Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8099568.1

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

220 .. 600

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8099568.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

atggtatctgttgaagaagatgatcttgctggtttggaagatgtaagttctgatggagaggatgataactatgaagctgaagtgacggatggcgaaacagcttcctctgcacctctttctggaactctttctgggagaaagcctaataaaaagagaagtcgtgtggatagtgcagaaccccctcctttgatggaaggagaaggaagatcattcaaagtcttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

74

Amino Acids

7.86

Weight (kDa)

4.19

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	14, 214
AluBI	AGCT	2 cut(s)	77, 101
AluI	AGCT	2 cut(s)	77, 101
Asp700I	GAANNNNTTC	1 cut(s)	127
BccI	CCATC	3 cut(s)	47, 83, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseGI	GGATG	2 cut(s)	67, 94
BseLI	CCNNNNNNNGG	1 cut(s)	119
BsgI	GTGCAG	2 cut(s)	93, 192
BslI	CCNNNNNNNGG	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	22, 206
BssMI	GATC	2 cut(s)	22, 206
BstF5I	GGATG	2 cut(s)	67, 94
BstKTI	GATC	2 cut(s)	25, 209
BstMBI	GATC	2 cut(s)	22, 206
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	67, 94
CviJI	RGCY	3 cut(s)	77, 101, 142
CviKI_1	RGCY	3 cut(s)	77, 101, 142
DpnI	GATC	2 cut(s)	24, 208
DpnII	GATC	2 cut(s)	22, 206
Eco57I	CTGAAG	1 cut(s)	99
FaiI	YATR	1 cut(s)	72
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FokI	GGATG	2 cut(s)	74, 101
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	188, 194
HpyCH4V	TGCA	2 cut(s)	110, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	22, 206
LpnPI	CCDG	3 cut(s)	15, 105, 117
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	24, 208
MboI	GATC	2 cut(s)	22, 206
MboII	GAAGA	4 cut(s)	26, 29, 50, 216
MnlI	CCTC	4 cut(s)	52, 115, 123, 192
MroXI	GAANNNNTTC	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	22, 206
NmuCI	GTSAC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	22, 206
SetI	ASST	3 cut(s)	79, 103, 115
SgeI	CNNG	5 cut(s)	38, 42, 132, 144, 173
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.