Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024261.1

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2197

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024261.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 797 bp

ttgaacaaccattaacagactccccaaccttttcagatggtgtccctaaagaaggactcaggatacaagacgtacttgttcggatttctgttatgtctatgattcatcagaaagcaaagtttgcaacagaaaatccaggcgctcctttgtatgaagatgacatcatgttccgttacccaggactgaagggtagcaaatattggaaggagtatcatgatggaatattactgcgtgccgtattaaagcatggctatggaagatggcaagctattgttgatgacaaggacctggggattcaagaagttatttgtcaggagttgaatcttccttttatgaattttcctgtcccagggcaggttaaagcacaaaatactgaagtacctggaaacgctgctggaaatggtaatggaaatgacgtaggagaaaatgtagttcagggaaccattgatccagcaaaccaagctcaatcatatcaagagtcttctacgttgcatcattttagagatatgcaaagaagattggtagaatttatcaagcgaagagtgcttctcttggagaaaggcaacaatgcagaagcccagaaagaatactttgatgaattgtatgcaaatgagattgcggagcttgagaaggaaaccatggggacaaatcagccatacactggggagactgataagcaaatgggcgatcagttgccaagagttgaagaaatcggttcggaagaaattttagctgcagcttgtgacaacgatccagatcgtttaaaattgcctcagctttataatgaggtaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

264

Amino Acids

29.77

Weight (kDa)

4.76

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	661
AciI	CCGC	1 cut(s)	619
AclWI	GGATC	2 cut(s)	442, 745
AcsI	RAATTY	3 cut(s)	336, 526, 725
AcuI	CTGAAG	2 cut(s)	205, 395
AfaI	GTAC	2 cut(s)	74, 380
AfiI	CCNNNNNNNGG	4 cut(s)	52, 349, 354, 661
AgsI	TTSAA	4 cut(s)	4, 298, 321, 706
AjnI	CCWGG	5 cut(s)	135, 177, 287, 348, 381
AloI	GAACNNNNNNTCC	2 cut(s)	432, 464
AluBI	AGCT	6 cut(s)	268, 463, 624, 733, 739, 777
AluI	AGCT	6 cut(s)	268, 463, 624, 733, 739, 777
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	442, 745
ApeKI	GCWGC	3 cut(s)	391, 733, 736
ApoI	RAATTY	3 cut(s)	336, 526, 725
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	362, 395
BbsI	GAAGAC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	773
BbvI	GCAGC	3 cut(s)	378, 720, 748
BccI	CCATC	3 cut(s)	31, 211, 254
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	5 cut(s)	137, 179, 289, 350, 383
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	661
BfmI	CTRYAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	3 cut(s)	392, 734, 737
BlsI	GCNGC	3 cut(s)	393, 735, 738
Bme1390I	CCNGG	5 cut(s)	137, 179, 289, 350, 383
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	5 cut(s)	137, 179, 289, 350, 383
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	1 cut(s)	501
BmuI	ACTGGG	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
Bpu10I	CCTNAGC	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	755
BsaJI	CCNNGG	5 cut(s)	177, 288, 348, 349, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 349, 354, 661
Bse1I	ACTGG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	755
BseBI	CCWGG	5 cut(s)	137, 179, 289, 350, 383
BseDI	CCNNGG	5 cut(s)	177, 288, 348, 349, 638
BseJI	GATNNNNATC	1 cut(s)	755
BseLI	CCNNNNNNNGG	4 cut(s)	52, 349, 354, 661
BseMII	CTCAG	2 cut(s)	72, 787
BseNI	ACTGG	1 cut(s)	666
BseXI	GCAGC	3 cut(s)	378, 720, 748
BslFI	GGGAC	3 cut(s)	28, 331, 657
BslI	CCNNNNNNNGG	4 cut(s)	52, 349, 354, 661
BsmAI	GTCTC	1 cut(s)	661
BsmFI	GGGAC	3 cut(s)	28, 331, 657
Bsp143I	GATC	4 cut(s)	447, 687, 750, 756
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	1 cut(s)	619
BspCNI	CTCAG	2 cut(s)	71, 786
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	441
BspMAI	CTGCAG	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	442, 745
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	5 cut(s)	177, 288, 348, 349, 638
BssMI	GATC	4 cut(s)	447, 687, 750, 756
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	5 cut(s)	137, 179, 289, 350, 383
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	233, 266
BstDEI	CTNAG	2 cut(s)	58, 773
BstDSI	CCRYGG	1 cut(s)	638
BstENI	CCTNNNNNAGG	2 cut(s)	50, 347
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	4 cut(s)	450, 690, 753, 759
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	4 cut(s)	447, 687, 750, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 460, 543
BstNI	CCWGG	5 cut(s)	137, 179, 289, 350, 383
BstSCI	CCNGG	5 cut(s)	135, 177, 287, 348, 381
BstSFI	CTRYAG	1 cut(s)	734
BstV1I	GCAGC	3 cut(s)	378, 720, 748
BstV2I	GAAGAC	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	638
BtsIMutI	CAGTG	1 cut(s)	659
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	233, 266
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	73, 379
CviAII	CATG	4 cut(s)	165, 214, 247, 639
CviJI	RGCY	9 cut(s)	251, 268, 463, 577, 624, 654, 733, 739, 777
CviKI_1	RGCY	9 cut(s)	251, 268, 463, 577, 624, 654, 733, 739, 777
CviQI	GTAC	2 cut(s)	73, 379
DdeI	CTNAG	2 cut(s)	58, 773
DpnI	GATC	4 cut(s)	449, 689, 752, 758
DpnII	GATC	4 cut(s)	447, 687, 750, 756
DraI	TTTAAA	1 cut(s)	764
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	638
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	205, 395
EcoNI	CCTNNNNNAGG	2 cut(s)	50, 347
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	5 cut(s)	135, 177, 287, 348, 381
EcoT14I	CCWWGG	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	4 cut(s)	168, 217, 250, 642
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	3 cut(s)	28, 331, 657
FatI	CATG	4 cut(s)	164, 213, 246, 638
Fnu4HI	GCNGC	3 cut(s)	392, 734, 737
Fsp4HI	GCNGC	3 cut(s)	392, 734, 737
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	392, 734, 737
HaeII	RGCGCY	1 cut(s)	143
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	4 cut(s)	168, 217, 250, 642
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	6 cut(s)	19, 56, 102, 294, 321, 478
Hpy188I	TCNGA	4 cut(s)	36, 83, 110, 720
Hpy188III	TCNNGA	6 cut(s)	60, 214, 298, 313, 475, 754
HpyAV	CCTTC	4 cut(s)	46, 180, 198, 624
HpyCH4IV	ACGT	3 cut(s)	71, 416, 487
HpyCH4V	TGCA	6 cut(s)	124, 492, 510, 571, 607, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 460, 543
HpyF3I	CTNAG	2 cut(s)	58, 773
HpySE526I	ACGT	3 cut(s)	71, 416, 487
Hsp92II	CATG	4 cut(s)	168, 217, 250, 642
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	4 cut(s)	447, 687, 750, 756
LmnI	GCTCC	2 cut(s)	147, 621
Lsp1109I	GCAGC	3 cut(s)	378, 720, 748
LweI	GCATC	1 cut(s)	501
MaeII	ACGT	3 cut(s)	71, 416, 487
MaeIII	GTNAC	2 cut(s)	172, 742
MalI	GATC	4 cut(s)	449, 689, 752, 758
MboI	GATC	4 cut(s)	447, 687, 750, 756
MboII	GAAGA	8 cut(s)	166, 269, 316, 473, 527, 551, 718, 733
MluCI	AATT	6 cut(s)	336, 526, 598, 725, 766, 792
MlyI	GAGTC	3 cut(s)	13, 50, 487
MnlI	CCTC	2 cut(s)	780, 782
MseI	TTAA	5 cut(s)	13, 241, 359, 763, 795
MslI	CAYNNNNRTG	1 cut(s)	251
MspR9I	CCNGG	5 cut(s)	137, 179, 289, 350, 383
MvaI	CCWGG	5 cut(s)	137, 179, 289, 350, 383
MwoI	GCNNNNNNNGC	3 cut(s)	121, 460, 543
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	4 cut(s)	447, 687, 750, 756
NlaIII	CATG	4 cut(s)	168, 217, 250, 642
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	742
PagI	TCATGA	1 cut(s)	213
PasI	CCCWGGG	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	102, 294, 321
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	3 cut(s)	393, 735, 738
PleI	GAGTC	3 cut(s)	13, 50, 486
PpsI	GAGTC	3 cut(s)	13, 50, 486
PpuMI	RGGWCCY	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	782
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	5 cut(s)	135, 177, 287, 348, 381
PspGI	CCWGG	5 cut(s)	135, 177, 287, 348, 381
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	285
PspPPI	RGGWCCY	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	738
RsaI	GTAC	2 cut(s)	74, 380
RsaNI	GTAC	2 cut(s)	73, 379
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	5 cut(s)	13, 241, 359, 763, 795
SatI	GCNGC	3 cut(s)	392, 734, 737
Sau3AI	GATC	4 cut(s)	447, 687, 750, 756
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	3 cut(s)	13, 50, 487
ScrFI	CCNGG	5 cut(s)	137, 179, 289, 350, 383
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	734
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	6 cut(s)	336, 526, 598, 725, 766, 792
SsiI	CCGC	1 cut(s)	619
SspI	AATATT	2 cut(s)	199, 224
StyD4I	CCNGG	5 cut(s)	135, 177, 287, 348, 381
StyI	CCWWGG	1 cut(s)	638
TaiI	ACGT	3 cut(s)	74, 419, 490
TasI	AATT	6 cut(s)	336, 526, 598, 725, 766, 792
TfiI	GAWTC	3 cut(s)	102, 294, 321
Tru1I	TTAA	5 cut(s)	13, 241, 359, 763, 795
Tru9I	TTAA	5 cut(s)	13, 241, 359, 763, 795
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	3 cut(s)	391, 733, 736
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	4 cut(s)	94, 167, 349, 611
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	666
Van91I	CCANNNNNTGG	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	285
XagI	CCTNNNNNAGG	2 cut(s)	50, 347
XapI	RAATTY	3 cut(s)	336, 526, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.