Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

2158709 .. 2162499

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0013500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3315 bp

ATGACTTCTCTGGTCAATGCAGAAGCCAATTCTTCATCTTCTTCTCTCCCACTTTCTTCTACTGATCACCAAAAACATTACACATACGAGGTCTTCCTGAGTTTTCGAGGCGAGGATACACGCTTTAATTTTACAGATCATTTGTATACTGCTCTGTGTCAGAAGGGAATTGAGACCTTCAGAGATGATAAGCTTAGCAGAGGAGAAGACATATCACAAGAGCTCCTCAAAGCAATTGAGGAGTCCAGAGTTTCAATCGTTGTCTTCTCTCAAAATTATGCTTCCTCAAGGTGGTGCTTAGATGAACTGGTCAAGATACTTGACTGCAGAAAATCCAAAGGACAGAAGTTTAGAGCTGTTTTCTACAAGGTGGCTCCTTCAGATGTACGACACCAAACAGGTGCTTTCGGTGACGCATTTGCTAAAATTGATCAATGCAAATACAAGGATAGCATCGGCAAATGGAGGAAGGCTCTTGAGGAAGCAGCAACTTTGTCTGGATGGACTTTCGAGGAGGGCCGGTACGAGACTGAATTTATCAAGGAAATTGTTGAGGATTTGTTCGCCCTAGTAATAAACCCTTCATGTGAGCTGCACGTTGCTGAACATCCAATTGGCTTAGAGTCTTGTAGACAAGAGGTCAACAAACTTTTAGATGCCGAGAAGAATAACATGGTTGGCATATGGGGGCCTGGTGGAATAGGAAAGACCACAATTGCGAAGGATGTGTTTAATTCAATTCGCCATAAGTTTGAAAATAGTTGTTTCTTGACAGATTTTAGATCAAAAGGCCTAGCCCAACTGCAAGAGACACTTTTGTCTCATATTTTAAACTCAACTTTGAAGGTGAGCAATGTTGATCAAGGAGTCAGTTTTATAAAGACAAGGATGCGACATAAAAAAGTCCTCTTAATCCTTGATGACGTGAGTGATTCTAGCCAATTACAGAAATTAGTTCCATCCCCTGATTGTTTTGGGCGTGGCAGTAGAATTCTCATAACAACAAGAGATAAACGTTGGCTAATTGCTCATAAAGTTGATGAAGTATACGAGGTCAAGATGTTAAATGATCGTCTTGCTTTGGAGTTGTTTAGTTTGCATGCATTCAGAAGAAATGGACCTCCAAGTGATTATTTGAAACTTGCACAACGTGCAGTACACTATGCCCAAGGCCTTCCATTAGCTTTGATAGTTTTAGGCTCTCATCTATTTTGTAGAAGCATAGAGGAGTGGAAAGCTATAATAGGTAGTTGTAAAGGAGGTCCTCAGGCAAAGATACAAGATGTTCTCAAACTGAGTTATGATGCTCTAGAAGCAGATTTAAAAGAACTATTTCTTGATATCGCTTGCTTCTTTAAAGGTAAGCGTGTAGCCCGTGTGAAACCAATACTAGAAGCTTGCTACGACCACAAAACAATGATGATTGGTATTGCACATCTCCAAGAAAAAGCCTTGATAAGAATTGACAGAGATAAGATTTGGATGCATGACTTGATAGAAGAAATGGGTAAAGACATAGTGTATCAAGAGTCACCGGATGAACCCGGGGAACGCAGCAGAGTGTGGAGTGAAGAAGATGTCAACGACTTTCTAACAAATAATACAGGAACAAATAAAGTTATAAGCATTCAGGTCCCGTGGCTATCATCTACGATATCTTTGAATGCTAAAAGCTTCTTAGAGATGAAGAAGCTTAGATATATTTCTATGAGCATAGGTATGAAATATGAATCCTTTTCTAGAGATATTGAGTATCTCTCTGACCAGTTGAGGTGGCTTGATTGGCCAGAATGTCCGTTGCAATGTTTTCCATCCAATTTTCATGCAAAGAAACTTGTAAATCTCAATATTATTGGGAGTTGCAGAATCACACGACTATGGAAGGGACATAAGAATTTTTCAAGGCTAACATGTATGAATTTAAGTGGTTGTACATCCCTAAAGGAACTCCCAGACTTTAGTGGAATCCCTAACTTGAAAAGGTTGGATCTATATGAGTGTAACAGTTTAGTTGAGATTCCTGATTCAATTCGATTCCTTCATAACCTTGTTACCTTGAATGTTGACCATTGCTCTAACCTTATTATGTTTCCAAAAAAAATTAACTTGAGATCTATAGAAACTATTTCTGTTAGCTATTGCAAGCTTGAGGAATTTTCAGAATTTGGGGAAGAGATGTATTTCTTGAGAGAATTGAATCTAATAGGCACTTGCATTAAAGAATTGCATACGTCCATTACAAAACTTATTAGGCTGGAAGAGTTGGACCTACAGGACAATCAAAATCTTACGACCCTGCCGTATAATATTTATGAGTTGCACAATCTAAAGGGTCTTGGTGCAATTGGATGCTCAAAACTGGCTATATTTCCAAAAGTTCCAGTAAAGATGGATTCTTTGAGAGGTCTTTTTCTAGATGGTAGTGACATCAGAGAATTGGATGAGTCAATTGGAAATCTCACTGTGCTTGAAATGTTGTACCTTAGTAGTTGCAAAAATCTTACGACTCTACCGTGGAGCATTTATGGGTTACAAAATCTGAAGCGGCTTGATCTTGGTCAATGCTCAAAACTTGTTAGATTTCCAACAAATACCAACATTTTGAACGTCGATGGTTGCTCACTATCACTTCCCAAGCTACAGAGTATCGATATCAGCGGATGCACTAGTTTATCAGATTGTGATTTCCTCATGACTCTTGATTGCTGGGAAACATTAGATTCACTTGATCTGTCATATAGCAATTTTGTTAGTCTTCCTGCTTGCATCACAAAATTTGTCAACTTACGGCGGCTTGTCTTGTCCGGTTGCAAGAGACTCCGCGAAATTCCGGAGCTTCCACCAAATGTTTGCATACAAAGGACCACTTTACTGGAGTTATTGGAGGAGAGATTGTCGACATTGACAAATCCTAGAGCCGTGATAGAGGCAGCGTCGCCGTCAATTGAAGAGCCAACTCCGTCGTCATGTCTTTCTTTGTCTTCCGAAACTCCGAAACGACACCGCAGCGCGGAAGAACCATCACCAACACTAGTGAATCCTCCGAAACGACAACGCACTGCCGCCAGGGGGCAAGCATCCATGGTCCACTTTGCATATGAAATGGCTATCTCCCCAGTCCCCATGTTCCCTGACCTGCACACCGCCCATCACTCAACTACTACTCCACAGCTTCAACTCCAAGCCTTAGCAACTGAGTTGTCAAGGCTTTCTCTGTCTTCAGAACCAACAAAACCTCGTGGCCCAGTTAGAGGTGATCAACACCAGTGGCTGTCTTTGAACTCTGAACCATCCACTTCAGAGTTTAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1104

Amino Acids

125.22

Weight (kDa)

6.66

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	29 - 188	1.7e-55	TIR domain
TIR_2	PF13676	31 - 125	7.9e-15	TIR domain
ATPase_2	PF01637	212 - 312	5.8e-06	ATPase domain predominantly from Archaea
NB-ARC	PF00931	214 - 371	7e-23	NB-ARC domain
WHD_ROQ1	PF23282	442 - 511	5.8e-15	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	726 - 802	8e-06	Leucine-rich repeat region
LRR_13	PF23286	784 - 945	5.4e-18	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	799 - 858	1.7e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	878, 1622
AasI	GACNNNNNNGTC	1 cut(s)	817
Acc36I	ACCTGC	1 cut(s)	3144
AccI	GTMKAC	4 cut(s)	146, 631, 1047, 2897
AccII	CGCG	2 cut(s)	2823, 3011
AccIII	TCCGGA	1 cut(s)	2830
AciI	CCGC	8 cut(s)	2545, 2658, 2791, 2821, 3004, 3011, 3063, 3144
AclI	AACGTT	1 cut(s)	1015
AclWI	GGATC	1 cut(s)	1995
AcoI	YGGCCR	1 cut(s)	1784
AcsI	RAATTY	8 cut(s)	533, 990, 1894, 1918, 2153, 2162, 2774, 2826
AcuI	CTGAAG	5 cut(s)	163, 363, 2561, 3204, 3282
AdeI	CACNNNGTG	1 cut(s)	1151
AfaI	GTAC	5 cut(s)	387, 524, 1158, 1933, 2480
AfiI	CCNNNNNNNGG	4 cut(s)	291, 3010, 3069, 3251
AflIII	ACRYGT	1 cut(s)	1910
AhdI	GACNNNNNGTC	1 cut(s)	638
AhlI	ACTAGT	2 cut(s)	2666, 3031
AjiI	CACGTC	1 cut(s)	925
AjnI	CCWGG	2 cut(s)	691, 3065
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	5 cut(s)	167, 521, 803, 825, 2809
AlwI	GGATC	1 cut(s)	1995
AlwNI	CAGNNNCTG	1 cut(s)	3271
Ama87I	CYCGRG	1 cut(s)	1544
Aor13HI	TCCGGA	1 cut(s)	2830
AoxI	GGCC	6 cut(s)	517, 689, 790, 1171, 1784, 3241
ApeKI	GCWGC	5 cut(s)	485, 592, 1554, 2930, 3006
ApoI	RAATTY	8 cut(s)	533, 990, 1894, 1918, 2153, 2162, 2774, 2826
Asp700I	GAANNNNTTC	1 cut(s)	1332
AspLEI	GCGC	1 cut(s)	3011
AspS9I	GGNCC	9 cut(s)	517, 689, 1118, 1262, 1633, 2266, 2862, 3085, 3242
AsuC2I	CCSGG	2 cut(s)	1545, 1546
AsuHPI	GGTGA	6 cut(s)	59, 422, 859, 1524, 3015, 3266
AvaI	CYCGRG	1 cut(s)	1544
AvaII	GGWCC	6 cut(s)	1118, 1262, 1633, 2266, 2862, 3085
AxyI	CCTNAGG	1 cut(s)	1266
BalI	TGGCCA	1 cut(s)	1786
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	3237
BbsI	GAAGAC	6 cut(s)	85, 213, 256, 2747, 2973, 3210
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	5 cut(s)	497, 579, 1566, 2942, 3018
BccI	CCATC	9 cut(s)	495, 967, 1819, 2383, 2411, 2606, 3028, 3156, 3298
BceAI	ACGGC	4 cut(s)	2284, 2804, 2903, 2923
BciT130I	CCWGG	2 cut(s)	693, 3067
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	4 cut(s)	64, 430, 859, 3256
BcnI	CCSGG	2 cut(s)	1545, 1546
BcoDI	GTCTC	5 cut(s)	167, 521, 803, 825, 2809
BcuI	ACTAGT	2 cut(s)	2666, 3031
BfmI	CTRYAG	4 cut(s)	325, 2115, 2270, 2639
BfuAI	ACCTGC	1 cut(s)	3144
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	2111
BisI	GCNGC	8 cut(s)	486, 593, 1555, 2546, 2792, 2931, 3007, 3063
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	8 cut(s)	487, 594, 1556, 2547, 2793, 2932, 3008, 3064
Bme1390I	CCNGG	4 cut(s)	693, 1545, 1546, 3067
Bme18I	GGWCC	6 cut(s)	1118, 1262, 1633, 2266, 2862, 3085
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	1544
BmgBI	CACGTC	1 cut(s)	925
BmgT120I	GGNCC	9 cut(s)	517, 689, 1118, 1262, 1633, 2266, 2862, 3085, 3242
BmiI	GGNNCC	3 cut(s)	375, 690, 1635
BmrFI	CCNGG	4 cut(s)	693, 1545, 1546, 3067
BmrI	ACTGGG	2 cut(s)	3110, 3239
BmsI	GCATC	9 cut(s)	462, 646, 879, 1294, 1473, 2339, 2651, 2775, 3086
BmuI	ACTGGG	2 cut(s)	3110, 3239
BpiI	GAAGAC	6 cut(s)	85, 213, 256, 2747, 2973, 3210
BplI	GAGNNNNNCTC	4 cut(s)	457, 489, 1742, 1774
BpmI	CTGGAG	1 cut(s)	2894
Bpu10I	CCTNAGC	1 cut(s)	3187
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	5 cut(s)	271, 497, 2128, 2168, 2206
BpuMI	CCSGG	2 cut(s)	1545, 1546
Bsa29I	ATCGAT	1 cut(s)	2649
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	7 cut(s)	1168, 1544, 1545, 1637, 2513, 3066, 3081
BsaWI	WCCGGW	3 cut(s)	1534, 2804, 2830
BsaXI	ACNNNNNCTCC	8 cut(s)	207, 237, 506, 536, 2879, 2909, 3148, 3178
Bsc4I	CCNNNNNNNGG	4 cut(s)	291, 3010, 3069, 3251
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	8 cut(s)	312, 1765, 2364, 2381, 2877, 3116, 3245, 3265
Bse21I	CCTNAGG	1 cut(s)	1266
Bse3DI	GCAATG	3 cut(s)	859, 1808, 2068
BseAI	TCCGGA	1 cut(s)	2830
BseBI	CCWGG	2 cut(s)	693, 3067
BseCI	ATCGAT	1 cut(s)	2649
BseDI	CCNNGG	7 cut(s)	1168, 1544, 1545, 1637, 2513, 3066, 3081
BseLI	CCNNNNNNNGG	4 cut(s)	291, 3010, 3069, 3251
BseMI	GCAATG	3 cut(s)	859, 1808, 2068
BseMII	CTCAG	4 cut(s)	89, 1280, 1286, 3186
BseNI	ACTGG	8 cut(s)	312, 1765, 2364, 2381, 2877, 3116, 3245, 3265
BseRI	GAGGAG	6 cut(s)	215, 216, 254, 527, 1241, 2900
BseXI	GCAGC	5 cut(s)	497, 579, 1566, 2942, 3018
BseYI	CCCAGC	1 cut(s)	2706
BsgI	GTGCAG	3 cut(s)	578, 1173, 3122
Bsh1236I	CGCG	2 cut(s)	2823, 3011
BshFI	GGCC	6 cut(s)	519, 691, 792, 1173, 1786, 3243
BshVI	ATCGAT	1 cut(s)	2649
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	1544
BsiSI	CCGG	5 cut(s)	520, 1535, 1545, 2805, 2831
BslFI	GGGAC	3 cut(s)	1619, 1899, 3104
BslI	CCNNNNNNNGG	4 cut(s)	291, 3010, 3069, 3251
BsmAI	GTCTC	5 cut(s)	167, 521, 803, 825, 2809
BsmFI	GGGAC	3 cut(s)	1619, 1899, 3104
BsmI	GAATGC	3 cut(s)	1103, 1626, 1669
BsnI	GGCC	6 cut(s)	519, 691, 792, 1173, 1786, 3243
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	1544
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	2830
Bsp1407I	TGTACA	1 cut(s)	1931
Bsp1720I	GCTNAGC	1 cut(s)	194
Bsp19I	CCATGG	1 cut(s)	3081
BspACI	CCGC	8 cut(s)	2545, 2658, 2791, 2821, 3004, 3011, 3063, 3144
BspANI	GGCC	6 cut(s)	519, 691, 792, 1173, 1786, 3243
BspCNI	CTCAG	4 cut(s)	90, 1279, 1287, 3187
BspDI	ATCGAT	1 cut(s)	2649
BspEI	TCCGGA	1 cut(s)	2830
BspFNI	CGCG	2 cut(s)	2823, 3011
BspHI	TCATGA	1 cut(s)	2691
BspLI	GGNNCC	3 cut(s)	375, 690, 1635
BspMAI	CTGCAG	1 cut(s)	329
BspMI	ACCTGC	1 cut(s)	3144
BspPI	GGATC	1 cut(s)	1995
BspQI	GCTCTTC	1 cut(s)	2943
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	3 cut(s)	859, 1808, 2068
BsrFI	RCCGGY	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	1931
BsrI	ACTGG	8 cut(s)	312, 1765, 2364, 2381, 2877, 3116, 3245, 3265
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	7 cut(s)	1168, 1544, 1545, 1637, 2513, 3066, 3081
BssNAI	GTATAC	2 cut(s)	147, 1048
BssSI	CACGAG	1 cut(s)	3237
BssT1I	CCWWGG	2 cut(s)	1168, 3081
Bst1107I	GTATAC	2 cut(s)	147, 1048
Bst2BI	CACGAG	1 cut(s)	3237
Bst2UI	CCWGG	2 cut(s)	693, 3067
Bst4CI	ACNGT	3 cut(s)	2006, 2464, 2514
Bst6I	CTCTTC	3 cut(s)	2166, 2253, 2943
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstAUI	TGTACA	1 cut(s)	1931
BstC8I	GCNNGC	6 cut(s)	1101, 1348, 1399, 2144, 2764, 3075
BstDSI	CCRYGG	3 cut(s)	1637, 2513, 3081
BstFNI	CGCG	2 cut(s)	2823, 3011
BstHHI	GCGC	1 cut(s)	3011
BstMAI	GTCTC	5 cut(s)	167, 521, 803, 825, 2809
BstMWI	GCNNNNNNNGC	3 cut(s)	1151, 1313, 1783
BstNI	CCWGG	2 cut(s)	693, 3067
BstNSI	RCATGY	2 cut(s)	1103, 1914
BstSCI	CCNGG	4 cut(s)	691, 1543, 1544, 3065
BstSFI	CTRYAG	4 cut(s)	325, 2115, 2270, 2639
BstUI	CGCG	2 cut(s)	2823, 3011
BstV1I	GCAGC	5 cut(s)	497, 579, 1566, 2942, 3018
BstV2I	GAAGAC	6 cut(s)	85, 213, 256, 2747, 2973, 3210
BstX2I	RGATCY	2 cut(s)	1987, 2111
BstXI	CCANNNNNNTGG	1 cut(s)	2872
BstYI	RGATCY	2 cut(s)	1987, 2111
BstZ17I	GTATAC	2 cut(s)	147, 1048
Bsu15I	ATCGAT	1 cut(s)	2649
Bsu36I	CCTNAGG	1 cut(s)	1266
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	6 cut(s)	519, 691, 792, 1173, 1786, 3243
BsuTUI	ATCGAT	1 cut(s)	2649
BtgI	CCRYGG	3 cut(s)	1637, 2513, 3081
BtrI	CACGTC	1 cut(s)	925
BtsI	GCAGTG	1 cut(s)	3057
BtsIMutI	CAGTG	3 cut(s)	2460, 3057, 3272
BveI	ACCTGC	1 cut(s)	3144
Cac8I	GCNNGC	6 cut(s)	1101, 1348, 1399, 2144, 2764, 3075
CaiI	CAGNNNCTG	1 cut(s)	3271
CciI	TCATGA	1 cut(s)	2691
CfoI	GCGC	1 cut(s)	3011
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	9 cut(s)	517, 689, 1118, 1262, 1633, 2266, 2862, 3085, 3242
Cfr9I	CCCGGG	1 cut(s)	1544
ClaI	ATCGAT	1 cut(s)	2649
CseI	GACGC	2 cut(s)	422, 2922
Csp6I	GTAC	5 cut(s)	386, 523, 1157, 1932, 2479
CspCI	CAANNNNNGTGG	2 cut(s)	3248, 3283
CviQI	GTAC	5 cut(s)	386, 523, 1157, 1932, 2479
DraI	TTTAAA	3 cut(s)	831, 1323, 1357
DraIII	CACNNNGTG	1 cut(s)	1151
DrdI	GACNNNNNNGTC	1 cut(s)	817
DriI	GACNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	1784
Eam1104I	CTCTTC	3 cut(s)	2166, 2253, 2943
Eam1105I	GACNNNNNGTC	1 cut(s)	638
EarI	CTCTTC	3 cut(s)	2166, 2253, 2943
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	1168, 3081
Eco147I	AGGCCT	2 cut(s)	792, 1173
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	3 cut(s)	1342, 1656, 2653
Eco47I	GGWCC	6 cut(s)	1118, 1262, 1633, 2266, 2862, 3085
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	5 cut(s)	163, 363, 2561, 3204, 3282
Eco81I	CCTNAGG	1 cut(s)	1266
Eco88I	CYCGRG	1 cut(s)	1544
EcoICRI	GAGCTC	1 cut(s)	223
EcoO109I	RGGNCCY	3 cut(s)	689, 1262, 1633
EcoRI	GAATTC	1 cut(s)	990
EcoRII	CCWGG	2 cut(s)	691, 3065
EcoRV	GATATC	3 cut(s)	1342, 1656, 2653
EcoT14I	CCWWGG	2 cut(s)	1168, 3081
EcoT22I	ATGCAT	2 cut(s)	1105, 1488
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	1168, 3081
FalI	AAGNNNNNCTT	4 cut(s)	798, 830, 2851, 2883
FaqI	GGGAC	3 cut(s)	1619, 1899, 3104
FauNDI	CATATG	2 cut(s)	683, 3097
FbaI	TGATCA	4 cut(s)	64, 430, 859, 3256
FblI	GTMKAC	4 cut(s)	146, 631, 1047, 2897
Fnu4HI	GCNGC	8 cut(s)	486, 593, 1555, 2546, 2792, 2931, 3007, 3063
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	8 cut(s)	486, 593, 1555, 2546, 2792, 2931, 3007, 3063
GlaI	GCGC	1 cut(s)	3010
GluI	GCNGC	8 cut(s)	486, 593, 1555, 2546, 2792, 2931, 3007, 3063
GsaI	CCCAGC	1 cut(s)	2710
GsuI	CTGGAG	1 cut(s)	2894
HaeIII	GGCC	6 cut(s)	519, 691, 792, 1173, 1786, 3243
HapII	CCGG	5 cut(s)	520, 1535, 1545, 2805, 2831
HgaI	GACGC	2 cut(s)	422, 2922
HhaI	GCGC	1 cut(s)	3011
Hin6I	GCGC	1 cut(s)	3009
HinP1I	GCGC	1 cut(s)	3009
HincII	GTYRAC	5 cut(s)	643, 1582, 2065, 2782, 2898
HindII	GTYRAC	5 cut(s)	643, 1582, 2065, 2782, 2898
HindIII	AAGCTT	5 cut(s)	191, 1395, 1672, 1691, 2144
HpaII	CCGG	5 cut(s)	520, 1535, 1545, 2805, 2831
HphI	GGTGA	6 cut(s)	59, 422, 859, 1524, 3015, 3266
Hpy99I	CGWCG	3 cut(s)	2612, 2938, 2965
HpyCH4III	ACNGT	3 cut(s)	2006, 2464, 2514
HpyCH4IV	ACGT	6 cut(s)	597, 924, 1015, 1150, 2231, 2607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1151, 1313, 1783
HpySE526I	ACGT	6 cut(s)	597, 924, 1015, 1150, 2231, 2607
HspAI	GCGC	1 cut(s)	3009
Kpn2I	TCCGGA	1 cut(s)	2830
Ksp22I	TGATCA	4 cut(s)	64, 430, 859, 3256
LguI	GCTCTTC	1 cut(s)	2943
LmnI	GCTCC	4 cut(s)	228, 379, 2517, 2833
Lsp1109I	GCAGC	5 cut(s)	497, 579, 1566, 2942, 3018
LweI	GCATC	9 cut(s)	462, 646, 879, 1294, 1473, 2339, 2651, 2775, 3086
MaeII	ACGT	6 cut(s)	597, 924, 1015, 1150, 2231, 2607
MaeIII	GTNAC	6 cut(s)	410, 1530, 2000, 2050, 2423, 2529
MfeI	CAATTG	6 cut(s)	234, 612, 714, 2343, 2448, 2943
MflI	RGATCY	2 cut(s)	1987, 2111
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	1786
MluNI	TGGCCA	1 cut(s)	1786
MlyI	GAGTC	8 cut(s)	251, 632, 876, 1538, 2453, 2500, 2689, 2811
MmeI	TCCRAC	3 cut(s)	1965, 2244, 2609
Mox20I	TGGCCA	1 cut(s)	1786
Mph1103I	ATGCAT	2 cut(s)	1105, 1488
MroI	TCCGGA	1 cut(s)	2830
MroXI	GAANNNNTTC	1 cut(s)	1332
MscI	TGGCCA	1 cut(s)	1786
MslI	CAYNNNNRTG	2 cut(s)	1718, 1876
Msp20I	TGGCCA	1 cut(s)	1786
MspA1I	CMGCKG	1 cut(s)	2658
MspI	CCGG	5 cut(s)	520, 1535, 1545, 2805, 2831
MspR9I	CCNGG	4 cut(s)	693, 1545, 1546, 3067
MunI	CAATTG	6 cut(s)	234, 612, 714, 2343, 2448, 2943
Mva1269I	GAATGC	3 cut(s)	1103, 1626, 1669
MvaI	CCWGG	2 cut(s)	693, 3067
MvnI	CGCG	2 cut(s)	2823, 3011
MwoI	GCNNNNNNNGC	3 cut(s)	1151, 1313, 1783
NciI	CCSGG	2 cut(s)	1545, 1546
NcoI	CCATGG	1 cut(s)	3081
NdeI	CATATG	2 cut(s)	683, 3097
NlaIV	GGNNCC	3 cut(s)	375, 690, 1635
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	3 cut(s)	410, 1530, 2423
NsiI	ATGCAT	2 cut(s)	1105, 1488
NspI	RCATGY	2 cut(s)	1103, 1914
PaeI	GCATGC	1 cut(s)	1103
PagI	TCATGA	1 cut(s)	2691
PceI	AGGCCT	2 cut(s)	792, 1173
PciI	ACATGT	1 cut(s)	1910
PciSI	GCTCTTC	1 cut(s)	2943
PcsI	WCGNNNNNNNCGW	2 cut(s)	2297, 2510
PctI	GAATGC	3 cut(s)	1103, 1626, 1669
PdmI	GAANNNNTTC	1 cut(s)	1332
PkrI	GCNGC	8 cut(s)	487, 594, 1556, 2547, 2793, 2932, 3008, 3064
PleI	GAGTC	8 cut(s)	250, 631, 875, 1537, 2452, 2500, 2689, 2811
PpsI	GAGTC	8 cut(s)	250, 631, 875, 1537, 2452, 2500, 2689, 2811
PpuMI	RGGWCCY	2 cut(s)	1262, 1633
PscI	ACATGT	1 cut(s)	1910
PsiI	TTATAA	2 cut(s)	878, 1622
Psp124BI	GAGCTC	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	1015
Psp5II	RGGWCCY	2 cut(s)	1262, 1633
Psp6I	CCWGG	2 cut(s)	691, 3065
PspFI	CCCAGC	1 cut(s)	2706
PspGI	CCWGG	2 cut(s)	691, 3065
PspN4I	GGNNCC	3 cut(s)	375, 690, 1635
PspPI	GGNCC	9 cut(s)	517, 689, 1118, 1262, 1633, 2266, 2862, 3085, 3242
PspPPI	RGGWCCY	2 cut(s)	1262, 1633
PstI	CTGCAG	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	3271
PsuI	RGATCY	2 cut(s)	1987, 2111
RsaI	GTAC	5 cut(s)	387, 524, 1158, 1933, 2480
RsaNI	GTAC	5 cut(s)	386, 523, 1157, 1932, 2479
RseI	CAYNNNNRTG	2 cut(s)	1718, 1876
SacI	GAGCTC	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	2896
SapI	GCTCTTC	1 cut(s)	2943
SatI	GCNGC	8 cut(s)	486, 593, 1555, 2546, 2792, 2931, 3007, 3063
Sau96I	GGNCC	9 cut(s)	517, 689, 1118, 1262, 1633, 2266, 2862, 3085, 3242
SchI	GAGTC	8 cut(s)	251, 632, 876, 1538, 2453, 2500, 2689, 2811
ScrFI	CCNGG	4 cut(s)	693, 1545, 1546, 3067
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	9 cut(s)	462, 646, 879, 1294, 1473, 2339, 2651, 2775, 3086
SfcI	CTRYAG	4 cut(s)	325, 2115, 2270, 2639
SinI	GGWCC	6 cut(s)	1118, 1262, 1633, 2266, 2862, 3085
SmaI	CCCGGG	1 cut(s)	1546
SmiMI	CAYNNNNRTG	2 cut(s)	1718, 1876
SmlI	CTYRAG	5 cut(s)	286, 476, 2107, 2147, 2185
SmoI	CTYRAG	5 cut(s)	286, 476, 2107, 2147, 2185
SpeI	ACTAGT	2 cut(s)	2666, 3031
SphI	GCATGC	1 cut(s)	1103
SseBI	AGGCCT	2 cut(s)	792, 1173
SsiI	CCGC	8 cut(s)	2545, 2658, 2791, 2821, 3004, 3011, 3063, 3144
SspI	AATATT	2 cut(s)	1849, 2308
SstI	GAGCTC	1 cut(s)	225
StuI	AGGCCT	2 cut(s)	792, 1173
StyD4I	CCNGG	4 cut(s)	691, 1543, 1544, 3065
StyI	CCWWGG	2 cut(s)	1168, 3081
TaaI	ACNGT	3 cut(s)	2006, 2464, 2514
TaiI	ACGT	6 cut(s)	600, 927, 1018, 1153, 2234, 2610
TaqI	TCGA	6 cut(s)	106, 510, 2032, 2610, 2649, 2897
TatI	WGTACW	2 cut(s)	1156, 1931
TauI	GCSGC	3 cut(s)	2548, 2794, 3065
TscAI	CASTG	3 cut(s)	2467, 3064, 3272
TseFI	GTSAC	3 cut(s)	410, 1530, 2423
TseI	GCWGC	5 cut(s)	485, 592, 1554, 2930, 3006
Tsp45I	GTSAC	3 cut(s)	410, 1530, 2423
TspGWI	ACGGA	2 cut(s)	1785, 2949
TspMI	CCCGGG	1 cut(s)	1544
TspRI	CASTG	3 cut(s)	2467, 3064, 3272
VpaK11BI	GGWCC	6 cut(s)	1118, 1262, 1633, 2266, 2862, 3085
XapI	RAATTY	8 cut(s)	533, 990, 1894, 1918, 2153, 2162, 2774, 2826
XbaI	TCTAGA	3 cut(s)	1309, 1739, 2413
XceI	RCATGY	2 cut(s)	1103, 1914
XmaI	CCCGGG	1 cut(s)	1544
XmiI	GTMKAC	4 cut(s)	146, 631, 1047, 2897
XmnI	GAANNNNTTC	1 cut(s)	1332
Zsp2I	ATGCAT	2 cut(s)	1105, 1488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.