Rmu_sc0022216.1_g000002

CHD3-type chromatin-remodeling factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022216.1
Physical Location & Seq
Reverse (-)
865 .. 4500
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022216.1_g000002.1.cds

Sequence Viewer

Length: 1341 bp
atggtatctgttgaagacgatgatctcgctggtttggaagatgtaagttctgatggagaggatgataactatgaagctgaagtgacggatggcgaaacagcttcctctggacctctttctggaaatctttctgcagggagaaagcctaataaaaagagaagtcgtgtgaatagtgcagaaccccttcctttgatggaaggagaaggaaattcattcaaagtcttgggtttcaatcaaaatcagagggctgcatttctaaaaaattttatgaggtttgggatggtggatgatgactataaggagtttgtagcacgcatgaagcagaagacatatgaagaaataaaagcttatgccactctattcttgaaacacataattgaaccattaacagactatccaaccttttcagatggtgtccctaaagaaggactcaatataacggacgtacttgttcggtattcagttatgtctatgattcataaaaaagcaaagtttgcaacagaaaatccaggcgctcctttatatgaagattacgtcctgttccgttacccaggattgaagggtggcaaattttggaaggtggatcacgatgggatattactgcatgctgtattaaagcatggctatggaagatggcaagctattgttgacgacaaggacctggggattcaagaagttatttgtcaagagttgaaccttcctttcccagggcaggttaaagcacaaaatggagcacatgctaatactgaagcacctggtaacgccgctggaaatggtaatgggaatgacgtaggagaaaatgtagctcagggaaccattgatccagtaaaccagcctcaatcatatccagagtcttctacgtcgcattattcaagagatatgcaaagaagattggtagaatttatcaagcgaagagtgcttctcttggaggatggcaacaataaagaagcccagaaagaatactacgatgagttgtatgcaaatgagattgcggagcttgagaaggaaaccatggggacgaattttccatacactggggaaactgataagcaaacgggtgatgatcagttgccaatagttgaagaaatcggttcggaagaaattctagctgcagcttgtgacaatgatccagatcgtttaaaattgcctcagctttttaatgagatgtgcaaacttgtggaaggaactgcaacgcagtctctgcagacttcttttgaaactatctgcgaagacgtacttagcatgactggcccccctgtgcaacaaaatcctcctacttcagcacagccaacactaaatgcagataaacaaccaggagatgagtcaaagagcacaagataa

Protein Analysis

446

Amino Acids

49.42

Weight (kDa)

4.65

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 1034
AciI CCGC 2 cut(s) 765, 992
AclWI GGATC 3 cut(s) 591, 815, 1121
AcsI RAATTY 6 cut(s) 208, 262, 569, 899, 1021, 1101
AcuI CTGAAG 3 cut(s) 99, 768, 1263
AfaI GTAC 2 cut(s) 447, 1236
AfiI CCNNNNNNNGG 5 cut(s) 119, 425, 707, 712, 1034
AjnI CCWGG 6 cut(s) 508, 550, 660, 706, 754, 1312
AloI GAACNNNNNNTCC 2 cut(s) 805, 837
AluBI AGCT 9 cut(s) 77, 101, 347, 641, 806, 997, 1109, 1115, 1153
AluI AGCT 9 cut(s) 77, 101, 347, 641, 806, 997, 1109, 1115, 1153
Alw21I GWGCWC 2 cut(s) 736, 1334
Alw26I GTCTC 1 cut(s) 1203
AlwI GGATC 3 cut(s) 591, 815, 1121
AlwNI CAGNNNCTG 1 cut(s) 1201
AoxI GGCC 1 cut(s) 1249
ApeKI GCWGC 3 cut(s) 248, 1109, 1112
ApoI RAATTY 6 cut(s) 208, 262, 569, 899, 1021, 1101
Asp700I GAANNNNTTC 3 cut(s) 127, 183, 1101
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 3 cut(s) 110, 658, 1250
AsuHPI GGTGA 1 cut(s) 1070
AvaII GGWCC 2 cut(s) 110, 658
BbsI GAAGAC 4 cut(s) 21, 332, 846, 1236
Bbv12I GWGCWC 2 cut(s) 736, 1334
BbvCI CCTCAGC 1 cut(s) 1149
BbvI GCAGC 3 cut(s) 235, 1096, 1124
BccI CCATC 8 cut(s) 47, 83, 187, 274, 404, 584, 627, 926
BciT130I CCWGG 6 cut(s) 510, 552, 662, 708, 756, 1314
BclI TGATCA 1 cut(s) 1063
BcoDI GTCTC 1 cut(s) 1203
BfaI CTAG 1 cut(s) 1106
BfmI CTRYAG 3 cut(s) 132, 1110, 1202
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 4 cut(s) 249, 765, 1110, 1113
BlsI GCNGC 4 cut(s) 250, 766, 1111, 1114
Bme1390I CCNGG 6 cut(s) 510, 552, 662, 708, 756, 1314
Bme18I GGWCC 2 cut(s) 110, 658
BmgT120I GGNCC 3 cut(s) 110, 658, 1250
BmiI GGNNCC 2 cut(s) 814, 1252
BmrFI CCNGG 6 cut(s) 510, 552, 662, 708, 756, 1314
BmrI ACTGGG 1 cut(s) 1044
BmuI ACTGGG 1 cut(s) 1044
BpiI GAAGAC 4 cut(s) 21, 332, 846, 1236
BplI GAGNNNNNCTC 2 cut(s) 906, 938
Bpu10I CCTNAGC 2 cut(s) 807, 1149
BpuEI CTTGAG 1 cut(s) 1019
BsaBI GATNNNNATC 1 cut(s) 1131
BsaJI CCNNGG 5 cut(s) 550, 661, 706, 707, 1011
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 425, 707, 712, 1034
Bse1I ACTGG 3 cut(s) 824, 1039, 1252
Bse8I GATNNNNATC 1 cut(s) 1131
BseBI CCWGG 6 cut(s) 510, 552, 662, 708, 756, 1314
BseDI CCNNGG 5 cut(s) 550, 661, 706, 707, 1011
BseGI GGATG 5 cut(s) 67, 94, 285, 292, 937
BseJI GATNNNNATC 1 cut(s) 1131
BseLI CCNNNNNNNGG 5 cut(s) 119, 425, 707, 712, 1034
BseMII CTCAG 2 cut(s) 821, 1163
BseNI ACTGG 3 cut(s) 824, 1039, 1252
BseXI GCAGC 3 cut(s) 235, 1096, 1124
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 1251
BsiHKAI GWGCWC 2 cut(s) 736, 1334
BslFI GGGAC 2 cut(s) 401, 1030
BslI CCNNNNNNNGG 5 cut(s) 119, 425, 707, 712, 1034
BsmAI GTCTC 1 cut(s) 1203
BsmFI GGGAC 2 cut(s) 401, 1030
BsnI GGCC 1 cut(s) 1251
Bsp1286I GDGCHC 2 cut(s) 736, 1334
Bsp143I GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
Bsp19I CCATGG 1 cut(s) 1011
BspACI CCGC 2 cut(s) 765, 992
BspANI GGCC 1 cut(s) 1251
BspCNI CTCAG 2 cut(s) 820, 1162
BspLI GGNNCC 2 cut(s) 814, 1252
BspMAI CTGCAG 3 cut(s) 136, 1114, 1206
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 3 cut(s) 591, 815, 1121
BsrI ACTGG 3 cut(s) 824, 1039, 1252
BssECI CCNNGG 5 cut(s) 550, 661, 706, 707, 1011
BssMI GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
BssT1I CCWWGG 1 cut(s) 1011
Bst2UI CCWGG 6 cut(s) 510, 552, 662, 708, 756, 1314
Bst6I CTCTTC 1 cut(s) 907
BstAPI GCANNNNNTGC 2 cut(s) 494, 1201
BstC8I GCNNGC 3 cut(s) 313, 606, 639
BstDEI CTNAG 3 cut(s) 807, 1149, 1238
BstDSI CCRYGG 1 cut(s) 1011
BstENI CCTNNNNNAGG 2 cut(s) 423, 705
BstF5I GGATG 5 cut(s) 67, 94, 285, 292, 937
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 6 cut(s) 25, 586, 823, 1066, 1129, 1135
BstMAI GTCTC 1 cut(s) 1203
BstMBI GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 494, 916, 1201, 1248
BstNI CCWGG 6 cut(s) 510, 552, 662, 708, 756, 1314
BstNSI RCATGY 2 cut(s) 608, 740
BstSCI CCNGG 6 cut(s) 508, 550, 660, 706, 754, 1312
BstSFI CTRYAG 3 cut(s) 132, 1110, 1202
BstV1I GCAGC 3 cut(s) 235, 1096, 1124
BstV2I GAAGAC 4 cut(s) 21, 332, 846, 1236
BsuRI GGCC 1 cut(s) 1251
BtgI CCRYGG 1 cut(s) 1011
BtsCI GGATG 5 cut(s) 67, 94, 285, 292, 937
BtsIMutI CAGTG 1 cut(s) 1032
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 3 cut(s) 313, 606, 639
CaiI CAGNNNCTG 1 cut(s) 1201
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 3 cut(s) 110, 658, 1250
CsiI ACCWGGT 1 cut(s) 754
Csp6I GTAC 2 cut(s) 446, 1235
CviAII CATG 6 cut(s) 316, 605, 620, 737, 1012, 1243
CviQI GTAC 2 cut(s) 446, 1235
DdeI CTNAG 3 cut(s) 807, 1149, 1238
DpnI GATC 6 cut(s) 24, 585, 822, 1065, 1128, 1134
DpnII GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
DraI TTTAAA 1 cut(s) 1140
Eam1104I CTCTTC 1 cut(s) 907
EarI CTCTTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 110, 658
Eco57I CTGAAG 3 cut(s) 99, 768, 1263
EcoNI CCTNNNNNAGG 2 cut(s) 423, 705
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 6 cut(s) 508, 550, 660, 706, 754, 1312
EcoT14I CCWWGG 1 cut(s) 1011
ErhI CCWWGG 1 cut(s) 1011
FaeI CATG 6 cut(s) 319, 608, 623, 740, 1015, 1246
FalI AAGNNNNNCTT 2 cut(s) 1221, 1253
FaqI GGGAC 2 cut(s) 401, 1030
FatI CATG 6 cut(s) 315, 604, 619, 736, 1011, 1242
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 4 cut(s) 249, 765, 1110, 1113
FokI GGATG 5 cut(s) 74, 101, 292, 299, 944
Fsp4HI GCNGC 4 cut(s) 249, 765, 1110, 1113
FspBI CTAG 1 cut(s) 1106
GlaI GCGC 1 cut(s) 514
GluI GCNGC 4 cut(s) 249, 765, 1110, 1113
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 1 cut(s) 1251
HhaI GCGC 1 cut(s) 515
Hin1II CATG 6 cut(s) 319, 608, 623, 740, 1015, 1246
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 5 cut(s) 429, 475, 667, 851, 1322
HphI GGTGA 1 cut(s) 1070
Hpy166II GTNNAC 2 cut(s) 649, 829
Hpy188I TCNGA 4 cut(s) 52, 243, 409, 1096
Hpy188III TCNNGA 9 cut(s) 108, 120, 364, 587, 671, 686, 848, 873, 1130
Hpy8I GTNNAC 2 cut(s) 649, 829
Hpy99I CGWCG 1 cut(s) 865
HpyAV CCTTC 9 cut(s) 191, 194, 197, 419, 553, 571, 707, 997, 1175
HpyCH4IV ACGT 5 cut(s) 444, 534, 789, 860, 1233
HpyF10VI GCNNNNNNNGC 4 cut(s) 494, 916, 1201, 1248
HpyF3I CTNAG 3 cut(s) 807, 1149, 1238
HpySE526I ACGT 5 cut(s) 444, 534, 789, 860, 1233
Hsp92II CATG 6 cut(s) 319, 608, 623, 740, 1015, 1246
HspAI GCGC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
LmnI GCTCC 3 cut(s) 520, 731, 994
Lsp1109I GCAGC 3 cut(s) 235, 1096, 1124
MabI ACCWGGT 1 cut(s) 754
MaeI CTAG 1 cut(s) 1106
MaeII ACGT 5 cut(s) 444, 534, 789, 860, 1233
MaeIII GTNAC 4 cut(s) 82, 545, 758, 1118
MalI GATC 6 cut(s) 24, 585, 822, 1065, 1128, 1134
MboI GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
MhlI GDGCHC 2 cut(s) 736, 1334
MluCI AATT 8 cut(s) 208, 262, 375, 569, 899, 1021, 1101, 1142
MlyI GAGTC 3 cut(s) 423, 860, 1331
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 9 cut(s) 52, 115, 123, 237, 264, 846, 922, 1158, 1281
MroXI GAANNNNTTC 3 cut(s) 127, 183, 1101
MseI TTAA 5 cut(s) 386, 614, 717, 1139, 1158
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 767
MspR9I CCNGG 6 cut(s) 510, 552, 662, 708, 756, 1314
MvaI CCWGG 6 cut(s) 510, 552, 662, 708, 756, 1314
MwoI GCNNNNNNNGC 4 cut(s) 494, 916, 1201, 1248
NcoI CCATGG 1 cut(s) 1011
NdeI CATATG 1 cut(s) 331
NdeII GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
NlaIII CATG 6 cut(s) 319, 608, 623, 740, 1015, 1246
NlaIV GGNNCC 2 cut(s) 814, 1252
NmuCI GTSAC 2 cut(s) 82, 1118
NspI RCATGY 2 cut(s) 608, 740
PaeI GCATGC 1 cut(s) 608
PasI CCCWGGG 1 cut(s) 707
PdmI GAANNNNTTC 3 cut(s) 127, 183, 1101
PfeI GAWTC 2 cut(s) 475, 667
PflMI CCANNNNNTGG 1 cut(s) 1034
PkrI GCNGC 4 cut(s) 250, 766, 1111, 1114
PleI GAGTC 3 cut(s) 423, 859, 1330
PpsI GAGTC 3 cut(s) 423, 859, 1330
PpuMI RGGWCCY 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 6 cut(s) 508, 550, 660, 706, 754, 1312
PspGI CCWGG 6 cut(s) 508, 550, 660, 706, 754, 1312
PspN4I GGNNCC 2 cut(s) 814, 1252
PspPI GGNCC 3 cut(s) 110, 658, 1250
PspPPI RGGWCCY 1 cut(s) 658
PstI CTGCAG 3 cut(s) 136, 1114, 1206
PstNI CAGNNNCTG 1 cut(s) 1201
RsaI GTAC 2 cut(s) 447, 1236
RsaNI GTAC 2 cut(s) 446, 1235
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 5 cut(s) 386, 614, 717, 1139, 1158
SatI GCNGC 4 cut(s) 249, 765, 1110, 1113
Sau3AI GATC 6 cut(s) 22, 583, 820, 1063, 1126, 1132
Sau96I GGNCC 3 cut(s) 110, 658, 1250
SchI GAGTC 3 cut(s) 423, 860, 1331
ScrFI CCNGG 6 cut(s) 510, 552, 662, 708, 756, 1314
SduI GDGCHC 2 cut(s) 736, 1334
SexAI ACCWGGT 1 cut(s) 754
SfcI CTRYAG 3 cut(s) 132, 1110, 1202
SinI GGWCC 2 cut(s) 110, 658
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SphI GCATGC 1 cut(s) 608
Sse9I AATT 8 cut(s) 208, 262, 375, 569, 899, 1021, 1101, 1142
SsiI CCGC 2 cut(s) 765, 992
SspMI CTAG 1 cut(s) 1106
StyD4I CCNGG 6 cut(s) 508, 550, 660, 706, 754, 1312
StyI CCWWGG 1 cut(s) 1011
TaiI ACGT 5 cut(s) 447, 537, 792, 863, 1236
TasI AATT 8 cut(s) 208, 262, 375, 569, 899, 1021, 1101, 1142
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 2 cut(s) 475, 667
Tru1I TTAA 5 cut(s) 386, 614, 717, 1139, 1158
Tru9I TTAA 5 cut(s) 386, 614, 717, 1139, 1158
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 2 cut(s) 82, 1118
TseI GCWGC 3 cut(s) 248, 1109, 1112
Tsp45I GTSAC 2 cut(s) 82, 1118
TspDTI ATGAA 6 cut(s) 87, 201, 332, 348, 467, 540
TspGWI ACGGA 3 cut(s) 101, 455, 533
TspRI CASTG 1 cut(s) 1039
Van91I CCANNNNNTGG 1 cut(s) 1034
VpaK11BI GGWCC 2 cut(s) 110, 658
XagI CCTNNNNNAGG 2 cut(s) 423, 705
XapI RAATTY 6 cut(s) 208, 262, 569, 899, 1021, 1101
XceI RCATGY 2 cut(s) 608, 740
XmnI GAANNNNTTC 3 cut(s) 127, 183, 1101
XspI CTAG 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.