Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

59761381 .. 59773336

Gene Structure 11956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4104 bp

ATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGACGAGTCTGACGATGATGGTGATTTTGGGACTGGAAAACCTGCTCAGGAAAAGTTTGAGAAGATTGTTAGGATTGACGCGAAAGATAATTCCTGTCAAGCGTGTGGGGAAAGCGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCGTTAAAGGCTCCTCTCCTGACAGCTGGCGATGTCCGGAATGTGAGCCCTCTGACTGACATTGACAAGATTCTGGATTGTGAAATGCGACCTACTGTGGCCGATGATAGTGATGCCTCAAAGCTGGGTTCAAAGCAAATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGATTATCATATCTACATTGCACATGGATTCCTGAGAAAGAATTTATCAAAGCGTTCAAGACGTACCCACGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGTTCTTCAAATAATAACACAGATGATGAATTTGTTGCCATTCGACCTGAATGGACAACTGTTGATCGGATCCTTGCTTGCAGGGGCGACGATGAGAAGCAATATCTTGTAAAGTGGAAAGAACTTCCTTACGATGAATGCTATTGGGAGGTGGAGGCTGATATCTCGACATTTCAACCAGAAATAGAGAGATTCCATAAAATACAGTCTAGATCTCAGAAATTGTCTGGTAAGCAGAAGAGTAGTCTTAAAGATGCTCTTGAACCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTCGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCCTATCAGCTTGAAGGTCTGAACTTCTTACGTTTCTCCTGGTCCAAACAAACTCATGTCATACTTGCAGACGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTCTTTGAAGAGAGAGTCTATCCACATCTAGTGGTGGCTCCACTTTCAACATTACGAAATTGGGAACGGGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATACGTGAATACGAATTTTACTTCCCCAAAAATCACAAGAAGATCAAGAAAAAGAAATCTGGTCAGATCAGTGGGGAAAGCAAGCAAGATAGGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAACTTGGACTCTACATCACTGAAACCGATAAAGTGGGAGTGTATGATTGTTGATGAAGGGCATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTACTGGTCTAATCATCGCACATTGCTGACTGGAACTCCTCTTCAGAACAATCTGGACGAACTTTTCATGCTTATGCACTTCCTCGATGCTGCCAAGTTTGCAAGTCTAGAGGAGTTCCAGGAAGAGTTTAAGGATATAAATCAAGAGGAGCAGATCTCCAGGCTTCACAAAATACTTGCTCCTCATCTTCTTAGAAGGGTGAAAAAAGATGTCATGAAAGAACTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGCAAGCAGAAAGAATATTACAAAGCAATTCTGACTCGTAACTATCAGATACTGACTCGTCGCGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAATTGCGCAAGCTCTGTTGTCATGCTTATATGCTAGAGGGAGTCGAACCGGACATAGAAGATGCCAATGAATCTCACAAACAACTTTTGGAATCTTCTGGAAAACTCCAAGTATTGGACAAAATGCTGGTGAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAACACATGTTGGATTTGTTAGAAGACTACTGTACATACAAAAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTTAATGCCAAAAACTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGCGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACGATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGTTAAAGGCTCAAAACATCAACCAGGAAGAGCTCGATGACATCATTAGATATGGATCCAAGGAGTTATTTGCTGATGAAAATGATGAAGTAGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGATAGATTACTTGATCGTGAACAAGCTGGGGATGATGATGCTGTGTTGGAGGACGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGATGAAGCAGAGGCCGTAGAAGAGGAGGAACCAGAAAAGGCTGCAGCGGACAGTAGACCTACAGAAAGTGTTGCAGAGAAGACAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGAAGATGATCTTGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTATGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGCACCTCTTTCTGGAACTCTTTCTGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGTGGATAGTGCAGAACCCCCTCCTTTGATGGAAGGAGAAGGAAGATCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTACATTTGTACAAATTTTGATGAGGTTTGGGATGGGGGATTATGACTGGAAGGAGTTTGTAGCACGCATGAAGAAGACATATGAAGAAATAAAAGCTTATGGTACTCTATTCTTGGAACACATAGTTGAACAACCATTAACAGACTCCCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAGGATACAAGACGTACTTGTTCGGATTTCTGTTATGTCTATGATTCATCAGAAAGCAAAATTTGCAACAGAAAATCCAGGCGCTCCTTTGTATGAAGATGACATCATGTTCCGTTACCCAGGACTGAAGGGTAGCAAATATTGGAAGGAGTATCATGATGGAATATTACTGCGTGCCGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAGGAGTTGAATCTTCCTTTTATGAATTTTCCTGTCCCAGGGCAGGTTAAAGCACAAAATACTGAAGTACCTGGAAACGCTGCTGGAAATGGTAATGGAAATGACGTAGGAGAAAATGTAGTTCAGGGAACCATTGATCCAGCAAACCAACCTCAATCATATCAAGAGTCTTCTACGTTGCATCATTTTAGAGATATGCAAAGAAGATTGGTAGAATTCATCAAGCGAAGAGTGCTTCTCTTGGAGAAAGGCAACAATGCAGAAGCCCAGAAAGAATACTTTGTAAAAGGAAACCATGGGACAAATCTGCCATACACTGGGGAGACTGATAAGCAAATGGGCGATCAGTTGCCAAGAGTTGAAGAAATCGGTTCGGAAGAAATTTTAGCTGCAGCTTGTGACAACGATCCAGATCGTTTAAAATTGCCTCAGCTTTATAATGAGATGTGCAAACTAGTGGAAGGAACTGCCCCTCAGTCACTGCAGACTTCTTTTGAAACTATCTGCGAAGACATACTAAGCAGGACTCGCCCCCCTGTGCAACAAAATCCTCCTACCTCAGCACAGCCAACACTAAATGCAGATAGACAACCAGGAGATGAGTCTAAGAGCAATCTTGTAGTCCCTGAATCACCCTCTGCACAAGATAATGCTGCTCCTGCAGCTGAAGTTCAAATGGGAGATTTGGCAACAGAACCCAAGCCCGAAATTGTGGAGTTAGACTCCCGCAACACAGCAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1367

Amino Acids

156.33

Weight (kDa)

5.44

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chromo	PF00385	112 - 152	1.6e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	190 - 237	7.6e-14	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	280 - 461	1.4e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	284 - 580	6.9e-80	SNF2-related domain
HDA2-3	PF11496	533 - 745	3.3e-09	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	604 - 717	1.1e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	840 - 900	1.6e-23	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	936 - 1068	2.5e-55	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	54, 3795
Acc16I	TGCGCA	2 cut(s)	26, 1715
Acc36I	ACCTGC	2 cut(s)	109, 3391
AccB1I	GGYRCC	1 cut(s)	1051
AccB7I	CCANNNNNTGG	2 cut(s)	1822, 3674
AccI	GTMKAC	1 cut(s)	2554
AccII	CGCG	2 cut(s)	140, 1671
AccIII	TCCGGA	1 cut(s)	270
AciI	CCGC	5 cut(s)	1100, 1671, 2046, 2546, 4084
AclWI	GGATC	7 cut(s)	574, 587, 1205, 2310, 2323, 3488, 3758
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	5 cut(s)	1370, 2775, 3251, 3441, 4044
AdeI	CACNNNGTG	1 cut(s)	1864
AfaI	GTAC	8 cut(s)	470, 838, 1346, 1918, 2931, 3025, 3120, 3426
AfiI	CCNNNNNNNGG	7 cut(s)	241, 1822, 2795, 3098, 3395, 3400, 3674
AflII	CTTAAG	1 cut(s)	1844
AflIII	ACRYGT	1 cut(s)	1890
AhlI	ACTAGT	1 cut(s)	3811
AjiI	CACGTC	1 cut(s)	476
AjuI	GAANNNNNNNTTGG	2 cut(s)	2222, 2254
AloI	GAACNNNNNNTCC	2 cut(s)	3478, 3510
Alw21I	GWGCWC	3 cut(s)	1681, 2140, 2295
Alw26I	GTCTC	4 cut(s)	188, 1307, 1966, 3674
Alw44I	GTGCAC	1 cut(s)	1677
AlwI	GGATC	7 cut(s)	574, 587, 1205, 2310, 2323, 3488, 3758
AlwNI	CAGNNNCTG	2 cut(s)	1660, 3838
Aor13HI	TCCGGA	1 cut(s)	270
AoxI	GGCC	3 cut(s)	333, 2469, 2511
ApaLI	GTGCAC	1 cut(s)	1677
Asp700I	GAANNNNTTC	1 cut(s)	2803
AspLEI	GCGC	3 cut(s)	27, 1716, 3188
AspS9I	GGNCC	2 cut(s)	888, 3331
AsuHPI	GGTGA	5 cut(s)	92, 1555, 1849, 2176, 3981
AsuII	TTCGAA	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	888, 3331
BaeGI	GKGCMC	3 cut(s)	1054, 1681, 1860
BaeI	ACNNNNGTAYC	2 cut(s)	3408, 3441
BamHI	GGATCC	2 cut(s)	579, 2315
BanI	GGYRCC	1 cut(s)	1051
BanII	GRGCYC	3 cut(s)	284, 2140, 2295
BauI	CACGAG	1 cut(s)	2187
BbsI	GAAGAC	5 cut(s)	1914, 2585, 3002, 3519, 3873
Bbv12I	GWGCWC	3 cut(s)	1681, 2140, 2295
BbvCI	CCTCAGC	2 cut(s)	3786, 3916
BceAI	ACGGC	2 cut(s)	2498, 3266
BciVI	GTATCC	1 cut(s)	3102
BclI	TGATCA	1 cut(s)	2082
BcoDI	GTCTC	4 cut(s)	188, 1307, 1966, 3674
BcuI	ACTAGT	1 cut(s)	3811
BfaI	CTAG	8 cut(s)	30, 720, 995, 1451, 1742, 2037, 2133, 3812
BfmI	CTRYAG	5 cut(s)	2541, 2559, 3747, 3839, 4017
BfoI	RGCGCY	1 cut(s)	3189
BfrI	CTTAAG	1 cut(s)	1844
BfuAI	ACCTGC	2 cut(s)	109, 3391
BfuI	GTATCC	1 cut(s)	3102
BglII	AGATCT	2 cut(s)	722, 1497
BmcAI	AGTACT	1 cut(s)	1346
Bme18I	GGWCC	2 cut(s)	888, 3331
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	888, 3331
BmiI	GGNNCC	7 cut(s)	246, 581, 1005, 1053, 2317, 2529, 3487
BmrI	ACTGGG	1 cut(s)	3684
BmuI	ACTGGG	1 cut(s)	3684
BpiI	GAAGAC	5 cut(s)	1914, 2585, 3002, 3519, 3873
BplI	GAGNNNNNCTC	6 cut(s)	1484, 1516, 3579, 3611, 4064, 4096
BpmI	CTGGAG	2 cut(s)	852, 1486
Bpu10I	CCTNAGC	3 cut(s)	105, 3786, 3916
Bpu14I	TTCGAA	1 cut(s)	807
Bsa29I	ATCGAT	1 cut(s)	1990
BsaAI	YACGTR	1 cut(s)	1109
BsaBI	GATNNNNATC	4 cut(s)	1482, 2103, 2314, 3768
BsaJI	CCNNGG	6 cut(s)	2319, 3223, 3334, 3394, 3395, 3652
BsaWI	WCCGGW	2 cut(s)	270, 1756
BsaXI	ACNNNNNCTCC	4 cut(s)	1363, 1393, 3459, 3489
Bsc4I	CCNNNNNNNGG	7 cut(s)	241, 1822, 2795, 3098, 3395, 3400, 3674
Bse1I	ACTGG	5 cut(s)	97, 1352, 1378, 2972, 3679
Bse3DI	GCAATG	2 cut(s)	421, 1364
Bse8I	GATNNNNATC	4 cut(s)	1482, 2103, 2314, 3768
BseAI	TCCGGA	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	1990
BseDI	CCNNGG	6 cut(s)	2319, 3223, 3334, 3394, 3395, 3652
BseGI	GGATG	5 cut(s)	844, 2428, 2743, 2770, 2958
BseJI	GATNNNNATC	4 cut(s)	1482, 2103, 2314, 3768
BseLI	CCNNNNNNNGG	7 cut(s)	241, 1822, 2795, 3098, 3395, 3400, 3674
BseMI	GCAATG	2 cut(s)	421, 1364
BseMII	CTCAG	8 cut(s)	119, 429, 740, 1959, 3118, 3800, 3845, 3930
BseNI	ACTGG	5 cut(s)	97, 1352, 1378, 2972, 3679
BseRI	GAGGAG	6 cut(s)	237, 1371, 1469, 1505, 1515, 2537
BseSI	GKGCMC	3 cut(s)	1054, 1681, 1860
BseYI	CCCAGC	2 cut(s)	358, 2417
BsgI	GTGCAG	3 cut(s)	2769, 2868, 3981
Bsh1236I	CGCG	2 cut(s)	140, 1671
BshFI	GGCC	3 cut(s)	335, 2471, 2513
BshNI	GGYRCC	1 cut(s)	1051
BshVI	ATCGAT	1 cut(s)	1990
BsiHKAI	GWGCWC	3 cut(s)	1681, 2140, 2295
BsiSI	CCGG	2 cut(s)	271, 1757
BslFI	GGGAC	6 cut(s)	103, 939, 3074, 3377, 3670, 3965
BslI	CCNNNNNNNGG	7 cut(s)	241, 1822, 2795, 3098, 3395, 3400, 3674
BsmAI	GTCTC	4 cut(s)	188, 1307, 1966, 3674
BsmBI	CGTCTC	1 cut(s)	1307
BsmFI	GGGAC	6 cut(s)	103, 939, 3074, 3377, 3670, 3965
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	3 cut(s)	335, 2471, 2513
Bsp119I	TTCGAA	1 cut(s)	807
Bsp1286I	GDGCHC	6 cut(s)	284, 1054, 1681, 1860, 2140, 2295
Bsp13I	TCCGGA	1 cut(s)	270
Bsp1407I	TGTACA	2 cut(s)	1916, 2929
Bsp19I	CCATGG	1 cut(s)	3652
BspACI	CCGC	5 cut(s)	1100, 1671, 2046, 2546, 4084
BspANI	GGCC	3 cut(s)	335, 2471, 2513
BspCNI	CTCAG	8 cut(s)	118, 430, 739, 1960, 3117, 3799, 3844, 3929
BspDI	ATCGAT	1 cut(s)	1990
BspEI	TCCGGA	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	140, 1671
BspHI	TCATGA	2 cut(s)	1557, 3259
BspLI	GGNNCC	7 cut(s)	246, 581, 1005, 1053, 2317, 2529, 3487
BspMAI	CTGCAG	4 cut(s)	2545, 3751, 3843, 4021
BspMI	ACCTGC	2 cut(s)	109, 3391
BspPI	GGATC	7 cut(s)	574, 587, 1205, 2310, 2323, 3488, 3758
BspQI	GCTCTTC	2 cut(s)	1090, 2283
BspT104I	TTCGAA	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	1051
BspTI	CTTAAG	1 cut(s)	1844
BsrDI	GCAATG	2 cut(s)	421, 1364
BsrGI	TGTACA	2 cut(s)	1916, 2929
BsrI	ACTGG	5 cut(s)	97, 1352, 1378, 2972, 3679
BssECI	CCNNGG	6 cut(s)	2319, 3223, 3334, 3394, 3395, 3652
BssSI	CACGAG	1 cut(s)	2187
BssT1I	CCWWGG	2 cut(s)	2319, 3652
Bst2BI	CACGAG	1 cut(s)	2187
Bst4CI	ACNGT	8 cut(s)	331, 571, 717, 804, 815, 1916, 2080, 2552
BstAFI	CTTAAG	1 cut(s)	1844
BstAPI	GCANNNNNTGC	3 cut(s)	215, 1864, 3167
BstAUI	TGTACA	2 cut(s)	1916, 2929
BstBAI	YACGTR	1 cut(s)	1109
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	9 cut(s)	262, 589, 1187, 1613, 1718, 2044, 2986, 3279, 3312
BstDSI	CCRYGG	1 cut(s)	3652
BstENI	CCTNNNNNAGG	2 cut(s)	3096, 3393
BstF5I	GGATG	5 cut(s)	844, 2428, 2743, 2770, 2958
BstFNI	CGCG	2 cut(s)	140, 1671
BstH2I	RGCGCY	1 cut(s)	3189
BstHHI	GCGC	3 cut(s)	27, 1716, 3188
BstMAI	GTCTC	4 cut(s)	188, 1307, 1966, 3674
BstNSI	RCATGY	2 cut(s)	201, 1894
BstSFI	CTRYAG	5 cut(s)	2541, 2559, 3747, 3839, 4017
BstSLI	GKGCMC	3 cut(s)	1054, 1681, 1860
BstUI	CGCG	2 cut(s)	140, 1671
BstV2I	GAAGAC	5 cut(s)	1914, 2585, 3002, 3519, 3873
BstX2I	RGATCY	4 cut(s)	579, 722, 1497, 2315
BstYI	RGATCY	4 cut(s)	579, 722, 1497, 2315
Bsu15I	ATCGAT	1 cut(s)	1990
BsuI	GTATCC	1 cut(s)	3102
BsuRI	GGCC	3 cut(s)	335, 2471, 2513
BsuTUI	ATCGAT	1 cut(s)	1990
BtgI	CCRYGG	1 cut(s)	3652
BtgZI	GCGATG	2 cut(s)	279, 1343
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	5 cut(s)	844, 2428, 2743, 2770, 2958
BtsI	GCAGTG	2 cut(s)	839, 3836
BtsIMutI	CAGTG	6 cut(s)	839, 1180, 1253, 2085, 3672, 3836
BveI	ACCTGC	2 cut(s)	109, 3391
Cac8I	GCNNGC	9 cut(s)	262, 589, 1187, 1613, 1718, 2044, 2986, 3279, 3312
CaiI	CAGNNNCTG	2 cut(s)	1660, 3838
CciI	TCATGA	2 cut(s)	1557, 3259
CfoI	GCGC	3 cut(s)	27, 1716, 3188
Cfr13I	GGNCC	2 cut(s)	888, 3331
ClaI	ATCGAT	1 cut(s)	1990
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	8 cut(s)	469, 837, 1345, 1917, 2930, 3024, 3119, 3425
CviQI	GTAC	8 cut(s)	469, 837, 1345, 1917, 2930, 3024, 3119, 3425
DraI	TTTAAA	2 cut(s)	2466, 3777
DraIII	CACNNNGTG	1 cut(s)	1864
EaeI	YGGCCR	1 cut(s)	333
Ecl136II	GAGCTC	2 cut(s)	2138, 2293
Eco130I	CCWWGG	2 cut(s)	2319, 3652
Eco147I	AGGCCT	1 cut(s)	2471
Eco24I	GRGCYC	3 cut(s)	284, 2140, 2295
Eco32I	GATATC	2 cut(s)	673, 1686
Eco47I	GGWCC	2 cut(s)	888, 3331
Eco53kI	GAGCTC	2 cut(s)	2138, 2293
Eco57I	CTGAAG	5 cut(s)	1370, 2775, 3251, 3441, 4044
EcoICRI	GAGCTC	2 cut(s)	2138, 2293
EcoNI	CCTNNNNNAGG	2 cut(s)	3096, 3393
EcoO109I	RGGNCCY	1 cut(s)	3331
EcoRI	GAATTC	1 cut(s)	3572
EcoRV	GATATC	2 cut(s)	673, 1686
EcoT14I	CCWWGG	2 cut(s)	2319, 3652
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	3 cut(s)	284, 2140, 2295
ErhI	CCWWGG	2 cut(s)	2319, 3652
Esp3I	CGTCTC	1 cut(s)	1307
FalI	AAGNNNNNCTT	6 cut(s)	753, 785, 2685, 2717, 3105, 3137
FaqI	GGGAC	6 cut(s)	103, 939, 3074, 3377, 3670, 3965
FauI	CCCGC	1 cut(s)	4091
FauNDI	CATATG	2 cut(s)	1225, 3001
FbaI	TGATCA	1 cut(s)	2082
FblI	GTMKAC	1 cut(s)	2554
FokI	GGATG	5 cut(s)	831, 2435, 2750, 2777, 2965
FriOI	GRGCYC	3 cut(s)	284, 2140, 2295
FspBI	CTAG	8 cut(s)	30, 720, 995, 1451, 1742, 2037, 2133, 3812
FspI	TGCGCA	2 cut(s)	26, 1715
GlaI	GCGC	3 cut(s)	26, 1715, 3187
GsaI	CCCAGC	2 cut(s)	362, 2421
GsuI	CTGGAG	2 cut(s)	852, 1486
HaeII	RGCGCY	1 cut(s)	3189
HaeIII	GGCC	3 cut(s)	335, 2471, 2513
HapII	CCGG	2 cut(s)	271, 1757
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	3 cut(s)	27, 1716, 3188
Hin6I	GCGC	3 cut(s)	25, 1714, 3186
HinP1I	GCGC	3 cut(s)	25, 1714, 3186
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	3015
HpaI	GTTAAC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	271, 1757
HphI	GGTGA	5 cut(s)	92, 1555, 1849, 2176, 3981
Hpy166II	GTNNAC	6 cut(s)	227, 493, 839, 1679, 2411, 2555
Hpy8I	GTNNAC	6 cut(s)	227, 493, 839, 1679, 2411, 2555
Hpy99I	CGWCG	2 cut(s)	602, 1671
HpyCH4III	ACNGT	8 cut(s)	331, 571, 717, 804, 815, 1916, 2080, 2552
HpyCH4IV	ACGT	7 cut(s)	467, 475, 877, 1108, 3117, 3462, 3533
HpySE526I	ACGT	7 cut(s)	467, 475, 877, 1108, 3117, 3462, 3533
HspAI	GCGC	3 cut(s)	25, 1714, 3186
Kpn2I	TCCGGA	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	2082
KspAI	GTTAAC	1 cut(s)	493
LguI	GCTCTTC	2 cut(s)	1090, 2283
LmnI	GCTCC	8 cut(s)	250, 1009, 1492, 1528, 1964, 2242, 3193, 4018
MaeI	CTAG	8 cut(s)	30, 720, 995, 1451, 1742, 2037, 2133, 3812
MaeII	ACGT	7 cut(s)	467, 475, 877, 1108, 3117, 3462, 3533
MaeIII	GTNAC	5 cut(s)	1646, 2758, 3218, 3755, 3834
MflI	RGATCY	4 cut(s)	579, 722, 1497, 2315
MhlI	GDGCHC	6 cut(s)	284, 1054, 1681, 1860, 2140, 2295
MmeI	TCCRAC	3 cut(s)	1875, 2236, 2418
Mph1103I	ATGCAT	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	2803
MslI	CAYNNNNRTG	3 cut(s)	1415, 2376, 3297
MspA1I	CMGCKG	3 cut(s)	260, 2546, 4022
MspCI	CTTAAG	1 cut(s)	1844
MspI	CCGG	2 cut(s)	271, 1757
Mva1269I	GAATGC	1 cut(s)	653
MvnI	CGCG	2 cut(s)	140, 1671
NcoI	CCATGG	1 cut(s)	3652
NdeI	CATATG	2 cut(s)	1225, 3001
NlaIV	GGNNCC	7 cut(s)	246, 581, 1005, 1053, 2317, 2529, 3487
NmuCI	GTSAC	3 cut(s)	2758, 3755, 3834
NsbI	TGCGCA	2 cut(s)	26, 1715
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	2 cut(s)	201, 1894
NspV	TTCGAA	1 cut(s)	807
PagI	TCATGA	2 cut(s)	1557, 3259
PasI	CCCWGGG	1 cut(s)	3395
PceI	AGGCCT	1 cut(s)	2471
PciI	ACATGT	1 cut(s)	1890
PciSI	GCTCTTC	2 cut(s)	1090, 2283
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	2803
PflMI	CCANNNNNTGG	2 cut(s)	1822, 3674
PfoI	TCCNGGA	1 cut(s)	1461
Ppu21I	YACGTR	1 cut(s)	1109
PpuMI	RGGWCCY	1 cut(s)	3331
PscI	ACATGT	1 cut(s)	1890
PsiI	TTATAA	2 cut(s)	54, 3795
Psp124BI	GAGCTC	2 cut(s)	2140, 2295
Psp5II	RGGWCCY	1 cut(s)	3331
PspFI	CCCAGC	2 cut(s)	358, 2417
PspN4I	GGNNCC	7 cut(s)	246, 581, 1005, 1053, 2317, 2529, 3487
PspPI	GGNCC	2 cut(s)	888, 3331
PspPPI	RGGWCCY	1 cut(s)	3331
PsrI	GAACNNNNNNTAC	2 cut(s)	1575, 1607
PstI	CTGCAG	4 cut(s)	2545, 3751, 3843, 4021
PstNI	CAGNNNCTG	2 cut(s)	1660, 3838
PsuI	RGATCY	4 cut(s)	579, 722, 1497, 2315
PvuII	CAGCTG	2 cut(s)	260, 4022
RsaI	GTAC	8 cut(s)	470, 838, 1346, 1918, 2931, 3025, 3120, 3426
RsaNI	GTAC	8 cut(s)	469, 837, 1345, 1917, 2930, 3024, 3119, 3425
RseI	CAYNNNNRTG	3 cut(s)	1415, 2376, 3297
SacI	GAGCTC	2 cut(s)	2140, 2295
SapI	GCTCTTC	2 cut(s)	1090, 2283
Sau96I	GGNCC	2 cut(s)	888, 3331
ScaI	AGTACT	1 cut(s)	1346
SduI	GDGCHC	6 cut(s)	284, 1054, 1681, 1860, 2140, 2295
SfcI	CTRYAG	5 cut(s)	2541, 2559, 3747, 3839, 4017
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	2 cut(s)	888, 3331
SmiMI	CAYNNNNRTG	3 cut(s)	1415, 2376, 3297
SmlI	CTYRAG	1 cut(s)	1844
SmoI	CTYRAG	1 cut(s)	1844
SpeI	ACTAGT	1 cut(s)	3811
SseBI	AGGCCT	1 cut(s)	2471
SsiI	CCGC	5 cut(s)	1100, 1671, 2046, 2546, 4084
SspI	AATATT	4 cut(s)	58, 1625, 3245, 3270
SspMI	CTAG	8 cut(s)	30, 720, 995, 1451, 1742, 2037, 2133, 3812
SstI	GAGCTC	2 cut(s)	2140, 2295
StuI	AGGCCT	1 cut(s)	2471
StyI	CCWWGG	2 cut(s)	2319, 3652
TaaI	ACNGT	8 cut(s)	331, 571, 717, 804, 815, 1916, 2080, 2552
TaiI	ACGT	7 cut(s)	470, 478, 880, 1111, 3120, 3465, 3536
TaqI	TCGA	8 cut(s)	553, 677, 807, 1428, 1752, 1990, 2143, 2295
TaqII	GACCGA	1 cut(s)	54
TatI	WGTACW	3 cut(s)	1344, 1916, 2929
TauI	GCSGC	1 cut(s)	2049
TscAI	CASTG	6 cut(s)	846, 1180, 1260, 2085, 3679, 3843
TseFI	GTSAC	3 cut(s)	2758, 3755, 3834
Tsp45I	GTSAC	3 cut(s)	2758, 3755, 3834
TspGWI	ACGGA	2 cut(s)	2777, 3206
TspRI	CASTG	6 cut(s)	846, 1180, 1260, 2085, 3679, 3843
Van91I	CCANNNNNTGG	2 cut(s)	1822, 3674
Vha464I	CTTAAG	1 cut(s)	1844
VneI	GTGCAC	1 cut(s)	1677
VpaK11BI	GGWCC	2 cut(s)	888, 3331
XagI	CCTNNNNNAGG	2 cut(s)	3096, 3393
XbaI	TCTAGA	2 cut(s)	719, 1450
XceI	RCATGY	2 cut(s)	201, 1894
XmiI	GTMKAC	1 cut(s)	2554
XmnI	GAANNNNTTC	1 cut(s)	2803
XspI	CTAG	8 cut(s)	30, 720, 995, 1451, 1742, 2037, 2133, 3812
ZrmI	AGTACT	1 cut(s)	1346
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.