TaiI	ACGT	9 cut(s)	372, 931, 1004, 1055, 1323, 1464, 2698, 2702, 3000
TaqI	TCGA	9 cut(s)	297, 606, 622, 690, 804, 1772, 2145, 2554, 3484
TatI	WGTACW	6 cut(s)	486, 906, 1104, 1395, 1796, 3009
TfiI	GAWTC	8 cut(s)	521, 527, 917, 1867, 1945, 2790, 3061, 3481
TscAI	CASTG	8 cut(s)	275, 916, 1729, 1864, 2196, 2345, 2398, 2905
TseFI	GTSAC	5 cut(s)	343, 2336, 2509, 2900, 3200
TseI	GCWGC	7 cut(s)	359, 1377, 2138, 2270, 2273, 2549, 3581
Tsp45I	GTSAC	5 cut(s)	343, 2336, 2509, 2900, 3200
TspGWI	ACGGA	5 cut(s)	402, 842, 1485, 1720, 1984
TspRI	CASTG	8 cut(s)	275, 916, 1729, 1864, 2196, 2345, 2398, 2905
Van91I	CCANNNNNTGG	2 cut(s)	1285, 1891
Vha464I	CTTAAG	1 cut(s)	3332
VpaK11BI	GGWCC	3 cut(s)	154, 720, 1727
XapI	RAATTY	9 cut(s)	190, 629, 656, 700, 869, 2224, 2839, 3195, 3361
XbaI	TCTAGA	1 cut(s)	2002
XmiI	GTMKAC	1 cut(s)	28
XmnI	GAANNNNTTC	2 cut(s)	78, 1778
Zsp2I	ATGCAT	1 cut(s)	1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.