Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

4656191 .. 4667436

Gene Structure 11246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3849 bp

ATGATCAGTCAAATCAGGGGAATGAAGCAGATATCTGCTCAGAATATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGATGAATCTGATGATGATCCCGATTTTGGGACTGGAAAACCTGGAAGAGCTCAGGAAAAGTTTGAGAAGATTGTTAGGACTGACGTGAAAGATAATTCCTGTCAAGCCTGTGGTGAAATTGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCGTTAAAGGCTCCTCTACCTGACAGATGGCGATGTCCAGAATGTGTGAGCCCTCTAACTGATATTGACAAGATTCTGGATTGTGACAGGCGACCTACTGTGGCGGATGATAGTGATGCCACAAAGATGGGTTCAAGGCAGATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTATCATATCTACATTGCACATGGATTCCTGAGAAAGAATTTTTCAAAGCATTCAAGACATACCCGCGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGGTCTTCCATTAATAACACAGAGGAGGAATTTGTTGCCATTCGACCCGAATGGACAACTGTTGACCGGATCCTTGCTTGCAGGGGCGATGATGAGAAGCAATATCTTGTAAAGTGGCAAGAACTTCCTTACGATGAATGCTATTGGGAAGTGGAGGCTGATATCTCTACATTTCAGCCAGAAATAGAGAAATTCCATAGAATCCAGTCTAGATCTCACAAATTGTCTGGTAAGCAGAAGAGCAGTCTTAAAGATGCTCTCGAATCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTTGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCATATCAGCTTGAAGGTTTGAACTTTTTACGCTTCTCCTGGTCCAAACAAACTCCTGTAATACTTGCAGACGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTGTTTGAAGAGAAAGTCTATCCACATCTAGTGGTGGCTCCACTTTCAACGTTACGAAATTGGGAACGGGAATTCGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATAAGGGAATACGAGTTTTACTTCCCCAAGAATCACAAGAATATCAAGAAAAAGAAATCTGGTCAGATCATTAGTGAGAGCAAGCAAGATAGGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAACTTGGACACTACATCACTGAAACCGATAAAGTGGAAGTGCATGATTGTTGATGAAGGACATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTTCTGGACGAATCATCGCACACTTCTGACTGGAACTCCTCTTCAGAATAATCTGGATGAACTTTTCATGCTTATGCACTTCCTTGATGCTGGCAAGATACTAACTCGTCATGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAGTTGCGCAAGCTCTGTTGTCATGCTTATATGCTCGAGGGAGTCGAACCTTACATAGAAGATGCCAATGAATCTCACAAGCAACTTTTGGAATCTTCTGGAAAACTGCAAGTATTGGACAGAATGATGGTAAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAACACATGTTGGATTTGCTAGAAGACTACTGTACATACAAAAAATGGCACTATGAGCGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTCAATGCCAAAAATTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCAGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTGGTTGTTGGAAGGTTAAAGGCTCGAAACATCAACCAGGAAGAGCTAGATGATATCATTCGATACGGATCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCGGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGAGAGATTACTTGATCGTGAACAAGCTGGGGATGATGACACTCCGTTGGAGGAAGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGGTGTAGAAGAGGAGGAACCAAAAAAGGTTGCAGTTGACAGTAGTCCTACTGACAATGATAAATCAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTAAACGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGACGATGATCTCGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTATGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGGACCTCTTTCTGGAAATCTTTCTGCAGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGCGGATAGTGCAGAACCCCTTCCTTTGATGGAAGGAGAAGGAAATTCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTGCATTTCTCAAAAATTTTATGAGGTTTGGGATGGTGGATGATGACTATAAGGAGTTTGTAGCACGCATGAAGCAGAAGACATATGAAGAAATAAAAGCTTATGCCACTCTATTCTTGAAACACATAATTGAACCATTAACAGACTTTCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAATATAATGGACGTACTTGTTCGGTATTCAGTTATGTCTATGATTCATAAAAAAGCAAAGTTTGCAACAGAAAATCCAGGCGCTCCTTTATATGAAGATTACGTCCTGTTCCGTTACCCAGGATTGAAGGGTGGCAAATTTTGGAAGGTGGATCACGATGGGATATTACTGCATGCTGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGACGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAAGAGTTGAACCTTCCTTTCCCAGGGCAGGTTAAAGCACAAAATGGAGCACATGCTAATACTGAAGCACCTGGTAACGCCGCTGGAAATGGTAATGGGAATGACGTAGGAGAAAATGTAGCTCAGGGAACCATTGATCCAGTAAACCAGCCTCAATCATATCCAGAGTCTTCTACGTCACATTATTCAAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGGATGGCAACAATAAAGAAGCCCAGAAAGAATACTATGATGAGTTGTATGCAAATGAGATTGCGGAGCTTGATAAGGAAACCATGGGGACGAATTTTCCGTACACTGGGGAAACTGATAAGCAAATGGGTGATGATCAGTTGCCAATGGTTGAAGAAATCGGTTCGGAAGAAATTCTAGCTGCAGCTTGTGACAACGATCCAGATCGTTTAAAATTGCCTCAGCTTTTTAATGAGATGTGCAAACTTGTGGAAGGAACTGCCCCGCAGTCTCTGCAGACTTCTTTTGAAACTATCTGCGAAGACGTACTAAGCATGACTGGCCCCCCAGTGCAACAAAATCCTCCTACTTCAGCACAGCCAACACTAAATGCAGATAAACAACCAGGAGATGAGTCAAAGAGCACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1282

Amino Acids

146.64

Weight (kDa)

5.48

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	69 - 110	4.6e-07	PHD-finger
Chromo	PF00385	138 - 170	3.8e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	208 - 255	1.6e-13	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	298 - 479	4.9e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	302 - 499	1.1e-53	SNF2-related domain
HDA2-3	PF11496	538 - 692	1.8e-08	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	550 - 663	2.6e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	786 - 844	1.3e-22	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	881 - 1013	9.8e-51	CHD subfamily II, SANT-like domain
HTH_CHD1_Hrp3	PF23588	1028 - 1066	8.2e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
Acc16I	TGCGCA	2 cut(s)	71, 1553
Acc36I	ACCTGC	1 cut(s)	3211
AccB1I	GGYRCC	1 cut(s)	1105
AccII	CGCG	1 cut(s)	529
AciI	CCGC	8 cut(s)	389, 527, 1154, 2189, 2675, 3273, 3500, 3701
AclI	AACGTT	1 cut(s)	1070
AclWI	GGATC	8 cut(s)	116, 628, 641, 1259, 2161, 3099, 3323, 3629
AcuI	CTGAAG	4 cut(s)	1424, 2607, 3276, 3771
AdeI	CACNNNGTG	1 cut(s)	1702
AfaI	GTAC	5 cut(s)	892, 1756, 2955, 3539, 3744
AfiI	CCNNNNNNNGG	8 cut(s)	131, 132, 292, 2627, 2933, 3215, 3220, 3542
AflII	CTTAAG	1 cut(s)	1682
AflIII	ACRYGT	1 cut(s)	1728
AjiI	CACGTC	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	2060, 2092
AloI	GAACNNNNNNTCC	2 cut(s)	3313, 3345
Alw21I	GWGCWC	5 cut(s)	157, 1519, 1978, 3244, 3842
Alw26I	GTCTC	4 cut(s)	239, 1361, 1804, 3711
Alw44I	GTGCAC	1 cut(s)	1515
AlwI	GGATC	8 cut(s)	116, 628, 641, 1259, 2161, 3099, 3323, 3629
AlwNI	CAGNNNCTG	1 cut(s)	3709
Ama87I	CYCGRG	1 cut(s)	1580
AoxI	GGCC	2 cut(s)	2307, 3757
ApaLI	GTGCAC	1 cut(s)	1515
ApeKI	GCWGC	6 cut(s)	67, 1687, 2222, 2756, 3617, 3620
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	3 cut(s)	2635, 2691, 3609
AspLEI	GCGC	3 cut(s)	72, 1554, 3023
AspS9I	GGNCC	4 cut(s)	942, 2618, 3166, 3758
AsuHPI	GGTGA	3 cut(s)	230, 2014, 3578
AvaI	CYCGRG	1 cut(s)	1580
AvaII	GGWCC	3 cut(s)	942, 2618, 3166
BaeGI	GKGCMC	3 cut(s)	1108, 1519, 1698
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	1105
BanII	GRGCYC	3 cut(s)	157, 338, 1978
BauI	CACGAG	1 cut(s)	2025
BbsI	GAAGAC	6 cut(s)	561, 1752, 2529, 2840, 3354, 3744
Bbv12I	GWGCWC	5 cut(s)	157, 1519, 1978, 3244, 3842
BbvCI	CCTCAGC	1 cut(s)	3657
BbvI	GCAGC	6 cut(s)	54, 1699, 2209, 2743, 3604, 3632
BclI	TGATCA	3 cut(s)	3, 1920, 3571
BcoDI	GTCTC	4 cut(s)	239, 1361, 1804, 3711
BfaI	CTAG	8 cut(s)	75, 774, 1049, 1742, 1875, 1971, 2132, 3614
BfmI	CTRYAG	3 cut(s)	2640, 3618, 3710
BfoI	RGCGCY	1 cut(s)	3024
BfrI	CTTAAG	1 cut(s)	1682
BfuAI	ACCTGC	1 cut(s)	3211
BglII	AGATCT	2 cut(s)	776, 1954
BisI	GCNGC	7 cut(s)	68, 1688, 2223, 2757, 3273, 3618, 3621
BlsI	GCNGC	7 cut(s)	69, 1689, 2224, 2758, 3274, 3619, 3622
Bme18I	GGWCC	3 cut(s)	942, 2618, 3166
BmeT110I	CYCGRG	1 cut(s)	1580
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	4 cut(s)	942, 2618, 3166, 3758
BmiI	GGNNCC	7 cut(s)	297, 635, 1059, 1107, 2367, 3322, 3760
BmrI	ACTGGG	2 cut(s)	3552, 3758
BmsI	GCATC	8 cut(s)	391, 808, 907, 1025, 1474, 1597, 2040, 2209
BmuI	ACTGGG	2 cut(s)	3552, 3758
BoxI	GACNNNNGTC	1 cut(s)	2391
BpiI	GAAGAC	6 cut(s)	561, 1752, 2529, 2840, 3354, 3744
BplI	GAGNNNNNCTC	2 cut(s)	3414, 3446
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	3 cut(s)	156, 3315, 3657
Bsa29I	ATCGAT	1 cut(s)	1828
BsaBI	GATNNNNATC	4 cut(s)	120, 1941, 2152, 3639
BsaJI	CCNNGG	5 cut(s)	3058, 3169, 3214, 3215, 3519
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	4 cut(s)	1417, 1447, 3294, 3324
Bsc4I	CCNNNNNNNGG	8 cut(s)	131, 132, 292, 2627, 2933, 3215, 3220, 3542
Bse1I	ACTGG	7 cut(s)	142, 769, 1432, 3332, 3547, 3760, 3764
Bse3DI	GCAATG	1 cut(s)	475
Bse8I	GATNNNNATC	4 cut(s)	120, 1941, 2152, 3639
BseCI	ATCGAT	1 cut(s)	1828
BseDI	CCNNGG	5 cut(s)	3058, 3169, 3214, 3215, 3519
BseGI	GGATG	9 cut(s)	397, 898, 1459, 2266, 2575, 2602, 2793, 2800, 3445
BseJI	GATNNNNATC	4 cut(s)	120, 1941, 2152, 3639
BseLI	CCNNNNNNNGG	8 cut(s)	131, 132, 292, 2627, 2933, 3215, 3220, 3542
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	6 cut(s)	53, 170, 483, 1797, 3329, 3671
BseNI	ACTGG	7 cut(s)	142, 769, 1432, 3332, 3547, 3760, 3764
BseRI	GAGGAG	4 cut(s)	288, 602, 1425, 2375
BseSI	GKGCMC	3 cut(s)	1108, 1519, 1698
BseXI	GCAGC	6 cut(s)	54, 1699, 2209, 2743, 3604, 3632
BseYI	CCCAGC	2 cut(s)	1880, 2255
BsgI	GTGCAG	1 cut(s)	2703
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	2309, 3759
BshNI	GGYRCC	1 cut(s)	1105
BshVI	ATCGAT	1 cut(s)	1828
BsiHKAI	GWGCWC	5 cut(s)	157, 1519, 1978, 3244, 3842
BsiHKCI	CYCGRG	1 cut(s)	1580
BsiSI	CCGG	1 cut(s)	631
BslFI	GGGAC	5 cut(s)	148, 474, 993, 2909, 3538
BslI	CCNNNNNNNGG	8 cut(s)	131, 132, 292, 2627, 2933, 3215, 3220, 3542
BsmAI	GTCTC	4 cut(s)	239, 1361, 1804, 3711
BsmBI	CGTCTC	1 cut(s)	1361
BsmFI	GGGAC	5 cut(s)	148, 474, 993, 2909, 3538
BsmI	GAATGC	2 cut(s)	512, 707
BsnI	GGCC	2 cut(s)	2309, 3759
BsoBI	CYCGRG	1 cut(s)	1580
Bsp1286I	GDGCHC	8 cut(s)	157, 338, 1108, 1519, 1698, 1978, 3244, 3842
Bsp1407I	TGTACA	1 cut(s)	1754
Bsp19I	CCATGG	1 cut(s)	3519
BspACI	CCGC	8 cut(s)	389, 527, 1154, 2189, 2675, 3273, 3500, 3701
BspANI	GGCC	2 cut(s)	2309, 3759
BspCNI	CTCAG	6 cut(s)	52, 169, 484, 1798, 3328, 3670
BspDI	ATCGAT	1 cut(s)	1828
BspFNI	CGCG	1 cut(s)	529
BspLI	GGNNCC	7 cut(s)	297, 635, 1059, 1107, 2367, 3322, 3760
BspMAI	CTGCAG	3 cut(s)	2644, 3622, 3714
BspMI	ACCTGC	1 cut(s)	3211
BspPI	GGATC	8 cut(s)	116, 628, 641, 1259, 2161, 3099, 3323, 3629
BspQI	GCTCTTC	4 cut(s)	145, 797, 1144, 2121
BspT107I	GGYRCC	1 cut(s)	1105
BspTI	CTTAAG	1 cut(s)	1682
BsrDI	GCAATG	1 cut(s)	475
BsrGI	TGTACA	1 cut(s)	1754
BsrI	ACTGG	7 cut(s)	142, 769, 1432, 3332, 3547, 3760, 3764
BssECI	CCNNGG	5 cut(s)	3058, 3169, 3214, 3215, 3519
BssSI	CACGAG	1 cut(s)	2025
BssT1I	CCWWGG	1 cut(s)	3519
Bst2BI	CACGAG	1 cut(s)	2025
Bst4CI	ACNGT	7 cut(s)	385, 625, 858, 869, 1754, 1918, 2390
Bst6I	CTCTTC	9 cut(s)	145, 797, 1023, 1144, 1443, 2121, 2352, 2486, 3415
BstAFI	CTTAAG	1 cut(s)	1682
BstAPI	GCANNNNNTGC	4 cut(s)	266, 1702, 3002, 3709
BstAUI	TGTACA	1 cut(s)	1754
BstC8I	GCNNGC	7 cut(s)	643, 1241, 1489, 1556, 2821, 3114, 3147
BstDEI	CTNAG	9 cut(s)	39, 156, 270, 492, 1806, 2061, 3315, 3657, 3746
BstDSI	CCRYGG	1 cut(s)	3519
BstENI	CCTNNNNNAGG	2 cut(s)	2931, 3213
BstF5I	GGATG	9 cut(s)	397, 898, 1459, 2266, 2575, 2602, 2793, 2800, 3445
BstFNI	CGCG	1 cut(s)	529
BstH2I	RGCGCY	1 cut(s)	3024
BstHHI	GCGC	3 cut(s)	72, 1554, 3023
BstMAI	GTCTC	4 cut(s)	239, 1361, 1804, 3711
BstNSI	RCATGY	4 cut(s)	252, 1732, 3116, 3248
BstPAI	GACNNNNGTC	1 cut(s)	2391
BstSFI	CTRYAG	3 cut(s)	2640, 3618, 3710
BstSLI	GKGCMC	3 cut(s)	1108, 1519, 1698
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	6 cut(s)	54, 1699, 2209, 2743, 3604, 3632
BstV2I	GAAGAC	6 cut(s)	561, 1752, 2529, 2840, 3354, 3744
BstX2I	RGATCY	3 cut(s)	633, 776, 1954
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	3 cut(s)	633, 776, 1954
Bsu15I	ATCGAT	1 cut(s)	1828
BsuRI	GGCC	2 cut(s)	2309, 3759
BsuTUI	ATCGAT	1 cut(s)	1828
BtgI	CCRYGG	1 cut(s)	3519
BtgZI	GCGATG	3 cut(s)	331, 666, 1397
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	9 cut(s)	397, 898, 1459, 2266, 2575, 2602, 2793, 2800, 3445
BtsI	GCAGTG	1 cut(s)	893
BtsIMutI	CAGTG	5 cut(s)	893, 1307, 1923, 3540, 3771
BveI	ACCTGC	1 cut(s)	3211
Cac8I	GCNNGC	7 cut(s)	643, 1241, 1489, 1556, 2821, 3114, 3147
CaiI	CAGNNNCTG	1 cut(s)	3709
CfoI	GCGC	3 cut(s)	72, 1554, 3023
Cfr13I	GGNCC	4 cut(s)	942, 2618, 3166, 3758
ClaI	ATCGAT	1 cut(s)	1828
CseI	GACGC	1 cut(s)	518
CsiI	ACCWGGT	1 cut(s)	3262
Csp6I	GTAC	5 cut(s)	891, 1755, 2954, 3538, 3743
CviQI	GTAC	5 cut(s)	891, 1755, 2954, 3538, 3743
DdeI	CTNAG	9 cut(s)	39, 156, 270, 492, 1806, 2061, 3315, 3657, 3746
DraI	TTTAAA	2 cut(s)	2304, 3648
DraIII	CACNNNGTG	1 cut(s)	1702
Eam1104I	CTCTTC	9 cut(s)	145, 797, 1023, 1144, 1443, 2121, 2352, 2486, 3415
EarI	CTCTTC	9 cut(s)	145, 797, 1023, 1144, 1443, 2121, 2352, 2486, 3415
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	2 cut(s)	155, 1976
Eco130I	CCWWGG	1 cut(s)	3519
Eco147I	AGGCCT	1 cut(s)	2309
Eco24I	GRGCYC	3 cut(s)	157, 338, 1978
Eco32I	GATATC	4 cut(s)	33, 727, 1524, 2140
Eco47I	GGWCC	3 cut(s)	942, 2618, 3166
Eco53kI	GAGCTC	2 cut(s)	155, 1976
Eco57I	CTGAAG	4 cut(s)	1424, 2607, 3276, 3771
Eco88I	CYCGRG	1 cut(s)	1580
EcoICRI	GAGCTC	2 cut(s)	155, 1976
EcoNI	CCTNNNNNAGG	2 cut(s)	2931, 3213
EcoO109I	RGGNCCY	1 cut(s)	3166
EcoRI	GAATTC	1 cut(s)	1091
EcoRV	GATATC	4 cut(s)	33, 727, 1524, 2140
EcoT14I	CCWWGG	1 cut(s)	3519
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	3 cut(s)	157, 338, 1978
ErhI	CCWWGG	1 cut(s)	3519
Esp3I	CGTCTC	1 cut(s)	1361
FaqI	GGGAC	5 cut(s)	148, 474, 993, 2909, 3538
FauI	CCCGC	3 cut(s)	534, 2182, 3708
FauNDI	CATATG	2 cut(s)	1279, 2839
FbaI	TGATCA	3 cut(s)	3, 1920, 3571
Fnu4HI	GCNGC	7 cut(s)	68, 1688, 2223, 2757, 3273, 3618, 3621
FokI	GGATG	9 cut(s)	404, 885, 1466, 2273, 2582, 2609, 2800, 2807, 3452
FriOI	GRGCYC	3 cut(s)	157, 338, 1978
Fsp4HI	GCNGC	7 cut(s)	68, 1688, 2223, 2757, 3273, 3618, 3621
FspBI	CTAG	8 cut(s)	75, 774, 1049, 1742, 1875, 1971, 2132, 3614
FspI	TGCGCA	2 cut(s)	71, 1553
GlaI	GCGC	3 cut(s)	71, 1553, 3022
GluI	GCNGC	7 cut(s)	68, 1688, 2223, 2757, 3273, 3618, 3621
GsaI	CCCAGC	2 cut(s)	1884, 2259
GsuI	CTGGAG	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	3024
HaeIII	GGCC	2 cut(s)	2309, 3759
HapII	CCGG	1 cut(s)	631
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	3 cut(s)	72, 1554, 3023
Hin6I	GCGC	3 cut(s)	70, 1552, 3021
HinP1I	GCGC	3 cut(s)	70, 1552, 3021
HincII	GTYRAC	4 cut(s)	547, 628, 2386, 3157
HindII	GTYRAC	4 cut(s)	547, 628, 2386, 3157
HindIII	AAGCTT	1 cut(s)	2853
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	631
HphI	GGTGA	3 cut(s)	230, 2014, 3578
HpyCH4III	ACNGT	7 cut(s)	385, 625, 858, 869, 1754, 1918, 2390
HpyCH4IV	ACGT	7 cut(s)	189, 1070, 2952, 3042, 3297, 3368, 3741
HpyF3I	CTNAG	9 cut(s)	39, 156, 270, 492, 1806, 2061, 3315, 3657, 3746
HpySE526I	ACGT	7 cut(s)	189, 1070, 2952, 3042, 3297, 3368, 3741
HspAI	GCGC	3 cut(s)	70, 1552, 3021
Ksp22I	TGATCA	3 cut(s)	3, 1920, 3571
KspAI	GTTAAC	1 cut(s)	547
LguI	GCTCTTC	4 cut(s)	145, 797, 1144, 2121
LmnI	GCTCC	6 cut(s)	301, 1063, 1802, 3028, 3239, 3502
Lsp1109I	GCAGC	6 cut(s)	54, 1699, 2209, 2743, 3604, 3632
LweI	GCATC	8 cut(s)	391, 808, 907, 1025, 1474, 1597, 2040, 2209
MabI	ACCWGGT	1 cut(s)	3262
MaeI	CTAG	8 cut(s)	75, 774, 1049, 1742, 1875, 1971, 2132, 3614
MaeII	ACGT	7 cut(s)	189, 1070, 2952, 3042, 3297, 3368, 3741
MaeIII	GTNAC	7 cut(s)	368, 1071, 2590, 3053, 3266, 3369, 3626
MfeI	CAATTG	1 cut(s)	2034
MflI	RGATCY	3 cut(s)	633, 776, 1954
MhlI	GDGCHC	8 cut(s)	157, 338, 1108, 1519, 1698, 1978, 3244, 3842
MlyI	GAGTC	4 cut(s)	1596, 2931, 3368, 3839
MmeI	TCCRAC	4 cut(s)	1713, 2074, 2256, 2930
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	3 cut(s)	2635, 2691, 3609
MslI	CAYNNNNRTG	5 cut(s)	410, 1469, 1512, 2214, 3132
MspA1I	CMGCKG	1 cut(s)	3275
MspCI	CTTAAG	1 cut(s)	1682
MspI	CCGG	1 cut(s)	631
MunI	CAATTG	1 cut(s)	2034
Mva1269I	GAATGC	2 cut(s)	512, 707
MvnI	CGCG	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	3519
NdeI	CATATG	2 cut(s)	1279, 2839
NlaIV	GGNNCC	7 cut(s)	297, 635, 1059, 1107, 2367, 3322, 3760
NmuCI	GTSAC	4 cut(s)	368, 2590, 3369, 3626
NsbI	TGCGCA	2 cut(s)	71, 1553
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	4 cut(s)	252, 1732, 3116, 3248
PaeI	GCATGC	1 cut(s)	3116
PaeR7I	CTCGAG	1 cut(s)	1580
PasI	CCCWGGG	1 cut(s)	3215
PceI	AGGCCT	1 cut(s)	2309
PciI	ACATGT	1 cut(s)	1728
PciSI	GCTCTTC	4 cut(s)	145, 797, 1144, 2121
PcsI	WCGNNNNNNNCGW	2 cut(s)	1587, 3533
PctI	GAATGC	2 cut(s)	512, 707
PdmI	GAANNNNTTC	3 cut(s)	2635, 2691, 3609
PflFI	GACNNNGTC	1 cut(s)	1353
PkrI	GCNGC	7 cut(s)	69, 1689, 2224, 2758, 3274, 3619, 3622
PleI	GAGTC	4 cut(s)	1595, 2931, 3367, 3838
PpsI	GAGTC	4 cut(s)	1595, 2931, 3367, 3838
PpuMI	RGGWCCY	1 cut(s)	3166
PscI	ACATGT	1 cut(s)	1728
PshAI	GACNNNNGTC	1 cut(s)	2391
PshBI	ATTAAT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	99
Psp124BI	GAGCTC	2 cut(s)	157, 1978
Psp1406I	AACGTT	1 cut(s)	1070
Psp5II	RGGWCCY	1 cut(s)	3166
PspFI	CCCAGC	2 cut(s)	1880, 2255
PspN4I	GGNNCC	7 cut(s)	297, 635, 1059, 1107, 2367, 3322, 3760
PspPI	GGNCC	4 cut(s)	942, 2618, 3166, 3758
PspPPI	RGGWCCY	1 cut(s)	3166
PspXI	VCTCGAGB	1 cut(s)	1580
PstI	CTGCAG	3 cut(s)	2644, 3622, 3714
PstNI	CAGNNNCTG	1 cut(s)	3709
PsuI	RGATCY	3 cut(s)	633, 776, 1954
PsyI	GACNNNGTC	1 cut(s)	1353
RsaI	GTAC	5 cut(s)	892, 1756, 2955, 3539, 3744
RsaNI	GTAC	5 cut(s)	891, 1755, 2954, 3538, 3743
RseI	CAYNNNNRTG	5 cut(s)	410, 1469, 1512, 2214, 3132
SacI	GAGCTC	2 cut(s)	157, 1978
SapI	GCTCTTC	4 cut(s)	145, 797, 1144, 2121
SatI	GCNGC	7 cut(s)	68, 1688, 2223, 2757, 3273, 3618, 3621
Sau96I	GGNCC	4 cut(s)	942, 2618, 3166, 3758
SchI	GAGTC	4 cut(s)	1596, 2931, 3368, 3839
SduI	GDGCHC	8 cut(s)	157, 338, 1108, 1519, 1698, 1978, 3244, 3842
SexAI	ACCWGGT	1 cut(s)	3262
SfaNI	GCATC	8 cut(s)	391, 808, 907, 1025, 1474, 1597, 2040, 2209
SfcI	CTRYAG	3 cut(s)	2640, 3618, 3710
Sfr274I	CTCGAG	1 cut(s)	1580
SinI	GGWCC	3 cut(s)	942, 2618, 3166
SlaI	CTCGAG	1 cut(s)	1580
SmiMI	CAYNNNNRTG	5 cut(s)	410, 1469, 1512, 2214, 3132
SmlI	CTYRAG	2 cut(s)	1580, 1682
SmoI	CTYRAG	2 cut(s)	1580, 1682
SphI	GCATGC	1 cut(s)	3116
SseBI	AGGCCT	1 cut(s)	2309
SsiI	CCGC	8 cut(s)	389, 527, 1154, 2189, 2675, 3273, 3500, 3701
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	8 cut(s)	75, 774, 1049, 1742, 1875, 1971, 2132, 3614
SstI	GAGCTC	2 cut(s)	157, 1978
StuI	AGGCCT	1 cut(s)	2309
StyI	CCWWGG	1 cut(s)	3519
TaaI	ACNGT	7 cut(s)	385, 625, 858, 869, 1754, 1918, 2390
TaiI	ACGT	7 cut(s)	192, 1073, 2955, 3045, 3300, 3371, 3744
TaqI	TCGA	8 cut(s)	607, 825, 1581, 1590, 1828, 1981, 2110, 2146
TaqII	GACCGA	1 cut(s)	99
TatI	WGTACW	1 cut(s)	1754
TauI	GCSGC	1 cut(s)	3275
TscAI	CASTG	5 cut(s)	900, 1314, 1923, 3547, 3771
TseFI	GTSAC	4 cut(s)	368, 2590, 3369, 3626
TseI	GCWGC	6 cut(s)	67, 1687, 2222, 2756, 3617, 3620
Tsp45I	GTSAC	4 cut(s)	368, 2590, 3369, 3626
TspGWI	ACGGA	5 cut(s)	2166, 2262, 2609, 3041, 3525
TspRI	CASTG	5 cut(s)	900, 1314, 1923, 3547, 3771
Tth111I	GACNNNGTC	1 cut(s)	1353
Vha464I	CTTAAG	1 cut(s)	1682
VneI	GTGCAC	1 cut(s)	1515
VpaK11BI	GGWCC	3 cut(s)	942, 2618, 3166
VspI	ATTAAT	1 cut(s)	576
XagI	CCTNNNNNAGG	2 cut(s)	2931, 3213
XbaI	TCTAGA	1 cut(s)	773
XceI	RCATGY	4 cut(s)	252, 1732, 3116, 3248
XhoI	CTCGAG	1 cut(s)	1580
XmnI	GAANNNNTTC	3 cut(s)	2635, 2691, 3609
XspI	CTAG	8 cut(s)	75, 774, 1049, 1742, 1875, 1971, 2132, 3614
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.