Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

59938672 .. 59957513

Gene Structure 18842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG402100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6195 bp

ATGCCTCGCAAGCCCACCGCCACCATCTTCCTAGGGTTTCTCCTCCTCCTCCTCCTTACATTCTGCTATGCCGATCCGGGTTCCAATTGCCCCAAAACCAGCCCTCTCGTCAACTTGGAATCGCAATTCAAAATGCTCCAGCACCAGCTCAGAGGCTCCGTTAAGATACTTGACGATTGCTCCTTCCAGGTTTCCAATTTCGACATGCTCTCCGGCTCCGACGTCCACTGGTGGGGCGCCGTCGCCCCCGATTTCAATAATCTCACCGCCGGCTTCGTAATCTCCGACCAGAAGCTCAACGAGACGTACAAAAGCGCGAGCTTCACTGTGCGCCTGAGGGACAATGTCACCTGGGATCAGATCCAAGTCCTCGCCGTCTGGGACCTCCCCACCTCCTCCGACTTCGGTCACATCGTGCTCCGGGATGTAGTAAACAGATCGTCCGGCAGCTCCGATTTGGCTCCTTCTCCGTCGCCGGCGAGCGATTCAGGGAATGGGACCGGTCAGGTTCACACTGAGCCGACTATGTTGGTGAATTGCAAGAGTTTGTCCGACGATTTTAGGGTTAGATGGACACTGCGTCCTGAGGAGAATGTGATTGACATTGGGCTGGAGGCTGCCACCGGGTCGACGAATTACATGGCTTTCGGGTGGGCCCGCCCGAATATCACACACCAGTTTATGCTCGGAGCTGACGTGGCCGTCGCCGGATTCAAGGAGGACGGAATGCCGTTTGTGGATGATTTTTACATCACAAAGTACAGCGAGTGCACCGTGTACAAGGACGGCTCCGTCAAAGGGGTGTGCCCCGATACAAGATACGAAGGGACGGCCCCGAATGGCTTGGTGAACAATACCAAATTGGTTTACGGCCACCGGAGGGACGCCGTGTCATTTATTAGGTACCAGAGGCCGTTGGAATCAGCTGATAAAAAGTATGATTTGGCGGTGAAGCATACCGAGAAAAGGACGGTGATTTGGGCCGTGGGGCCGATCAGGCCACCGGATACCCTTCAGCCTTACTATCTTCCCCAAAACCATGGGGGACCCCAGGATGTGGTTTATGGCCATTTGGAGCTGAATGTGTCTGAGCATGTGGATGACTGTTATGGTCCTATAGAGGCCGATGACAAGGAGGATCAGCACCTCATTATTGCGGATGCAAAGGCCCCGCTTGTGGTTACTTCCGGGCAGGCAGTGCATTATCCAGACCCTCCGAACCCTTCAAAGGTTCTTTACATTAACAAGAAAGAGGCTCCGGTGTTGAGGGTCGAAAGAGGGGTGCCGGTCACGTTTTCAATACAAGCTGGGCATGATGTTGCTCTCTACATTACTTCAGATCCTCTTGGTGGGAATGCTACACTGAGGAATGCAAGCGAGACTGTGTATGCTGGAGGATCGGAAGCTCAAGGAGTTCAAGCCAGTCCCAAGGAGTTAATTTGGGCACCAGACAGGAATACCCCAGACCTAGTGTACTATCAATCTCTTTATGACCAGAAAATGGGATGGAAGGTACAGGTGGTTGATGGGGGTCTGTCAGATATGTATAATAACAGTGTGATTTTGGATGATCAGCAAGTTACCTTATTTTGGACACTGGCACCTGATTCTATATCTATTGCAGTCCGGGGTGAGAAGAAAAGTGGTTTCGTGGCAATAGGATTTGGTAGGGGAATGGTGAACAGCTATGCTTATGTGGGTTGGATTGATAATATTGGCAAAGGGCGGGTAAATACTTACTGGATTGATGGAAAGGATGCCTCAAGTGTGCATCCAACACGTGAGAATTTGACATATGTGAGGTGCAGGTCAGAAAATGGGATCATTACGTTCGAGTTCACTCGTCCTTTGAAACCATCATGTGGTAAGAGTGATAAGCCCGAGTGTAAAAACATAATTGATCAAACTACTCCTCTTAAAATTATATGGGCAATGGGTGCTACATGGACTGATGATCATCTTGGTGATCAAAATATGCATTTTGCTACCAGCAGTAGGCCTATAAGGGTGCTGCTTATGCGTGGTTCTGCAGAGGCAGAGCAGGATTTACAGCCAGTATTAGCAGTGCATGGATTTATGATGTTTCTCGCTTGGGCTATCTTGCTTCCTGGTGGAATACTGGCGGCTAGATACTTAAAACATGTTAAGGGTGATGGTTGGTACCGGATTCATGTATACTTGCAGTACTCAGGTTTGGTAATCGTTCTACTTGCCCTTCTTTTTGCTGTTGCTGAGCTCCGTGGTTTCTTTTTCGGCTCATTACATGTTAAATTTGGAACTACGGCTATATTTTTGGTTTGTATGCAACCAGTGAATGCATACCTAAGGCCAAAGAGACCAAATAATGGAGAGCAGGTTTCCTCTAAAAGGCTTCTATGGGAGTATCTTCATGTGATCGGGGGCAGATCTGCCATTGTAGTAGGTTTTGGAGCACTTTTCACAGGACTGAAGCATTTAGTTTCTCGAACCCGCTCGGAACTCTGGTGCTCGGAGCTCAGGGAATTCAGGCATTTGGTCCCCAGATCCATTAAAACTCCGAATATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGACGAGTCTGACGATGATGGTGATTTTGGGACTGGAAAACCTGCTCAGGAAAAGTTTGAGAAGATTGTTAGGATTGACGCGAAAGATAATTCCTGTCAAGCGTGTGGGGAAAGCGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCGTTAAAGGCTCCTCTCCCTGACAGCTGGCGATGTCCGGAATGTGTGAGCCCTCTGACTGACATTGACAAGATTCTGGATTGTGAAATGCGACCTACTGTGGCCGATGATAGTGATGCCTCAAAGCTGGGTTCAAAGCAAATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGATTATCATATCTACATTGCACATGGATTCCTGAGAAAGAATTTATCAAAGCGTTCAAGACGTACCCACGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGTTCTTCAAATAATAACACAGATGATGAATTTGTTGCCATTCGACCTGAATGGACAACTGTTGATCGGATCCTTGCTTGCAGGGGCGACGATGAGAAGCAATATCTTGTAAAGTGGAAAGAACTTCCTTACGATGAATGCTATTGGGAGGTGGAGGCTGATATCTCGACATTTCAACCAGAAATAGAGAGATTCCATAAAATACAGTCTAGATCTCAGAAATTGTCTGGTAAGCAGAAGAGTAGTCTTAAAGATGCTCTTGAACCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTCGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCCTATCAGCTTGAAGGTCTGAACTTCTTACGTTTCTCCTGGTCCAAACAAACTCATGTCATACTTGCAGACGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTCTTTGAAGAGAGAGTCTATCCACATCTAGTGGTGGCTCCACTTTCAACATTACGAAATTGGGAACGGGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATACGTGAATACGAATTTTACTTCCCCAAAAATCACAAGAAGATCAAGAAAAAGAAATCTGGTCAGATCAGTGGGGAAAGCAAGCAAGATAGGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAACTTGGACTCTACATCACTGAAACCGATAAAGTGGGAGTGTATGATTGTTGATGAAGGGCATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTACTGGTCTAATCATCGCACATTGCTGACTGGAACTCCTCTTCAGAACAATCTGGACGAACTTTTCATGCTTATGCACTTCCTCGATGCTGCCAAGAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTTAATGCCAAAAACTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGCGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACGATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGTTAAAGGCTCAAAACATCAACCAGGAAGAGCTCGATGACATCATTAGATATGGATCCAAGGAGTTATTTGCTGATGAAAATGATGAAGTAGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGATAGATTACTTGATCGTGAACAAGCTGGGGATGATGATGCTGTGTTGGAGGACGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGATGAAGCAGAGGCCGTAGAAGAGGAGGAACCAGAAAAGGCTGCAGCGGACAGTAGACCTACAGAAAGTGTTGCAGAGAAGACAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGAAGATGATCTTGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTATGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGCACCTCTTTCTGGAACTCTTTCTGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGTGGATAGTGCAGAACCCCCTCCTTTGATGGAAGGAGAAGGAAGATCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTACATTTGTACAAATTTTGATGAGGTTTGGGATGGGGGATTATGACTGGAAGGAGTTTGTAGCACGCATGAAGAAGACATATGAAGAAATAAAAGCTTATGGTACTCTATTCTTGGAACACATAGTTGAACAACCATTAACAGACTCCCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAGGATACAAGACGTACTTGTTCGGATTTCTGTTATGTCTATGATTCATCAGAAAGCAAAATTTGCAACAGAAAATCCAGGCGCTCCTTTGTATGAAGATGACATCATGTTCCGTTACCCAGGACTGAAGGGTAGCAAATATTGGAAGGAGTATCATGATGGAATATTACTGCGTGCCGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAGGAGTTGAATCTTCCTTTTATGAATTTTCCTGTCCCAGGGCAGGTTAAAGCACAAAATACTGAAGTACCTGGAAACGCTGCTGGAAATGGTAATGGAAATGACGTAGGAGAAAATGTAGTTCAGGGAACCATTGATCCAGCAAACCAACCTCAATCATATCAAGAGTCTTCTACGTTGCATCATTTTAGAGACATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGAAAGGCAACAATGCAGAAGCCCAGAAAGAATACTTTGATGAATTGTATGCAAATGAGATTGCGGAGCTTGAGAAGGAAACCATGGTGACAAATCTGCCATACACTGGGGAGACTGATAAGCAAATGGGCGATCAGTTGCCAAGAGTTGAAGAAATCGGTTCGGAAGAAATTTTAGCTGCAGCTTGTGACAACGATCCAGATCGTTTAAAATTGCCTCAGCTTTATAATGAGATGTGCAAACTAGTGGAAGGAACTGCCCCTCAGTCACTGCAGACTTCTTTTGAAACTATCTGCGAAGACATACTAAGCAGGACTCGCCCCCCTGTGCAACAAAATCCTCCTACCTCAGCACAGCCAACACTAAATGCAGATAGACAACCAGGAGATGAGTCTAAGAGCAATCTTGTAGTCCCTGAATCACCCTCTGCACAAGATAATGCTGCTCCTGCAGCCGAAGTTCAAATGGGAGATTTGGCAACAGAACCCAAGCCCGAAATTGTGGAGTTAGACTCCCGCAACACAGCAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

2064

Amino Acids

232.94

Weight (kDa)

5.48

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DM13	PF10517	42 - 139	1.5e-14	Electron transfer DM13
DOMON	PF03351	185 - 330	3.1e-11	DOMON domain
At5g54830	PF25489	384 - 509	3.2e-69	At5g54830-like domain
DOMON	PF03351	523 - 646	7e-24	DOMON domain
Cytochrom_B561	PF03188	689 - 817	9.2e-06	Eukaryotic cytochrome b561
PHD	PF00628	899 - 940	2.1e-07	PHD-finger
Chromo	PF00385	960 - 1000	2.5e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	1038 - 1085	1.2e-13	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	1128 - 1309	2.4e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	1132 - 1331	2.1e-52	SNF2-related domain
Helicase_C	PF00271	1311 - 1403	3.3e-18	Helicase conserved C-terminal domain
DUF1087	PF06465	1526 - 1586	2.5e-23	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	1622 - 1754	4.3e-55	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2595, 5886
AasI	GACNNNNNNGTC	2 cut(s)	701, 791
AatII	GACGTC	1 cut(s)	225
Acc16I	TGCGCA	1 cut(s)	2567
Acc36I	ACCTGC	4 cut(s)	1797, 2344, 2650, 5449
Acc65I	GGTACC	2 cut(s)	903, 2160
AccB1I	GGYRCC	7 cut(s)	236, 903, 1282, 1444, 1600, 2160, 3595
AccB7I	CCANNNNNTGG	6 cut(s)	1057, 1501, 1862, 2345, 3987, 5765
AccBSI	CCGCTC	1 cut(s)	2472
AccI	GTMKAC	3 cut(s)	629, 2175, 4612
AccII	CGCG	2 cut(s)	317, 2681
AccIII	TCCGGA	1 cut(s)	2812
AcoI	YGGCCR	4 cut(s)	699, 871, 1066, 2877
AcuI	CTGAAG	7 cut(s)	998, 1320, 2468, 3914, 4833, 5309, 5499
AcvI	CACGTG	1 cut(s)	1781
AcyI	GRCGYC	3 cut(s)	222, 237, 885
AdeI	CACNNNGTG	1 cut(s)	415
AflIII	ACRYGT	3 cut(s)	1778, 2140, 2263
AgeI	ACCGGT	1 cut(s)	500
AhdI	GACNNNNNGTC	2 cut(s)	579, 889
AhlI	ACTAGT	1 cut(s)	5902
AjiI	CACGTC	2 cut(s)	697, 3020
AjuI	GAANNNNNNNTTGG	2 cut(s)	4280, 4312
AloI	GAACNNNNNNTCC	2 cut(s)	5536, 5568
Alw21I	GWGCWC	8 cut(s)	420, 773, 2238, 2434, 2489, 2496, 4198, 4353
Alw26I	GTCTC	8 cut(s)	296, 1373, 2329, 2729, 3851, 4024, 5601, 5765
Alw44I	GTGCAC	1 cut(s)	769
AlwNI	CAGNNNCTG	1 cut(s)	5929
Ama87I	CYCGRG	1 cut(s)	1880
Aor13HI	TCCGGA	1 cut(s)	2812
ApaI	GGGCCC	1 cut(s)	658
ApaLI	GTGCAC	1 cut(s)	769
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	4861
Asp718I	GGTACC	2 cut(s)	903, 2160
AspA2I	CCTAGG	1 cut(s)	31
AspLEI	GCGC	5 cut(s)	239, 317, 333, 2568, 5246
AsuC2I	CCSGG	5 cut(s)	78, 422, 625, 1189, 1628
AsuII	TTCGAA	1 cut(s)	3351
AvaI	CYCGRG	1 cut(s)	1880
AvaII	GGWCC	7 cut(s)	382, 498, 1046, 1112, 2515, 3432, 5389
AvrII	CCTAGG	1 cut(s)	31
AxyI	CCTNAGG	3 cut(s)	335, 585, 2324
BaeGI	GKGCMC	5 cut(s)	658, 773, 809, 1447, 3598
BaeI	ACNNNNGTAYC	2 cut(s)	5466, 5499
BalI	TGGCCA	1 cut(s)	1068
BamHI	GGATCC	2 cut(s)	3123, 4373
BanI	GGYRCC	7 cut(s)	236, 903, 1282, 1444, 1600, 2160, 3595
BanII	GRGCYC	6 cut(s)	658, 2238, 2496, 2828, 4198, 4353
BauI	CACGAG	1 cut(s)	4245
BbrPI	CACGTG	1 cut(s)	1781
BbsI	GAAGAC	4 cut(s)	4643, 5060, 5577, 5964
Bbv12I	GWGCWC	8 cut(s)	420, 773, 2238, 2434, 2489, 2496, 4198, 4353
BbvCI	CCTCAGC	2 cut(s)	5877, 6007
BciVI	GTATCC	2 cut(s)	1000, 5160
BclI	TGATCA	5 cut(s)	1570, 1900, 1954, 1966, 4140
BcnI	CCSGG	5 cut(s)	78, 422, 625, 1189, 1628
BcoDI	GTCTC	8 cut(s)	296, 1373, 2329, 2729, 3851, 4024, 5601, 5765
BcuI	ACTAGT	1 cut(s)	5902
BfaI	CTAG	9 cut(s)	32, 1469, 2127, 2571, 3264, 3539, 4095, 4191, 5903
BfmI	CTRYAG	7 cut(s)	1116, 2028, 4599, 4617, 5838, 5930, 6108
BfoI	RGCGCY	2 cut(s)	240, 5247
BfuAI	ACCTGC	4 cut(s)	1797, 2344, 2650, 5449
BfuI	GTATCC	2 cut(s)	1000, 5160
BglI	GCCNNNNNGGC	1 cut(s)	997
BglII	AGATCT	2 cut(s)	2405, 3266
BlnI	CCTAGG	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	2232
BmcAI	AGTACT	2 cut(s)	2186, 3890
Bme18I	GGWCC	7 cut(s)	382, 498, 1046, 1112, 2515, 3432, 5389
BmeRI	GACNNNNNGTC	2 cut(s)	579, 889
BmeT110I	CYCGRG	1 cut(s)	1880
BmgBI	CACGTC	2 cut(s)	697, 3020
BmrI	ACTGGG	1 cut(s)	5775
BmuI	ACTGGG	1 cut(s)	5775
BoxI	GACNNNNGTC	1 cut(s)	405
BpiI	GAAGAC	4 cut(s)	4643, 5060, 5577, 5964
BplI	GAGNNNNNCTC	4 cut(s)	5637, 5669, 6155, 6187
BpmI	CTGGAG	4 cut(s)	122, 632, 1413, 3396
Bpu10I	CCTNAGC	4 cut(s)	2495, 2646, 5877, 6007
Bpu1102I	GCTNAGC	1 cut(s)	2232
Bpu14I	TTCGAA	1 cut(s)	3351
BpuEI	CTTGAG	3 cut(s)	1392, 1747, 5750
BpuMI	CCSGG	5 cut(s)	78, 422, 625, 1189, 1628
Bsa29I	ATCGAT	1 cut(s)	4048
BsaAI	YACGTR	2 cut(s)	1781, 3653
BsaBI	GATNNNNATC	4 cut(s)	1956, 4161, 4372, 5859
BsaHI	GRCGYC	3 cut(s)	222, 237, 885
BsaI	GGTCTC	1 cut(s)	2329
BsaWI	WCCGGW	6 cut(s)	500, 876, 1003, 1258, 2163, 2812
Bse118I	RCCGGY	4 cut(s)	269, 475, 500, 1285
Bse21I	CCTNAGG	3 cut(s)	335, 585, 2324
Bse3DI	GCAATG	3 cut(s)	1938, 2965, 3908
Bse8I	GATNNNNATC	4 cut(s)	1956, 4161, 4372, 5859
BseAI	TCCGGA	1 cut(s)	2812
BseCI	ATCGAT	1 cut(s)	4048
BseJI	GATNNNNATC	4 cut(s)	1956, 4161, 4372, 5859
BseMI	GCAATG	3 cut(s)	1938, 2965, 3908
BseSI	GKGCMC	5 cut(s)	658, 773, 809, 1447, 3598
BseYI	CCCAGC	3 cut(s)	1307, 2902, 4475
BsgI	GTGCAG	4 cut(s)	1825, 4827, 4926, 6072
Bsh1236I	CGCG	2 cut(s)	317, 2681
BshNI	GGYRCC	7 cut(s)	236, 903, 1282, 1444, 1600, 2160, 3595
BshTI	ACCGGT	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	4048
BsiHKAI	GWGCWC	8 cut(s)	420, 773, 2238, 2434, 2489, 2496, 4198, 4353
BsiHKCI	CYCGRG	1 cut(s)	1880
BsmAI	GTCTC	8 cut(s)	296, 1373, 2329, 2729, 3851, 4024, 5601, 5765
BsmBI	CGTCTC	2 cut(s)	296, 3851
BsmI	GAATGC	5 cut(s)	732, 1360, 1375, 2320, 3197
Bso31I	GGTCTC	1 cut(s)	2329
BsoBI	CYCGRG	1 cut(s)	1880
Bsp119I	TTCGAA	1 cut(s)	3351
Bsp120I	GGGCCC	1 cut(s)	654
Bsp13I	TCCGGA	1 cut(s)	2812
Bsp1407I	TGTACA	2 cut(s)	777, 4987
Bsp1720I	GCTNAGC	1 cut(s)	2232
Bsp19I	CCATGG	2 cut(s)	1039, 5742
BspDI	ATCGAT	1 cut(s)	4048
BspEI	TCCGGA	1 cut(s)	2812
BspFNI	CGCG	2 cut(s)	317, 2681
BspHI	TCATGA	1 cut(s)	5317
BspMAI	CTGCAG	5 cut(s)	2032, 4603, 5842, 5934, 6112
BspMI	ACCTGC	4 cut(s)	1797, 2344, 2650, 5449
BspQI	GCTCTTC	2 cut(s)	3634, 4341
BspT104I	TTCGAA	1 cut(s)	3351
BspT107I	GGYRCC	7 cut(s)	236, 903, 1282, 1444, 1600, 2160, 3595
BspTNI	GGTCTC	1 cut(s)	2329
BsrBI	CCGCTC	1 cut(s)	2472
BsrDI	GCAATG	3 cut(s)	1938, 2965, 3908
BsrFI	RCCGGY	4 cut(s)	269, 475, 500, 1285
BsrGI	TGTACA	2 cut(s)	777, 4987
BssAI	RCCGGY	4 cut(s)	269, 475, 500, 1285
BssNAI	GTATAC	1 cut(s)	2176
BssNI	GRCGYC	3 cut(s)	222, 237, 885
BssSI	CACGAG	1 cut(s)	4245
BssT1I	CCWWGG	5 cut(s)	31, 1039, 1428, 4377, 5742
Bst1107I	GTATAC	1 cut(s)	2176
Bst2BI	CACGAG	1 cut(s)	4245
Bst6I	CTCTTC	9 cut(s)	3287, 3513, 3634, 3933, 4072, 4341, 4572, 4712, 5638
BstACI	GRCGYC	3 cut(s)	222, 237, 885
BstAPI	GCANNNNNTGC	4 cut(s)	1198, 1937, 2756, 5225
BstAUI	TGTACA	2 cut(s)	777, 4987
BstBAI	YACGTR	2 cut(s)	1781, 3653
BstBI	TTCGAA	1 cut(s)	3351
BstDSI	CCRYGG	4 cut(s)	984, 1039, 2239, 5742
BstENI	CCTNNNNNAGG	3 cut(s)	2365, 5154, 5451
BstFNI	CGCG	2 cut(s)	317, 2681
BstH2I	RGCGCY	2 cut(s)	240, 5247
BstHHI	GCGC	5 cut(s)	239, 317, 333, 2568, 5246
BstMAI	GTCTC	8 cut(s)	296, 1373, 2329, 2729, 3851, 4024, 5601, 5765
BstNSI	RCATGY	6 cut(s)	208, 1097, 2144, 2267, 2742, 5614
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSFI	CTRYAG	7 cut(s)	1116, 2028, 4599, 4617, 5838, 5930, 6108
BstSLI	GKGCMC	5 cut(s)	658, 773, 809, 1447, 3598
BstUI	CGCG	2 cut(s)	317, 2681
BstV2I	GAAGAC	4 cut(s)	4643, 5060, 5577, 5964
BstX2I	RGATCY	7 cut(s)	360, 1339, 2405, 2522, 3123, 3266, 4373
BstXI	CCANNNNNNTGG	1 cut(s)	1040
BstYI	RGATCY	7 cut(s)	360, 1339, 2405, 2522, 3123, 3266, 4373
BstZ17I	GTATAC	1 cut(s)	2176
Bsu15I	ATCGAT	1 cut(s)	4048
Bsu36I	CCTNAGG	3 cut(s)	335, 585, 2324
BsuI	GTATCC	2 cut(s)	1000, 5160
BsuTUI	ATCGAT	1 cut(s)	4048
BtgI	CCRYGG	4 cut(s)	984, 1039, 2239, 5742
BtgZI	GCGATG	2 cut(s)	2821, 3887
BtrI	CACGTC	2 cut(s)	697, 3020
BtsI	GCAGTG	5 cut(s)	575, 1203, 2070, 3383, 5927
BveI	ACCTGC	4 cut(s)	1797, 2344, 2650, 5449
CaiI	CAGNNNCTG	1 cut(s)	5929
CciI	TCATGA	1 cut(s)	5317
CfoI	GCGC	5 cut(s)	239, 317, 333, 2568, 5246
Cfr10I	RCCGGY	4 cut(s)	269, 475, 500, 1285
ClaI	ATCGAT	1 cut(s)	4048
CseI	GACGC	3 cut(s)	569, 893, 2687
CspAI	ACCGGT	1 cut(s)	500
DinI	GGCGCC	1 cut(s)	238
DraI	TTTAAA	2 cut(s)	4524, 5868
DraIII	CACNNNGTG	1 cut(s)	415
DrdI	GACNNNNNNGTC	2 cut(s)	701, 791
DriI	GACNNNNNGTC	2 cut(s)	579, 889
DseDI	GACNNNNNNGTC	2 cut(s)	701, 791
EaeI	YGGCCR	4 cut(s)	699, 871, 1066, 2877
Eam1104I	CTCTTC	9 cut(s)	3287, 3513, 3634, 3933, 4072, 4341, 4572, 4712, 5638
Eam1105I	GACNNNNNGTC	2 cut(s)	579, 889
EarI	CTCTTC	9 cut(s)	3287, 3513, 3634, 3933, 4072, 4341, 4572, 4712, 5638
Ecl136II	GAGCTC	4 cut(s)	2236, 2494, 4196, 4351
Eco130I	CCWWGG	5 cut(s)	31, 1039, 1428, 4377, 5742
Eco147I	AGGCCT	2 cut(s)	1999, 4529
Eco24I	GRGCYC	6 cut(s)	658, 2238, 2496, 2828, 4198, 4353
Eco31I	GGTCTC	1 cut(s)	2329
Eco32I	GATATC	1 cut(s)	3217
Eco47I	GGWCC	7 cut(s)	382, 498, 1046, 1112, 2515, 3432, 5389
Eco53kI	GAGCTC	4 cut(s)	2236, 2494, 4196, 4351
Eco57I	CTGAAG	7 cut(s)	998, 1320, 2468, 3914, 4833, 5309, 5499
Eco72I	CACGTG	1 cut(s)	1781
Eco81I	CCTNAGG	3 cut(s)	335, 585, 2324
Eco88I	CYCGRG	1 cut(s)	1880
EcoICRI	GAGCTC	4 cut(s)	2236, 2494, 4196, 4351
EcoNI	CCTNNNNNAGG	3 cut(s)	2365, 5154, 5451
EcoO109I	RGGNCCY	4 cut(s)	382, 1046, 1168, 5389
EcoRI	GAATTC	1 cut(s)	2501
EcoRV	GATATC	1 cut(s)	3217
EcoT14I	CCWWGG	5 cut(s)	31, 1039, 1428, 4377, 5742
EcoT22I	ATGCAT	3 cut(s)	1980, 2320, 2752
EcoT38I	GRGCYC	6 cut(s)	658, 2238, 2496, 2828, 4198, 4353
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	5 cut(s)	31, 1039, 1428, 4377, 5742
Esp3I	CGTCTC	2 cut(s)	296, 3851
FalI	AAGNNNNNCTT	6 cut(s)	3297, 3329, 4743, 4775, 5163, 5195
FauI	CCCGC	5 cut(s)	665, 1179, 1719, 2477, 6182
FauNDI	CATATG	3 cut(s)	1795, 3769, 5059
FbaI	TGATCA	5 cut(s)	1570, 1900, 1954, 1966, 4140
FblI	GTMKAC	3 cut(s)	629, 2175, 4612
FriOI	GRGCYC	6 cut(s)	658, 2238, 2496, 2828, 4198, 4353
FspBI	CTAG	9 cut(s)	32, 1469, 2127, 2571, 3264, 3539, 4095, 4191, 5903
FspI	TGCGCA	1 cut(s)	2567
GlaI	GCGC	5 cut(s)	238, 316, 332, 2567, 5245
GsaI	CCCAGC	3 cut(s)	1311, 2906, 4479
GsuI	CTGGAG	4 cut(s)	122, 632, 1413, 3396
HaeII	RGCGCY	2 cut(s)	240, 5247
HgaI	GACGC	3 cut(s)	569, 893, 2687
HhaI	GCGC	5 cut(s)	239, 317, 333, 2568, 5246
Hin1I	GRCGYC	3 cut(s)	222, 237, 885
Hin6I	GCGC	5 cut(s)	237, 315, 331, 2566, 5244
HinP1I	GCGC	5 cut(s)	237, 315, 331, 2566, 5244
HincII	GTYRAC	3 cut(s)	112, 630, 3037
HindII	GTYRAC	3 cut(s)	112, 630, 3037
HindIII	AAGCTT	1 cut(s)	5073
HpaI	GTTAAC	1 cut(s)	3037
Hpy99I	CGWCG	7 cut(s)	224, 245, 475, 557, 634, 707, 3146
Hsp92I	GRCGYC	3 cut(s)	222, 237, 885
HspAI	GCGC	5 cut(s)	237, 315, 331, 2566, 5244
KasI	GGCGCC	1 cut(s)	236
KflI	GGGWCCC	1 cut(s)	1046
Kpn2I	TCCGGA	1 cut(s)	2812
KpnI	GGTACC	2 cut(s)	907, 2164
KroI	GCCGGC	2 cut(s)	269, 475
KroNI	GCCGGC	2 cut(s)	271, 477
Ksp22I	TGATCA	5 cut(s)	1570, 1900, 1954, 1966, 4140
KspAI	GTTAAC	1 cut(s)	3037
LguI	GCTCTTC	2 cut(s)	3634, 4341
MaeI	CTAG	9 cut(s)	32, 1469, 2127, 2571, 3264, 3539, 4095, 4191, 5903
MbiI	CCGCTC	1 cut(s)	2472
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	7 cut(s)	360, 1339, 2405, 2522, 3123, 3266, 4373
MlsI	TGGCCA	1 cut(s)	1068
MluNI	TGGCCA	1 cut(s)	1068
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	9 cut(s)	2615, 3534, 3782, 5117, 5154, 5591, 5968, 6059, 6164
MmeI	TCCRAC	9 cut(s)	243, 309, 423, 576, 897, 1682, 1799, 4294, 4476
Mox20I	TGGCCA	1 cut(s)	1068
Mph1103I	ATGCAT	3 cut(s)	1980, 2320, 2752
MreI	CGCCGGCG	1 cut(s)	475
MroI	TCCGGA	1 cut(s)	2812
MroNI	GCCGGC	2 cut(s)	269, 475
MroXI	GAANNNNTTC	1 cut(s)	4861
MscI	TGGCCA	1 cut(s)	1068
MslI	CAYNNNNRTG	5 cut(s)	1098, 1962, 3959, 4434, 5355
Msp20I	TGGCCA	1 cut(s)	1068
MspA1I	CMGCKG	3 cut(s)	926, 2802, 4604
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	5 cut(s)	732, 1360, 1375, 2320, 3197
MvnI	CGCG	2 cut(s)	317, 2681
NaeI	GCCGGC	2 cut(s)	271, 477
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	5 cut(s)	78, 422, 625, 1189, 1628
NcoI	CCATGG	2 cut(s)	1039, 5742
NdeI	CATATG	3 cut(s)	1795, 3769, 5059
NgoMIV	GCCGGC	2 cut(s)	269, 475
NmuCI	GTSAC	7 cut(s)	346, 407, 1288, 4816, 5746, 5846, 5925
NsbI	TGCGCA	1 cut(s)	2567
NsiI	ATGCAT	3 cut(s)	1980, 2320, 2752
NspI	RCATGY	6 cut(s)	208, 1097, 2144, 2267, 2742, 5614
NspV	TTCGAA	1 cut(s)	3351
PagI	TCATGA	1 cut(s)	5317
PasI	CCCWGGG	1 cut(s)	5453
PceI	AGGCCT	2 cut(s)	1999, 4529
PciI	ACATGT	2 cut(s)	2140, 2263
PciSI	GCTCTTC	2 cut(s)	3634, 4341
PcsI	WCGNNNNNNNCGW	4 cut(s)	282, 411, 693, 2610
PctI	GAATGC	5 cut(s)	732, 1360, 1375, 2320, 3197
PdiI	GCCGGC	2 cut(s)	271, 477
PdmI	GAANNNNTTC	1 cut(s)	4861
PflFI	GACNNNGTC	1 cut(s)	344
PflMI	CCANNNNNTGG	6 cut(s)	1057, 1501, 1862, 2345, 3987, 5765
PfoI	TCCNGGA	1 cut(s)	420
PinAI	ACCGGT	1 cut(s)	500
PleI	GAGTC	9 cut(s)	2614, 3533, 3782, 5117, 5154, 5590, 5968, 6058, 6164
PluTI	GGCGCC	1 cut(s)	240
PmaCI	CACGTG	1 cut(s)	1781
PmlI	CACGTG	1 cut(s)	1781
PpsI	GAGTC	9 cut(s)	2614, 3533, 3782, 5117, 5154, 5590, 5968, 6058, 6164
Ppu21I	YACGTR	2 cut(s)	1781, 3653
PpuMI	RGGWCCY	3 cut(s)	382, 1046, 5389
PscI	ACATGT	2 cut(s)	2140, 2263
PshAI	GACNNNNGTC	1 cut(s)	405
PsiI	TTATAA	2 cut(s)	2595, 5886
Psp124BI	GAGCTC	4 cut(s)	2238, 2496, 4198, 4353
Psp5II	RGGWCCY	3 cut(s)	382, 1046, 5389
PspCI	CACGTG	1 cut(s)	1781
PspFI	CCCAGC	3 cut(s)	1307, 2902, 4475
PspOMI	GGGCCC	1 cut(s)	654
PspPPI	RGGWCCY	3 cut(s)	382, 1046, 5389
PstI	CTGCAG	5 cut(s)	2032, 4603, 5842, 5934, 6112
PstNI	CAGNNNCTG	1 cut(s)	5929
PsuI	RGATCY	7 cut(s)	360, 1339, 2405, 2522, 3123, 3266, 4373
PsyI	GACNNNGTC	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	926, 2802
RseI	CAYNNNNRTG	5 cut(s)	1098, 1962, 3959, 4434, 5355
SacI	GAGCTC	4 cut(s)	2238, 2496, 4198, 4353
SalI	GTCGAC	1 cut(s)	628
SapI	GCTCTTC	2 cut(s)	3634, 4341
ScaI	AGTACT	2 cut(s)	2186, 3890
SchI	GAGTC	9 cut(s)	2615, 3534, 3782, 5117, 5154, 5591, 5968, 6059, 6164
SfcI	CTRYAG	7 cut(s)	1116, 2028, 4599, 4617, 5838, 5930, 6108
SfiI	GGCCNNNNNGGCC	1 cut(s)	997
SfoI	GGCGCC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	3351
SgrAI	CRCCGGYG	1 cut(s)	475
SinI	GGWCC	7 cut(s)	382, 498, 1046, 1112, 2515, 3432, 5389
SmiMI	CAYNNNNRTG	5 cut(s)	1098, 1962, 3959, 4434, 5355
SmlI	CTYRAG	3 cut(s)	1407, 1762, 5729
SmoI	CTYRAG	3 cut(s)	1407, 1762, 5729
SpeI	ACTAGT	1 cut(s)	5902
SseBI	AGGCCT	2 cut(s)	1999, 4529
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	4 cut(s)	1714, 2599, 5303, 5328
SspMI	CTAG	9 cut(s)	32, 1469, 2127, 2571, 3264, 3539, 4095, 4191, 5903
SstI	GAGCTC	4 cut(s)	2238, 2496, 4198, 4353
StuI	AGGCCT	2 cut(s)	1999, 4529
StyI	CCWWGG	5 cut(s)	31, 1039, 1428, 4377, 5742
TaqII	GACCGA	2 cut(s)	395, 2595
TatI	WGTACW	6 cut(s)	759, 777, 1473, 2184, 3888, 4987
TauI	GCSGC	2 cut(s)	2126, 4107
TseFI	GTSAC	7 cut(s)	346, 407, 1288, 4816, 5746, 5846, 5925
Tsp45I	GTSAC	7 cut(s)	346, 407, 1288, 4816, 5746, 5846, 5925
TspGWI	ACGGA	7 cut(s)	148, 459, 738, 781, 2228, 4835, 5264
Tth111I	GACNNNGTC	1 cut(s)	344
Van91I	CCANNNNNTGG	6 cut(s)	1057, 1501, 1862, 2345, 3987, 5765
VneI	GTGCAC	1 cut(s)	769
VpaK11BI	GGWCC	7 cut(s)	382, 498, 1046, 1112, 2515, 3432, 5389
XagI	CCTNNNNNAGG	3 cut(s)	2365, 5154, 5451
XbaI	TCTAGA	1 cut(s)	3263
XceI	RCATGY	6 cut(s)	208, 1097, 2144, 2267, 2742, 5614
XmaJI	CCTAGG	1 cut(s)	31
XmiI	GTMKAC	3 cut(s)	629, 2175, 4612
XmnI	GAANNNNTTC	1 cut(s)	4861
XspI	CTAG	9 cut(s)	32, 1469, 2127, 2571, 3264, 3539, 4095, 4191, 5903
ZraI	GACGTC	1 cut(s)	223
ZrmI	AGTACT	2 cut(s)	2186, 3890
Zsp2I	ATGCAT	3 cut(s)	1980, 2320, 2752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.