Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

4655303 .. 4667727

Gene Structure 12425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG069100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4020 bp

ATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGATGAATCTGATGATGATCCCGATTTTGGGACTGGAAAACCTGGAAGAGCTCAGGAAAAGTTTGAGAAGATTGTTAGGACTGACGTGAAAGATAATTCCTGTCAAGCCTGTGGTGAAATTGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCGTTAAAGGCTCCTCTACCTGACAGATGGCGATGTCCAGAATGTGTGAGCCCTCTAACTGATATTGACAAGATTCTGGATTGTGACAGGCGACCTACTGTGGCGGATGATAGTGATGCCACAAAGATGGGTTCAAGGCAGATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTATCATATCTACATTGCACATGGATTCCTGAGAAAGAATTTTTCAAAGCATTCAAGACATACCCGCGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGGTCTTCCATTAATAACACAGAGGAGGAATTTGTTGCCATTCGACCCGAATGGACAACTGTTGACCGGATCCTTGCTTGCAGGGGCGATGATGAGAAGCAATATCTTGTAAAGTGGCAAGAACTTCCTTACGATGAATGCTATTGGGAAGTGGAGGCTGATATCTCTACATTTCAGCCAGAAATAGAGAAATTCCATAGAATCCAGTCTAGATCTCACAAATTGTCTGGTAAGCAGAAGAGCAGTCTTAAAGATGCTCTCGAATCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTTGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCATATCAGCTTGAAGGTTTGAACTTTTTACGCTTCTCCTGGTCCAAACAAACTCCTGTAATACTTGCAGACGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTGTTTGAAGAGAAAGTCTATCCACATCTAGTGGTGGCTCCACTTTCAACGTTACGAAATTGGGAACGGGAATTCGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATAAGGGAATACGAGTTTTACTTCCCCAAGAATCACAAGAATATCAAGAAAAAGAAATCTGGTCAGATCATTAGTGAGAGCAAGCAAGATAGGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAACTTGGACACTACATCACTGAAACCGATAAAGTGGAAGTGCATGATTGTTGATGAAGGACATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTTCTGGACGAATCATCGCACACTTCTGACTGGAACTCCTCTTCAGAATAATCTGGATGAACTTTTCATGCTTATGCACTTCCTTGATGCTGGCAAGTTTGCAAGTCTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAACGAGGAACAGCAGATCTCCAGGCTTCACAAAATTCTTGCTGCTCATCTTCTTAGAAGGGTGAAAAAAGACGTCATGAAAGAATTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGCAAGCAGAAAGACTATTACAAAGCAATTCTGACTCGTAACTATCAGATACTAACTCGTCATGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAGTTGCGCAAGCTCTGTTGTCATGCTTATATGCTCGAGGGAGTCGAACCTTACATAGAAGATGCCAATGAATCTCACAAGCAACTTTTGGAATCTTCTGGAAAACTGCAAGTATTGGACAGAATGATGGTAAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAACACATGTTGGATTTGCTAGAAGACTACTGTACATACAAAAAATGGCACTATGAGCGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTCAATGCCAAAAATTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCAGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTGGTTGTTGGAAGGTTAAAGGCTCGAAACATCAACCAGGAAGAGCTAGATGATATCATTCGATACGGATCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCGGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGAGAGATTACTTGATCGTGAACAAGCTGGGGATGATGACACTCCGTTGGAGGAAGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGGTGTAGAAGAGGAGGAACCAAAAAAGGTTGCAGTTGACAGTAGTCCTACTGACAATGATAAATCAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTAAACGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGACGATGATCTCGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTATGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGGACCTCTTTCTGGAAATCTTTCTGCAGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGCGGATAGTGCAGAACCCCTTCCTTTGATGGAAGGAGAAGGAAATTCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTGCATTTCTCAAAAATTTTATGAGGTTTGGGATGGTGGATGATGACTATAAGGAGTTTGTAGCACGCATGAAGCAGAAGACATATGAAGAAATAAAAGCTTATGCCACTCTATTCTTGAAACACATAATTGAACCATTAACAGACTTTCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAATATAATGGACGTACTTGTTCGGTATTCAGTTATGTCTATGATTCATAAAAAAGCAAAGTTTGCAACAGAAAATCCAGGCGCTCCTTTATATGAAGATTACGTCCTGTTCCGTTACCCAGGATTGAAGGGTGGCAAATTTTGGAAGGTGGATCACGATGGGATATTACTGCATGCTGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGACGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAAGAGTTGAACCTTCCTTTCCCAGGGCAGGTTAAAGCACAAAATGGAGCACATGCTAATACTGAAGCACCTGGTAACGCCGCTGGAAATGGTAATGGGAATGACGTAGGAGAAAATGTAGCTCAGGGAACCATTGATCCAGTAAACCAGCCTCAATCATATCCAGAGTCTTCTACGTCACATTATTCAAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGGATGGCAACAATAAAGAAGCCCAGAAAGAATACTATGATGAGTTGTATGCAAATGAGATTGCGGAGCTTGATAAGGAAACCATGGGGACGAATTTTCCGTACACTGGGGAAACTGATAAGCAAATGGGTGATGATCAGTTGCCAATGGTTGAAGAAATCGGTTCGGAAGAAATTCTAGCTGCAGCTTGTGACAACGATCCAGATCGTTTAAAATTGCCTCAGCTTTTTAATGAGATGTGCAAACTTGTGGAAGGAACTGCCCCGCAGTCTCTGCAGACTTCTTTTGAAACTATCTGCGAAGACGTACTAAGCATGACTGGCCCCCCAGTGCAACAAAATCCTCCTACTTCAGCACAGCCAACACTAAATGCAGATAAACAACCAGGAGATGAGTCAAAGAGCACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1339

Amino Acids

153.66

Weight (kDa)

5.56

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	54 - 95	4.8e-07	PHD-finger
Chromo	PF00385	123 - 155	4e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	193 - 240	1.7e-13	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	283 - 464	5.2e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	287 - 583	1.6e-79	SNF2-related domain
HDA2-3	PF11496	536 - 749	3.8e-09	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	607 - 720	2.7e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	843 - 901	1.4e-22	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	938 - 1070	1e-50	CHD subfamily II, SANT-like domain
HTH_CHD1_Hrp3	PF23588	1085 - 1123	8.6e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
AatII	GACGTC	1 cut(s)	1566
Acc16I	TGCGCA	2 cut(s)	26, 1724
Acc36I	ACCTGC	1 cut(s)	3382
AccB1I	GGYRCC	1 cut(s)	1060
AccII	CGCG	1 cut(s)	484
AciI	CCGC	8 cut(s)	344, 482, 1109, 2360, 2846, 3444, 3671, 3872
AclI	AACGTT	1 cut(s)	1025
AclWI	GGATC	8 cut(s)	71, 583, 596, 1214, 2332, 3270, 3494, 3800
AcuI	CTGAAG	4 cut(s)	1379, 2778, 3447, 3942
AcyI	GRCGYC	1 cut(s)	1563
AdeI	CACNNNGTG	1 cut(s)	1873
AfaI	GTAC	5 cut(s)	847, 1927, 3126, 3710, 3915
AfiI	CCNNNNNNNGG	8 cut(s)	86, 87, 247, 2798, 3104, 3386, 3391, 3713
AflII	CTTAAG	1 cut(s)	1853
AflIII	ACRYGT	1 cut(s)	1899
AjiI	CACGTC	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	2231, 2263
AloI	GAACNNNNNNTCC	2 cut(s)	3484, 3516
Alw21I	GWGCWC	5 cut(s)	112, 1690, 2149, 3415, 4013
Alw26I	GTCTC	4 cut(s)	194, 1316, 1975, 3882
Alw44I	GTGCAC	1 cut(s)	1686
AlwI	GGATC	8 cut(s)	71, 583, 596, 1214, 2332, 3270, 3494, 3800
AlwNI	CAGNNNCTG	1 cut(s)	3880
Ama87I	CYCGRG	1 cut(s)	1751
AoxI	GGCC	2 cut(s)	2478, 3928
ApaLI	GTGCAC	1 cut(s)	1686
ApeKI	GCWGC	8 cut(s)	22, 1532, 1617, 1858, 2393, 2927, 3788, 3791
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	3 cut(s)	2806, 2862, 3780
AspLEI	GCGC	3 cut(s)	27, 1725, 3194
AspS9I	GGNCC	4 cut(s)	897, 2789, 3337, 3929
AsuHPI	GGTGA	4 cut(s)	185, 1564, 2185, 3749
AvaI	CYCGRG	1 cut(s)	1751
AvaII	GGWCC	3 cut(s)	897, 2789, 3337
BaeGI	GKGCMC	3 cut(s)	1063, 1690, 1869
BamHI	GGATCC	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	1060
BanII	GRGCYC	3 cut(s)	112, 293, 2149
BauI	CACGAG	1 cut(s)	2196
BbsI	GAAGAC	6 cut(s)	516, 1923, 2700, 3011, 3525, 3915
Bbv12I	GWGCWC	5 cut(s)	112, 1690, 2149, 3415, 4013
BbvCI	CCTCAGC	1 cut(s)	3828
BbvI	GCAGC	8 cut(s)	9, 1519, 1629, 1870, 2380, 2914, 3775, 3803
BclI	TGATCA	2 cut(s)	2091, 3742
BcoDI	GTCTC	4 cut(s)	194, 1316, 1975, 3882
BfaI	CTAG	9 cut(s)	30, 729, 1004, 1460, 1913, 2046, 2142, 2303, 3785
BfmI	CTRYAG	3 cut(s)	2811, 3789, 3881
BfoI	RGCGCY	1 cut(s)	3195
BfrI	CTTAAG	1 cut(s)	1853
BfuAI	ACCTGC	1 cut(s)	3382
BglII	AGATCT	3 cut(s)	731, 1506, 2125
BisI	GCNGC	9 cut(s)	23, 1533, 1618, 1859, 2394, 2928, 3444, 3789, 3792
BlsI	GCNGC	9 cut(s)	24, 1534, 1619, 1860, 2395, 2929, 3445, 3790, 3793
Bme18I	GGWCC	3 cut(s)	897, 2789, 3337
BmeT110I	CYCGRG	1 cut(s)	1751
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	4 cut(s)	897, 2789, 3337, 3929
BmiI	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2538, 3493, 3931
BmrI	ACTGGG	2 cut(s)	3723, 3929
BmsI	GCATC	8 cut(s)	346, 763, 862, 980, 1429, 1768, 2211, 2380
BmuI	ACTGGG	2 cut(s)	3723, 3929
BoxI	GACNNNNGTC	1 cut(s)	2562
BpiI	GAAGAC	6 cut(s)	516, 1923, 2700, 3011, 3525, 3915
BplI	GAGNNNNNCTC	2 cut(s)	3585, 3617
BpmI	CTGGAG	2 cut(s)	861, 1495
Bpu10I	CCTNAGC	3 cut(s)	111, 3486, 3828
Bsa29I	ATCGAT	1 cut(s)	1999
BsaBI	GATNNNNATC	4 cut(s)	75, 2112, 2323, 3810
BsaHI	GRCGYC	1 cut(s)	1563
BsaJI	CCNNGG	5 cut(s)	3229, 3340, 3385, 3386, 3690
BsaWI	WCCGGW	1 cut(s)	585
BsaXI	ACNNNNNCTCC	4 cut(s)	1372, 1402, 3465, 3495
Bsc4I	CCNNNNNNNGG	8 cut(s)	86, 87, 247, 2798, 3104, 3386, 3391, 3713
Bse1I	ACTGG	7 cut(s)	97, 724, 1387, 3503, 3718, 3931, 3935
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	4 cut(s)	75, 2112, 2323, 3810
BseCI	ATCGAT	1 cut(s)	1999
BseDI	CCNNGG	5 cut(s)	3229, 3340, 3385, 3386, 3690
BseGI	GGATG	9 cut(s)	352, 853, 1414, 2437, 2746, 2773, 2964, 2971, 3616
BseJI	GATNNNNATC	4 cut(s)	75, 2112, 2323, 3810
BseLI	CCNNNNNNNGG	8 cut(s)	86, 87, 247, 2798, 3104, 3386, 3391, 3713
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	5 cut(s)	125, 438, 1968, 3500, 3842
BseNI	ACTGG	7 cut(s)	97, 724, 1387, 3503, 3718, 3931, 3935
BseRI	GAGGAG	5 cut(s)	243, 557, 1380, 1478, 2546
BseSI	GKGCMC	3 cut(s)	1063, 1690, 1869
BseXI	GCAGC	8 cut(s)	9, 1519, 1629, 1870, 2380, 2914, 3775, 3803
BseYI	CCCAGC	2 cut(s)	2051, 2426
BsgI	GTGCAG	1 cut(s)	2874
Bsh1236I	CGCG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	2480, 3930
BshNI	GGYRCC	1 cut(s)	1060
BshVI	ATCGAT	1 cut(s)	1999
BsiHKAI	GWGCWC	5 cut(s)	112, 1690, 2149, 3415, 4013
BsiHKCI	CYCGRG	1 cut(s)	1751
BsiSI	CCGG	1 cut(s)	586
BslFI	GGGAC	5 cut(s)	103, 429, 948, 3080, 3709
BslI	CCNNNNNNNGG	8 cut(s)	86, 87, 247, 2798, 3104, 3386, 3391, 3713
BsmAI	GTCTC	4 cut(s)	194, 1316, 1975, 3882
BsmBI	CGTCTC	1 cut(s)	1316
BsmFI	GGGAC	5 cut(s)	103, 429, 948, 3080, 3709
BsmI	GAATGC	2 cut(s)	467, 662
BsnI	GGCC	2 cut(s)	2480, 3930
BsoBI	CYCGRG	1 cut(s)	1751
Bsp1286I	GDGCHC	8 cut(s)	112, 293, 1063, 1690, 1869, 2149, 3415, 4013
Bsp1407I	TGTACA	1 cut(s)	1925
Bsp19I	CCATGG	1 cut(s)	3690
BspACI	CCGC	8 cut(s)	344, 482, 1109, 2360, 2846, 3444, 3671, 3872
BspANI	GGCC	2 cut(s)	2480, 3930
BspCNI	CTCAG	5 cut(s)	124, 439, 1969, 3499, 3841
BspDI	ATCGAT	1 cut(s)	1999
BspFNI	CGCG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	1566
BspLI	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2538, 3493, 3931
BspMAI	CTGCAG	3 cut(s)	2815, 3793, 3885
BspMI	ACCTGC	1 cut(s)	3382
BspPI	GGATC	8 cut(s)	71, 583, 596, 1214, 2332, 3270, 3494, 3800
BspQI	GCTCTTC	4 cut(s)	100, 752, 1099, 2292
BspT107I	GGYRCC	1 cut(s)	1060
BspTI	CTTAAG	1 cut(s)	1853
BsrDI	GCAATG	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	1925
BsrI	ACTGG	7 cut(s)	97, 724, 1387, 3503, 3718, 3931, 3935
BssECI	CCNNGG	5 cut(s)	3229, 3340, 3385, 3386, 3690
BssNI	GRCGYC	1 cut(s)	1563
BssSI	CACGAG	1 cut(s)	2196
BssT1I	CCWWGG	1 cut(s)	3690
Bst2BI	CACGAG	1 cut(s)	2196
Bst4CI	ACNGT	7 cut(s)	340, 580, 813, 824, 1925, 2089, 2561
BstACI	GRCGYC	1 cut(s)	1563
BstAFI	CTTAAG	1 cut(s)	1853
BstAPI	GCANNNNNTGC	4 cut(s)	221, 1873, 3173, 3880
BstAUI	TGTACA	1 cut(s)	1925
BstC8I	GCNNGC	8 cut(s)	598, 1196, 1444, 1622, 1727, 2992, 3285, 3318
BstDSI	CCRYGG	1 cut(s)	3690
BstENI	CCTNNNNNAGG	2 cut(s)	3102, 3384
BstF5I	GGATG	9 cut(s)	352, 853, 1414, 2437, 2746, 2773, 2964, 2971, 3616
BstFNI	CGCG	1 cut(s)	484
BstH2I	RGCGCY	1 cut(s)	3195
BstHHI	GCGC	3 cut(s)	27, 1725, 3194
BstMAI	GTCTC	4 cut(s)	194, 1316, 1975, 3882
BstNSI	RCATGY	4 cut(s)	207, 1903, 3287, 3419
BstPAI	GACNNNNGTC	1 cut(s)	2562
BstSFI	CTRYAG	3 cut(s)	2811, 3789, 3881
BstSLI	GKGCMC	3 cut(s)	1063, 1690, 1869
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	8 cut(s)	9, 1519, 1629, 1870, 2380, 2914, 3775, 3803
BstV2I	GAAGAC	6 cut(s)	516, 1923, 2700, 3011, 3525, 3915
BstX2I	RGATCY	4 cut(s)	588, 731, 1506, 2125
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	4 cut(s)	588, 731, 1506, 2125
Bsu15I	ATCGAT	1 cut(s)	1999
BsuRI	GGCC	2 cut(s)	2480, 3930
BsuTUI	ATCGAT	1 cut(s)	1999
BtgI	CCRYGG	1 cut(s)	3690
BtgZI	GCGATG	3 cut(s)	286, 621, 1352
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	9 cut(s)	352, 853, 1414, 2437, 2746, 2773, 2964, 2971, 3616
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	5 cut(s)	848, 1262, 2094, 3711, 3942
BveI	ACCTGC	1 cut(s)	3382
Cac8I	GCNNGC	8 cut(s)	598, 1196, 1444, 1622, 1727, 2992, 3285, 3318
CaiI	CAGNNNCTG	1 cut(s)	3880
CciI	TCATGA	1 cut(s)	1566
CfoI	GCGC	3 cut(s)	27, 1725, 3194
Cfr13I	GGNCC	4 cut(s)	897, 2789, 3337, 3929
ClaI	ATCGAT	1 cut(s)	1999
CseI	GACGC	1 cut(s)	473
CsiI	ACCWGGT	1 cut(s)	3433
Csp6I	GTAC	5 cut(s)	846, 1926, 3125, 3709, 3914
CviQI	GTAC	5 cut(s)	846, 1926, 3125, 3709, 3914
DraI	TTTAAA	2 cut(s)	2475, 3819
DraIII	CACNNNGTG	1 cut(s)	1873
EciI	GGCGGA	1 cut(s)	359
Ecl136II	GAGCTC	2 cut(s)	110, 2147
Eco130I	CCWWGG	1 cut(s)	3690
Eco147I	AGGCCT	1 cut(s)	2480
Eco24I	GRGCYC	3 cut(s)	112, 293, 2149
Eco32I	GATATC	4 cut(s)	682, 1489, 1695, 2311
Eco47I	GGWCC	3 cut(s)	897, 2789, 3337
Eco53kI	GAGCTC	2 cut(s)	110, 2147
Eco57I	CTGAAG	4 cut(s)	1379, 2778, 3447, 3942
Eco88I	CYCGRG	1 cut(s)	1751
EcoICRI	GAGCTC	2 cut(s)	110, 2147
EcoNI	CCTNNNNNAGG	2 cut(s)	3102, 3384
EcoO109I	RGGNCCY	1 cut(s)	3337
EcoRI	GAATTC	1 cut(s)	1046
EcoRV	GATATC	4 cut(s)	682, 1489, 1695, 2311
EcoT14I	CCWWGG	1 cut(s)	3690
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	3 cut(s)	112, 293, 2149
ErhI	CCWWGG	1 cut(s)	3690
Esp3I	CGTCTC	1 cut(s)	1316
FaqI	GGGAC	5 cut(s)	103, 429, 948, 3080, 3709
FauI	CCCGC	3 cut(s)	489, 2353, 3879
FauNDI	CATATG	2 cut(s)	1234, 3010
FbaI	TGATCA	2 cut(s)	2091, 3742
Fnu4HI	GCNGC	9 cut(s)	23, 1533, 1618, 1859, 2394, 2928, 3444, 3789, 3792
FokI	GGATG	9 cut(s)	359, 840, 1421, 2444, 2753, 2780, 2971, 2978, 3623
FriOI	GRGCYC	3 cut(s)	112, 293, 2149
Fsp4HI	GCNGC	9 cut(s)	23, 1533, 1618, 1859, 2394, 2928, 3444, 3789, 3792
FspBI	CTAG	9 cut(s)	30, 729, 1004, 1460, 1913, 2046, 2142, 2303, 3785
FspI	TGCGCA	2 cut(s)	26, 1724
GlaI	GCGC	3 cut(s)	26, 1724, 3193
GluI	GCNGC	9 cut(s)	23, 1533, 1618, 1859, 2394, 2928, 3444, 3789, 3792
GsaI	CCCAGC	2 cut(s)	2055, 2430
GsuI	CTGGAG	2 cut(s)	861, 1495
HaeII	RGCGCY	1 cut(s)	3195
HaeIII	GGCC	2 cut(s)	2480, 3930
HapII	CCGG	1 cut(s)	586
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	3 cut(s)	27, 1725, 3194
Hin1I	GRCGYC	1 cut(s)	1563
Hin6I	GCGC	3 cut(s)	25, 1723, 3192
HinP1I	GCGC	3 cut(s)	25, 1723, 3192
HincII	GTYRAC	4 cut(s)	502, 583, 2557, 3328
HindII	GTYRAC	4 cut(s)	502, 583, 2557, 3328
HindIII	AAGCTT	1 cut(s)	3024
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	4 cut(s)	185, 1564, 2185, 3749
HpyCH4III	ACNGT	7 cut(s)	340, 580, 813, 824, 1925, 2089, 2561
HpyCH4IV	ACGT	8 cut(s)	144, 1025, 1563, 3123, 3213, 3468, 3539, 3912
HpySE526I	ACGT	8 cut(s)	144, 1025, 1563, 3123, 3213, 3468, 3539, 3912
Hsp92I	GRCGYC	1 cut(s)	1563
HspAI	GCGC	3 cut(s)	25, 1723, 3192
Ksp22I	TGATCA	2 cut(s)	2091, 3742
KspAI	GTTAAC	1 cut(s)	502
LguI	GCTCTTC	4 cut(s)	100, 752, 1099, 2292
LmnI	GCTCC	6 cut(s)	256, 1018, 1973, 3199, 3410, 3673
Lsp1109I	GCAGC	8 cut(s)	9, 1519, 1629, 1870, 2380, 2914, 3775, 3803
LweI	GCATC	8 cut(s)	346, 763, 862, 980, 1429, 1768, 2211, 2380
MabI	ACCWGGT	1 cut(s)	3433
MaeI	CTAG	9 cut(s)	30, 729, 1004, 1460, 1913, 2046, 2142, 2303, 3785
MaeII	ACGT	8 cut(s)	144, 1025, 1563, 3123, 3213, 3468, 3539, 3912
MaeIII	GTNAC	8 cut(s)	323, 1026, 1655, 2761, 3224, 3437, 3540, 3797
MfeI	CAATTG	1 cut(s)	2205
MflI	RGATCY	4 cut(s)	588, 731, 1506, 2125
MhlI	GDGCHC	8 cut(s)	112, 293, 1063, 1690, 1869, 2149, 3415, 4013
MlyI	GAGTC	5 cut(s)	1645, 1767, 3102, 3539, 4010
MmeI	TCCRAC	4 cut(s)	1884, 2245, 2427, 3101
Mph1103I	ATGCAT	1 cut(s)	217
MroXI	GAANNNNTTC	3 cut(s)	2806, 2862, 3780
MslI	CAYNNNNRTG	5 cut(s)	365, 1424, 1683, 2385, 3303
MspA1I	CMGCKG	1 cut(s)	3446
MspCI	CTTAAG	1 cut(s)	1853
MspI	CCGG	1 cut(s)	586
MunI	CAATTG	1 cut(s)	2205
Mva1269I	GAATGC	2 cut(s)	467, 662
MvnI	CGCG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	3690
NdeI	CATATG	2 cut(s)	1234, 3010
NlaIV	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2538, 3493, 3931
NmuCI	GTSAC	4 cut(s)	323, 2761, 3540, 3797
NsbI	TGCGCA	2 cut(s)	26, 1724
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	4 cut(s)	207, 1903, 3287, 3419
PaeI	GCATGC	1 cut(s)	3287
PaeR7I	CTCGAG	1 cut(s)	1751
PagI	TCATGA	1 cut(s)	1566
PasI	CCCWGGG	1 cut(s)	3386
PceI	AGGCCT	1 cut(s)	2480
PciI	ACATGT	1 cut(s)	1899
PciSI	GCTCTTC	4 cut(s)	100, 752, 1099, 2292
PcsI	WCGNNNNNNNCGW	2 cut(s)	1758, 3704
PctI	GAATGC	2 cut(s)	467, 662
PdmI	GAANNNNTTC	3 cut(s)	2806, 2862, 3780
PflFI	GACNNNGTC	1 cut(s)	1308
PfoI	TCCNGGA	1 cut(s)	1470
PkrI	GCNGC	9 cut(s)	24, 1534, 1619, 1860, 2395, 2929, 3445, 3790, 3793
PleI	GAGTC	5 cut(s)	1645, 1766, 3102, 3538, 4009
PpsI	GAGTC	5 cut(s)	1645, 1766, 3102, 3538, 4009
PpuMI	RGGWCCY	1 cut(s)	3337
PscI	ACATGT	1 cut(s)	1899
PshAI	GACNNNNGTC	1 cut(s)	2562
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	54
Psp124BI	GAGCTC	2 cut(s)	112, 2149
Psp1406I	AACGTT	1 cut(s)	1025
Psp5II	RGGWCCY	1 cut(s)	3337
PspFI	CCCAGC	2 cut(s)	2051, 2426
PspN4I	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2538, 3493, 3931
PspPI	GGNCC	4 cut(s)	897, 2789, 3337, 3929
PspPPI	RGGWCCY	1 cut(s)	3337
PspXI	VCTCGAGB	1 cut(s)	1751
PsrI	GAACNNNNNNTAC	2 cut(s)	1584, 1616
PstI	CTGCAG	3 cut(s)	2815, 3793, 3885
PstNI	CAGNNNCTG	1 cut(s)	3880
PsuI	RGATCY	4 cut(s)	588, 731, 1506, 2125
PsyI	GACNNNGTC	1 cut(s)	1308
RsaI	GTAC	5 cut(s)	847, 1927, 3126, 3710, 3915
RsaNI	GTAC	5 cut(s)	846, 1926, 3125, 3709, 3914
RseI	CAYNNNNRTG	5 cut(s)	365, 1424, 1683, 2385, 3303
SacI	GAGCTC	2 cut(s)	112, 2149
SapI	GCTCTTC	4 cut(s)	100, 752, 1099, 2292
SatI	GCNGC	9 cut(s)	23, 1533, 1618, 1859, 2394, 2928, 3444, 3789, 3792
Sau96I	GGNCC	4 cut(s)	897, 2789, 3337, 3929
SchI	GAGTC	5 cut(s)	1645, 1767, 3102, 3539, 4010
SduI	GDGCHC	8 cut(s)	112, 293, 1063, 1690, 1869, 2149, 3415, 4013
SexAI	ACCWGGT	1 cut(s)	3433
SfaNI	GCATC	8 cut(s)	346, 763, 862, 980, 1429, 1768, 2211, 2380
SfcI	CTRYAG	3 cut(s)	2811, 3789, 3881
Sfr274I	CTCGAG	1 cut(s)	1751
SinI	GGWCC	3 cut(s)	897, 2789, 3337
SlaI	CTCGAG	1 cut(s)	1751
SmiMI	CAYNNNNRTG	5 cut(s)	365, 1424, 1683, 2385, 3303
SmlI	CTYRAG	2 cut(s)	1751, 1853
SmoI	CTYRAG	2 cut(s)	1751, 1853
SphI	GCATGC	1 cut(s)	3287
SseBI	AGGCCT	1 cut(s)	2480
SsiI	CCGC	8 cut(s)	344, 482, 1109, 2360, 2846, 3444, 3671, 3872
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	9 cut(s)	30, 729, 1004, 1460, 1913, 2046, 2142, 2303, 3785
SstI	GAGCTC	2 cut(s)	112, 2149
StuI	AGGCCT	1 cut(s)	2480
StyI	CCWWGG	1 cut(s)	3690
TaaI	ACNGT	7 cut(s)	340, 580, 813, 824, 1925, 2089, 2561
TaiI	ACGT	8 cut(s)	147, 1028, 1566, 3126, 3216, 3471, 3542, 3915
TaqI	TCGA	8 cut(s)	562, 780, 1752, 1761, 1999, 2152, 2281, 2317
TaqII	GACCGA	1 cut(s)	54
TatI	WGTACW	1 cut(s)	1925
TauI	GCSGC	1 cut(s)	3446
TscAI	CASTG	5 cut(s)	855, 1269, 2094, 3718, 3942
TseFI	GTSAC	4 cut(s)	323, 2761, 3540, 3797
TseI	GCWGC	8 cut(s)	22, 1532, 1617, 1858, 2393, 2927, 3788, 3791
Tsp45I	GTSAC	4 cut(s)	323, 2761, 3540, 3797
TspGWI	ACGGA	5 cut(s)	2337, 2433, 2780, 3212, 3696
TspRI	CASTG	5 cut(s)	855, 1269, 2094, 3718, 3942
Tth111I	GACNNNGTC	1 cut(s)	1308
Vha464I	CTTAAG	1 cut(s)	1853
VneI	GTGCAC	1 cut(s)	1686
VpaK11BI	GGWCC	3 cut(s)	897, 2789, 3337
VspI	ATTAAT	1 cut(s)	531
XagI	CCTNNNNNAGG	2 cut(s)	3102, 3384
XbaI	TCTAGA	2 cut(s)	728, 1459
XceI	RCATGY	4 cut(s)	207, 1903, 3287, 3419
XhoI	CTCGAG	1 cut(s)	1751
XmnI	GAANNNNTTC	3 cut(s)	2806, 2862, 3780
XspI	CTAG	9 cut(s)	30, 729, 1004, 1460, 1913, 2046, 2142, 2303, 3785
ZraI	GACGTC	1 cut(s)	1564
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.