CHD3-type chromatin-remodeling factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900 |
| fragaria_vesca | FvH4_2g40920 |
| malus_domestica | MD08G1058800.v1.1 MD15G1037700.v1.1 |
| prunus_persica | Prupe.1G391600_v2.0.a1 |
| pyrus_communis | pycom08g04860 pycom08g04870 pycom15g03490 |
| rosa_chinensis | RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661 |
| rosa_laevigata | RLG00000011399 RLG00000025364 |
| rosa_multiflora | Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00424300 Rroxscaffold_7G00168470 |
| rosa_rugosa | Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400 |
| rosa_samantha | Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500 |
| rosa_wichuraiana | Rw2G021110 Rw3G005270 Rw6G035200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 703 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1034 |
| AciI | CCGC | 2 cut(s) | 765, 992 |
| AclWI | GGATC | 3 cut(s) | 591, 815, 1121 |
| AcsI | RAATTY | 6 cut(s) | 208, 262, 569, 899, 1021, 1101 |
| AcuI | CTGAAG | 3 cut(s) | 99, 768, 1263 |
| AfaI | GTAC | 2 cut(s) | 447, 1236 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 119, 425, 707, 712, 1034 |
| AjnI | CCWGG | 6 cut(s) | 508, 550, 660, 706, 754, 1312 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 805, 837 |
| AluBI | AGCT | 9 cut(s) | 77, 101, 347, 641, 806, 997, 1109, 1115, 1153 |
| AluI | AGCT | 9 cut(s) | 77, 101, 347, 641, 806, 997, 1109, 1115, 1153 |
| Alw21I | GWGCWC | 2 cut(s) | 736, 1334 |
| Alw26I | GTCTC | 1 cut(s) | 1203 |
| AlwI | GGATC | 3 cut(s) | 591, 815, 1121 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1201 |
| AoxI | GGCC | 1 cut(s) | 1249 |
| ApeKI | GCWGC | 3 cut(s) | 248, 1109, 1112 |
| ApoI | RAATTY | 6 cut(s) | 208, 262, 569, 899, 1021, 1101 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 127, 183, 1101 |
| AspLEI | GCGC | 1 cut(s) | 515 |
| AspS9I | GGNCC | 3 cut(s) | 110, 658, 1250 |
| AsuHPI | GGTGA | 1 cut(s) | 1070 |
| AvaII | GGWCC | 2 cut(s) | 110, 658 |
| BbsI | GAAGAC | 4 cut(s) | 21, 332, 846, 1236 |
| Bbv12I | GWGCWC | 2 cut(s) | 736, 1334 |
| BbvCI | CCTCAGC | 1 cut(s) | 1149 |
| BbvI | GCAGC | 3 cut(s) | 235, 1096, 1124 |
| BccI | CCATC | 8 cut(s) | 47, 83, 187, 274, 404, 584, 627, 926 |
| BciT130I | CCWGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| BclI | TGATCA | 1 cut(s) | 1063 |
| BcoDI | GTCTC | 1 cut(s) | 1203 |
| BfaI | CTAG | 1 cut(s) | 1106 |
| BfmI | CTRYAG | 3 cut(s) | 132, 1110, 1202 |
| BfoI | RGCGCY | 1 cut(s) | 516 |
| BfuAI | ACCTGC | 1 cut(s) | 703 |
| BisI | GCNGC | 4 cut(s) | 249, 765, 1110, 1113 |
| BlsI | GCNGC | 4 cut(s) | 250, 766, 1111, 1114 |
| Bme1390I | CCNGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| Bme18I | GGWCC | 2 cut(s) | 110, 658 |
| BmgT120I | GGNCC | 3 cut(s) | 110, 658, 1250 |
| BmiI | GGNNCC | 2 cut(s) | 814, 1252 |
| BmrFI | CCNGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| BmrI | ACTGGG | 1 cut(s) | 1044 |
| BmuI | ACTGGG | 1 cut(s) | 1044 |
| BpiI | GAAGAC | 4 cut(s) | 21, 332, 846, 1236 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 906, 938 |
| Bpu10I | CCTNAGC | 2 cut(s) | 807, 1149 |
| BpuEI | CTTGAG | 1 cut(s) | 1019 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1131 |
| BsaJI | CCNNGG | 5 cut(s) | 550, 661, 706, 707, 1011 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 786, 816 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 119, 425, 707, 712, 1034 |
| Bse1I | ACTGG | 3 cut(s) | 824, 1039, 1252 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1131 |
| BseBI | CCWGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| BseDI | CCNNGG | 5 cut(s) | 550, 661, 706, 707, 1011 |
| BseGI | GGATG | 5 cut(s) | 67, 94, 285, 292, 937 |
| BseJI | GATNNNNATC | 1 cut(s) | 1131 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 119, 425, 707, 712, 1034 |
| BseMII | CTCAG | 2 cut(s) | 821, 1163 |
| BseNI | ACTGG | 3 cut(s) | 824, 1039, 1252 |
| BseXI | GCAGC | 3 cut(s) | 235, 1096, 1124 |
| BsgI | GTGCAG | 1 cut(s) | 195 |
| BshFI | GGCC | 1 cut(s) | 1251 |
| BsiHKAI | GWGCWC | 2 cut(s) | 736, 1334 |
| BslFI | GGGAC | 2 cut(s) | 401, 1030 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 119, 425, 707, 712, 1034 |
| BsmAI | GTCTC | 1 cut(s) | 1203 |
| BsmFI | GGGAC | 2 cut(s) | 401, 1030 |
| BsnI | GGCC | 1 cut(s) | 1251 |
| Bsp1286I | GDGCHC | 2 cut(s) | 736, 1334 |
| Bsp143I | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| Bsp19I | CCATGG | 1 cut(s) | 1011 |
| BspACI | CCGC | 2 cut(s) | 765, 992 |
| BspANI | GGCC | 1 cut(s) | 1251 |
| BspCNI | CTCAG | 2 cut(s) | 820, 1162 |
| BspLI | GGNNCC | 2 cut(s) | 814, 1252 |
| BspMAI | CTGCAG | 3 cut(s) | 136, 1114, 1206 |
| BspMI | ACCTGC | 1 cut(s) | 703 |
| BspPI | GGATC | 3 cut(s) | 591, 815, 1121 |
| BsrI | ACTGG | 3 cut(s) | 824, 1039, 1252 |
| BssECI | CCNNGG | 5 cut(s) | 550, 661, 706, 707, 1011 |
| BssMI | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| BssT1I | CCWWGG | 1 cut(s) | 1011 |
| Bst2UI | CCWGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| Bst6I | CTCTTC | 1 cut(s) | 907 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 494, 1201 |
| BstC8I | GCNNGC | 3 cut(s) | 313, 606, 639 |
| BstDEI | CTNAG | 3 cut(s) | 807, 1149, 1238 |
| BstDSI | CCRYGG | 1 cut(s) | 1011 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 423, 705 |
| BstF5I | GGATG | 5 cut(s) | 67, 94, 285, 292, 937 |
| BstH2I | RGCGCY | 1 cut(s) | 516 |
| BstHHI | GCGC | 1 cut(s) | 515 |
| BstKTI | GATC | 6 cut(s) | 25, 586, 823, 1066, 1129, 1135 |
| BstMAI | GTCTC | 1 cut(s) | 1203 |
| BstMBI | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 494, 916, 1201, 1248 |
| BstNI | CCWGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| BstNSI | RCATGY | 2 cut(s) | 608, 740 |
| BstSCI | CCNGG | 6 cut(s) | 508, 550, 660, 706, 754, 1312 |
| BstSFI | CTRYAG | 3 cut(s) | 132, 1110, 1202 |
| BstV1I | GCAGC | 3 cut(s) | 235, 1096, 1124 |
| BstV2I | GAAGAC | 4 cut(s) | 21, 332, 846, 1236 |
| BsuRI | GGCC | 1 cut(s) | 1251 |
| BtgI | CCRYGG | 1 cut(s) | 1011 |
| BtsCI | GGATG | 5 cut(s) | 67, 94, 285, 292, 937 |
| BtsIMutI | CAGTG | 1 cut(s) | 1032 |
| BveI | ACCTGC | 1 cut(s) | 703 |
| Cac8I | GCNNGC | 3 cut(s) | 313, 606, 639 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1201 |
| CfoI | GCGC | 1 cut(s) | 515 |
| Cfr13I | GGNCC | 3 cut(s) | 110, 658, 1250 |
| CsiI | ACCWGGT | 1 cut(s) | 754 |
| Csp6I | GTAC | 2 cut(s) | 446, 1235 |
| CviAII | CATG | 6 cut(s) | 316, 605, 620, 737, 1012, 1243 |
| CviQI | GTAC | 2 cut(s) | 446, 1235 |
| DdeI | CTNAG | 3 cut(s) | 807, 1149, 1238 |
| DpnI | GATC | 6 cut(s) | 24, 585, 822, 1065, 1128, 1134 |
| DpnII | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| DraI | TTTAAA | 1 cut(s) | 1140 |
| Eam1104I | CTCTTC | 1 cut(s) | 907 |
| EarI | CTCTTC | 1 cut(s) | 907 |
| Eco130I | CCWWGG | 1 cut(s) | 1011 |
| Eco47I | GGWCC | 2 cut(s) | 110, 658 |
| Eco57I | CTGAAG | 3 cut(s) | 99, 768, 1263 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 423, 705 |
| EcoO109I | RGGNCCY | 1 cut(s) | 658 |
| EcoRII | CCWGG | 6 cut(s) | 508, 550, 660, 706, 754, 1312 |
| EcoT14I | CCWWGG | 1 cut(s) | 1011 |
| ErhI | CCWWGG | 1 cut(s) | 1011 |
| FaeI | CATG | 6 cut(s) | 319, 608, 623, 740, 1015, 1246 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1221, 1253 |
| FaqI | GGGAC | 2 cut(s) | 401, 1030 |
| FatI | CATG | 6 cut(s) | 315, 604, 619, 736, 1011, 1242 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FbaI | TGATCA | 1 cut(s) | 1063 |
| Fnu4HI | GCNGC | 4 cut(s) | 249, 765, 1110, 1113 |
| FokI | GGATG | 5 cut(s) | 74, 101, 292, 299, 944 |
| Fsp4HI | GCNGC | 4 cut(s) | 249, 765, 1110, 1113 |
| FspBI | CTAG | 1 cut(s) | 1106 |
| GlaI | GCGC | 1 cut(s) | 514 |
| GluI | GCNGC | 4 cut(s) | 249, 765, 1110, 1113 |
| HaeII | RGCGCY | 1 cut(s) | 516 |
| HaeIII | GGCC | 1 cut(s) | 1251 |
| HhaI | GCGC | 1 cut(s) | 515 |
| Hin1II | CATG | 6 cut(s) | 319, 608, 623, 740, 1015, 1246 |
| Hin6I | GCGC | 1 cut(s) | 513 |
| HinP1I | GCGC | 1 cut(s) | 513 |
| HincII | GTYRAC | 1 cut(s) | 649 |
| HindII | GTYRAC | 1 cut(s) | 649 |
| HindIII | AAGCTT | 1 cut(s) | 345 |
| HinfI | GANTC | 5 cut(s) | 429, 475, 667, 851, 1322 |
| HphI | GGTGA | 1 cut(s) | 1070 |
| Hpy166II | GTNNAC | 2 cut(s) | 649, 829 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 243, 409, 1096 |
| Hpy188III | TCNNGA | 9 cut(s) | 108, 120, 364, 587, 671, 686, 848, 873, 1130 |
| Hpy8I | GTNNAC | 2 cut(s) | 649, 829 |
| Hpy99I | CGWCG | 1 cut(s) | 865 |
| HpyAV | CCTTC | 9 cut(s) | 191, 194, 197, 419, 553, 571, 707, 997, 1175 |
| HpyCH4IV | ACGT | 5 cut(s) | 444, 534, 789, 860, 1233 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 494, 916, 1201, 1248 |
| HpyF3I | CTNAG | 3 cut(s) | 807, 1149, 1238 |
| HpySE526I | ACGT | 5 cut(s) | 444, 534, 789, 860, 1233 |
| Hsp92II | CATG | 6 cut(s) | 319, 608, 623, 740, 1015, 1246 |
| HspAI | GCGC | 1 cut(s) | 513 |
| Ksp22I | TGATCA | 1 cut(s) | 1063 |
| Kzo9I | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| LmnI | GCTCC | 3 cut(s) | 520, 731, 994 |
| Lsp1109I | GCAGC | 3 cut(s) | 235, 1096, 1124 |
| MabI | ACCWGGT | 1 cut(s) | 754 |
| MaeI | CTAG | 1 cut(s) | 1106 |
| MaeII | ACGT | 5 cut(s) | 444, 534, 789, 860, 1233 |
| MaeIII | GTNAC | 4 cut(s) | 82, 545, 758, 1118 |
| MalI | GATC | 6 cut(s) | 24, 585, 822, 1065, 1128, 1134 |
| MboI | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| MhlI | GDGCHC | 2 cut(s) | 736, 1334 |
| MluCI | AATT | 8 cut(s) | 208, 262, 375, 569, 899, 1021, 1101, 1142 |
| MlyI | GAGTC | 3 cut(s) | 423, 860, 1331 |
| MmeI | TCCRAC | 1 cut(s) | 422 |
| MnlI | CCTC | 9 cut(s) | 52, 115, 123, 237, 264, 846, 922, 1158, 1281 |
| MroXI | GAANNNNTTC | 3 cut(s) | 127, 183, 1101 |
| MseI | TTAA | 5 cut(s) | 386, 614, 717, 1139, 1158 |
| MslI | CAYNNNNRTG | 1 cut(s) | 624 |
| MspA1I | CMGCKG | 1 cut(s) | 767 |
| MspR9I | CCNGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| MvaI | CCWGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 494, 916, 1201, 1248 |
| NcoI | CCATGG | 1 cut(s) | 1011 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| NlaIII | CATG | 6 cut(s) | 319, 608, 623, 740, 1015, 1246 |
| NlaIV | GGNNCC | 2 cut(s) | 814, 1252 |
| NmuCI | GTSAC | 2 cut(s) | 82, 1118 |
| NspI | RCATGY | 2 cut(s) | 608, 740 |
| PaeI | GCATGC | 1 cut(s) | 608 |
| PasI | CCCWGGG | 1 cut(s) | 707 |
| PdmI | GAANNNNTTC | 3 cut(s) | 127, 183, 1101 |
| PfeI | GAWTC | 2 cut(s) | 475, 667 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1034 |
| PkrI | GCNGC | 4 cut(s) | 250, 766, 1111, 1114 |
| PleI | GAGTC | 3 cut(s) | 423, 859, 1330 |
| PpsI | GAGTC | 3 cut(s) | 423, 859, 1330 |
| PpuMI | RGGWCCY | 1 cut(s) | 658 |
| Psp5II | RGGWCCY | 1 cut(s) | 658 |
| Psp6I | CCWGG | 6 cut(s) | 508, 550, 660, 706, 754, 1312 |
| PspGI | CCWGG | 6 cut(s) | 508, 550, 660, 706, 754, 1312 |
| PspN4I | GGNNCC | 2 cut(s) | 814, 1252 |
| PspPI | GGNCC | 3 cut(s) | 110, 658, 1250 |
| PspPPI | RGGWCCY | 1 cut(s) | 658 |
| PstI | CTGCAG | 3 cut(s) | 136, 1114, 1206 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1201 |
| RsaI | GTAC | 2 cut(s) | 447, 1236 |
| RsaNI | GTAC | 2 cut(s) | 446, 1235 |
| RseI | CAYNNNNRTG | 1 cut(s) | 624 |
| SaqAI | TTAA | 5 cut(s) | 386, 614, 717, 1139, 1158 |
| SatI | GCNGC | 4 cut(s) | 249, 765, 1110, 1113 |
| Sau3AI | GATC | 6 cut(s) | 22, 583, 820, 1063, 1126, 1132 |
| Sau96I | GGNCC | 3 cut(s) | 110, 658, 1250 |
| SchI | GAGTC | 3 cut(s) | 423, 860, 1331 |
| ScrFI | CCNGG | 6 cut(s) | 510, 552, 662, 708, 756, 1314 |
| SduI | GDGCHC | 2 cut(s) | 736, 1334 |
| SexAI | ACCWGGT | 1 cut(s) | 754 |
| SfcI | CTRYAG | 3 cut(s) | 132, 1110, 1202 |
| SinI | GGWCC | 2 cut(s) | 110, 658 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 624 |
| SmlI | CTYRAG | 1 cut(s) | 998 |
| SmoI | CTYRAG | 1 cut(s) | 998 |
| SphI | GCATGC | 1 cut(s) | 608 |
| Sse9I | AATT | 8 cut(s) | 208, 262, 375, 569, 899, 1021, 1101, 1142 |
| SsiI | CCGC | 2 cut(s) | 765, 992 |
| SspMI | CTAG | 1 cut(s) | 1106 |
| StyD4I | CCNGG | 6 cut(s) | 508, 550, 660, 706, 754, 1312 |
| StyI | CCWWGG | 1 cut(s) | 1011 |
| TaiI | ACGT | 5 cut(s) | 447, 537, 792, 863, 1236 |
| TasI | AATT | 8 cut(s) | 208, 262, 375, 569, 899, 1021, 1101, 1142 |
| TauI | GCSGC | 1 cut(s) | 767 |
| TfiI | GAWTC | 2 cut(s) | 475, 667 |
| Tru1I | TTAA | 5 cut(s) | 386, 614, 717, 1139, 1158 |
| Tru9I | TTAA | 5 cut(s) | 386, 614, 717, 1139, 1158 |
| TscAI | CASTG | 1 cut(s) | 1039 |
| TseFI | GTSAC | 2 cut(s) | 82, 1118 |
| TseI | GCWGC | 3 cut(s) | 248, 1109, 1112 |
| Tsp45I | GTSAC | 2 cut(s) | 82, 1118 |
| TspDTI | ATGAA | 6 cut(s) | 87, 201, 332, 348, 467, 540 |
| TspGWI | ACGGA | 3 cut(s) | 101, 455, 533 |
| TspRI | CASTG | 1 cut(s) | 1039 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1034 |
| VpaK11BI | GGWCC | 2 cut(s) | 110, 658 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 423, 705 |
| XapI | RAATTY | 6 cut(s) | 208, 262, 569, 899, 1021, 1101 |
| XceI | RCATGY | 2 cut(s) | 608, 740 |
| XmnI | GAANNNNTTC | 3 cut(s) | 127, 183, 1101 |
| XspI | CTAG | 1 cut(s) | 1106 |