Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

60058461 .. 60067034

Gene Structure 8574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGAAAGAACTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGCAAGCAGAAAGAATATTACAAAGCAATTCTGACTCGTAACTATCAGATACTGACTCGTCGCGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAATTGCGCAAGCTCTGTTGTCATGCTTATATGCTAGAGGGAGTCGAACCGGACATAGAAGATGCCAATGAATCTCACAAACAACTTTTGGAATCTTCTGGAAAACTCCAAGTATTGGACAAAATGCTGGTGAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAGCACATGTTGGATTTGTTAGAAGACTACTGTACATACAAAAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTTAATGCCAAAAACTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACGATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGTTAAAGGCTCAAAACATCAACCAGGAAGAGCTCGATGACATCATTAGATATGGATCCAAGGAGTTATTTGCTGATGAAAATGATGAAGTAGGAAAATCCCGTCAAATTCATTATGATGATTCTGCGATAGATAGATTACTTGATCGTGAACAAGCTGGGGATGATGATGCTGTGTTGGAGGACGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGCCGTAGAAGAGGAGGAACCAGAAAAGGCTGCAGTGGACAGTAGACCTACAGAAAGTGTTGCAGAGAAGACAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGAAGATGATCTTGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTACGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGCACCTCTTTCTGGAACTCTTTCTGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGTGGATAGTGCAGAACCCCCTCCTTTGATGGAAGGAGAAGGAAGATCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTACATTTGTACAAATTTTGATGAGGTTTGGGATGGGGGATTATGACTGGAAGGAGTTTGTAGCACGCATGAAGAAGACATATGAAGAAATAAAAGCTTATGGTACTCTATTCTTGGAACACATAGTTGAACAACCATTAACAGACTCCCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAGGATACAAGACGTACTTGTTCGGATTTCTGTTATGTCTATGATTCATCAGAAAGCAAAGTTTGCAACAGAAAATCCAGGCGCTCCTTTGTATGAAGATGACATCATGTTCCGTTACCCAGGACTGAAGGGTAGCAAATATTGGAAGGAGTATCATGATGGAATATTACTGCGTGCCGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAGGAGTTGAATCTTCCTTTTATGAATTTTCCTGTCCCAGGGCAGGTTAAAGCACAAAATACTGAAGTACCTGGTAACGCTGCTGGAAATGGTAATGGAAATGACGTAGGAGAAAATGTAGTTCAGGGAACCGTTGATCCAGCAAACCAACCTCAATCATATCAAGAGTCTTCTACGTTGCATCATTTTAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGAAAGGCAACAATGCAGAAGCCCAGAAAGAATACTTTGATGAATTGTATGCAAATGAGATTGCGGAGCTTGAGAAGGAAACCATGGGGACAAATCTGCCATACACTGGGGAGACTGATAAGCAAATGGGCGATCAGTTGCCAAGAGTTGAAGAAATTGGTTCGGAAGAAATTTTAGCTGCAGCTTGTGACAACGATCCAGATCGTTTAAAATTGCCTCAGCTTTATAATGAGATGTGCAAACTAGTGGAAGGAACTGCCCCTCAGTCACTGCAGACTTCTTTTGAAACTATCTGCGAAGACATACTAAGCAGGACTGGCCCCCCTGTGCAACAAAATCCTCCTACCTCAGCACAGCCAACACTAAATGCAGATAGACAACCAGGAGATGAGTCTAAGAGCAATCTTGTAGTCCCTGAATCACCCTCTGCACAAGATAATGCTGCTCCTGCAGCCGAAGTTCAAATGGGAGATTTGGCAACAGAACCCAAGCCCGAAATTGCGGAGTTAGACTCCCGCAACACAGCAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

859

Amino Acids

97.17

Weight (kDa)

4.89

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	2 - 61	1.5e-07	SNF2-related domain
HDA2-3	PF11496	14 - 227	1.6e-09	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	85 - 198	5.7e-25	Helicase conserved C-terminal domain
DUF1087	PF06465	321 - 381	6.1e-24	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	417 - 549	1.3e-55	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2271
Acc16I	TGCGCA	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	1834
AccB7I	CCANNNNNTGG	2 cut(s)	265, 2150
AccI	GTMKAC	1 cut(s)	997
AccII	CGCG	1 cut(s)	114
AciI	CCGC	4 cut(s)	114, 2108, 2546, 2560
AclWI	GGATC	4 cut(s)	753, 766, 1931, 2234
AcsI	RAATTY	8 cut(s)	810, 928, 1027, 1079, 1377, 1825, 2015, 2214
AcuI	CTGAAG	3 cut(s)	1218, 1694, 1884
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	5 cut(s)	361, 1374, 1468, 1563, 1869
AfiI	CCNNNNNNNGG	6 cut(s)	265, 1238, 1541, 1838, 1843, 2150
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	333
AhlI	ACTAGT	1 cut(s)	2287
AjnI	CCWGG	8 cut(s)	455, 726, 1624, 1666, 1776, 1837, 1870, 2425
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AloI	GAACNNNNNNTCC	2 cut(s)	1921, 1953
Alw21I	GWGCWC	3 cut(s)	124, 583, 738
Alw26I	GTCTC	2 cut(s)	409, 2150
Alw44I	GTGCAC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	753, 766, 1931, 2234
AlwNI	CAGNNNCTG	2 cut(s)	103, 2314
AoxI	GGCC	3 cut(s)	912, 954, 2362
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	8 cut(s)	51, 292, 983, 1880, 2222, 2225, 2486, 2495
ApoI	RAATTY	8 cut(s)	810, 928, 1027, 1079, 1377, 1825, 2015, 2214
Asp700I	GAANNNNTTC	1 cut(s)	1246
AspLEI	GCGC	2 cut(s)	159, 1631
AspS9I	GGNCC	2 cut(s)	1774, 2363
AsuHPI	GGTGA	3 cut(s)	292, 619, 2457
AvaII	GGWCC	1 cut(s)	1774
BaeGI	GKGCMC	2 cut(s)	124, 303
BaeI	ACNNNNGTAYC	2 cut(s)	1851, 1884
BamHI	GGATCC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	583, 738
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	5 cut(s)	357, 1028, 1445, 1962, 2349
Bbv12I	GWGCWC	3 cut(s)	124, 583, 738
BbvCI	CCTCAGC	2 cut(s)	2262, 2392
BbvI	GCAGC	8 cut(s)	63, 304, 970, 1867, 2209, 2237, 2473, 2507
BceAI	ACGGC	2 cut(s)	941, 1709
BciT130I	CCWGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
BciVI	GTATCC	1 cut(s)	1545
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	409, 2150
BcuI	ACTAGT	1 cut(s)	2287
BfaI	CTAG	4 cut(s)	185, 480, 576, 2288
BfmI	CTRYAG	5 cut(s)	984, 1002, 2223, 2315, 2493
BfoI	RGCGCY	1 cut(s)	1632
BfrI	CTTAAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	1834
BfuI	GTATCC	1 cut(s)	1545
BisI	GCNGC	8 cut(s)	52, 293, 984, 1881, 2223, 2226, 2487, 2496
BlsI	GCNGC	8 cut(s)	53, 294, 985, 1882, 2224, 2227, 2488, 2497
Bme1390I	CCNGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
Bme18I	GGWCC	1 cut(s)	1774
BmgT120I	GGNCC	2 cut(s)	1774, 2363
BmiI	GGNNCC	4 cut(s)	760, 972, 1930, 2365
BmrFI	CCNGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
BmrI	ACTGGG	1 cut(s)	2160
BmsI	GCATC	4 cut(s)	202, 645, 862, 1990
BmuI	ACTGGG	1 cut(s)	2160
BpiI	GAAGAC	5 cut(s)	357, 1028, 1445, 1962, 2349
BplI	GAGNNNNNCTC	4 cut(s)	2022, 2054, 2540, 2572
Bpu10I	CCTNAGC	2 cut(s)	2262, 2392
BpuEI	CTTGAG	1 cut(s)	2135
Bsa29I	ATCGAT	1 cut(s)	433
BsaBI	GATNNNNATC	3 cut(s)	546, 757, 2244
BsaJI	CCNNGG	6 cut(s)	762, 1666, 1777, 1837, 1838, 2127
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	1902, 1932
Bsc4I	CCNNNNNNNGG	6 cut(s)	265, 1238, 1541, 1838, 1843, 2150
Bse1I	ACTGG	3 cut(s)	1415, 2155, 2365
Bse8I	GATNNNNATC	3 cut(s)	546, 757, 2244
BseBI	CCWGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
BseCI	ATCGAT	1 cut(s)	433
BseDI	CCNNGG	6 cut(s)	762, 1666, 1777, 1837, 1838, 2127
BseGI	GGATG	4 cut(s)	871, 1186, 1213, 1401
BseJI	GATNNNNATC	3 cut(s)	546, 757, 2244
BseLI	CCNNNNNNNGG	6 cut(s)	265, 1238, 1541, 1838, 1843, 2150
BseMII	CTCAG	5 cut(s)	402, 1561, 2276, 2321, 2406
BseNI	ACTGG	3 cut(s)	1415, 2155, 2365
BseRI	GAGGAG	1 cut(s)	980
BseSI	GKGCMC	2 cut(s)	124, 303
BseXI	GCAGC	8 cut(s)	63, 304, 970, 1867, 2209, 2237, 2473, 2507
BseYI	CCCAGC	2 cut(s)	485, 860
BsgI	GTGCAG	3 cut(s)	1212, 1311, 2457
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	914, 956, 2364
BshVI	ATCGAT	1 cut(s)	433
BsiHKAI	GWGCWC	3 cut(s)	124, 583, 738
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	4 cut(s)	1517, 1820, 2146, 2441
BslI	CCNNNNNNNGG	6 cut(s)	265, 1238, 1541, 1838, 1843, 2150
BsmAI	GTCTC	2 cut(s)	409, 2150
BsmFI	GGGAC	4 cut(s)	1517, 1820, 2146, 2441
BsnI	GGCC	3 cut(s)	914, 956, 2364
Bsp1286I	GDGCHC	4 cut(s)	124, 303, 583, 738
Bsp1407I	TGTACA	2 cut(s)	359, 1372
Bsp19I	CCATGG	1 cut(s)	2127
BspACI	CCGC	4 cut(s)	114, 2108, 2546, 2560
BspANI	GGCC	3 cut(s)	914, 956, 2364
BspCNI	CTCAG	5 cut(s)	403, 1560, 2275, 2320, 2405
BspDI	ATCGAT	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	1702
BspLI	GGNNCC	4 cut(s)	760, 972, 1930, 2365
BspMAI	CTGCAG	4 cut(s)	988, 2227, 2319, 2497
BspMI	ACCTGC	1 cut(s)	1834
BspPI	GGATC	4 cut(s)	753, 766, 1931, 2234
BspQI	GCTCTTC	1 cut(s)	726
BspTI	CTTAAG	1 cut(s)	287
BsrGI	TGTACA	2 cut(s)	359, 1372
BsrI	ACTGG	3 cut(s)	1415, 2155, 2365
BssECI	CCNNGG	6 cut(s)	762, 1666, 1777, 1837, 1838, 2127
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	762, 2127
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
Bst4CI	ACNGT	4 cut(s)	359, 523, 995, 1933
Bst6I	CTCTTC	5 cut(s)	457, 726, 957, 1097, 2023
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	2 cut(s)	307, 1610
BstAUI	TGTACA	2 cut(s)	359, 1372
BstC8I	GCNNGC	5 cut(s)	56, 161, 1429, 1722, 1755
BstDEI	CTNAG	9 cut(s)	18, 411, 666, 1547, 2262, 2307, 2351, 2392, 2439
BstDSI	CCRYGG	1 cut(s)	2127
BstENI	CCTNNNNNAGG	2 cut(s)	1539, 1836
BstF5I	GGATG	4 cut(s)	871, 1186, 1213, 1401
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	1632
BstHHI	GCGC	2 cut(s)	159, 1631
BstMAI	GTCTC	2 cut(s)	409, 2150
BstMWI	GCNNNNNNNGC	8 cut(s)	298, 307, 1226, 1610, 2032, 2361, 2492, 2495
BstNI	CCWGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	8 cut(s)	455, 726, 1624, 1666, 1776, 1837, 1870, 2425
BstSFI	CTRYAG	5 cut(s)	984, 1002, 2223, 2315, 2493
BstSLI	GKGCMC	2 cut(s)	124, 303
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	8 cut(s)	63, 304, 970, 1867, 2209, 2237, 2473, 2507
BstV2I	GAAGAC	5 cut(s)	357, 1028, 1445, 1962, 2349
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
Bsu15I	ATCGAT	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	1545
BsuRI	GGCC	3 cut(s)	914, 956, 2364
BsuTUI	ATCGAT	1 cut(s)	433
BtgI	CCRYGG	1 cut(s)	2127
BtsCI	GGATG	4 cut(s)	871, 1186, 1213, 1401
BtsI	GCAGTG	2 cut(s)	993, 2312
BtsIMutI	CAGTG	4 cut(s)	528, 993, 2148, 2312
BveI	ACCTGC	1 cut(s)	1834
Cac8I	GCNNGC	5 cut(s)	56, 161, 1429, 1722, 1755
CaiI	CAGNNNCTG	2 cut(s)	103, 2314
CciI	TCATGA	1 cut(s)	1702
CfoI	GCGC	2 cut(s)	159, 1631
Cfr13I	GGNCC	2 cut(s)	1774, 2363
ClaI	ATCGAT	1 cut(s)	433
CsiI	ACCWGGT	1 cut(s)	1870
Csp6I	GTAC	5 cut(s)	360, 1373, 1467, 1562, 1868
CviAII	CATG	9 cut(s)	148, 173, 334, 554, 1432, 1654, 1703, 1736, 2128
CviQI	GTAC	5 cut(s)	360, 1373, 1467, 1562, 1868
DdeI	CTNAG	9 cut(s)	18, 411, 666, 1547, 2262, 2307, 2351, 2392, 2439
DraI	TTTAAA	2 cut(s)	909, 2253
DraIII	CACNNNGTG	1 cut(s)	307
Eam1104I	CTCTTC	5 cut(s)	457, 726, 957, 1097, 2023
EarI	CTCTTC	5 cut(s)	457, 726, 957, 1097, 2023
Ecl136II	GAGCTC	2 cut(s)	581, 736
Eco130I	CCWWGG	2 cut(s)	762, 2127
Eco147I	AGGCCT	1 cut(s)	914
Eco24I	GRGCYC	2 cut(s)	583, 738
Eco32I	GATATC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	1774
Eco53kI	GAGCTC	2 cut(s)	581, 736
Eco57I	CTGAAG	3 cut(s)	1218, 1694, 1884
EcoICRI	GAGCTC	2 cut(s)	581, 736
EcoNI	CCTNNNNNAGG	2 cut(s)	1539, 1836
EcoO109I	RGGNCCY	1 cut(s)	1774
EcoRII	CCWGG	8 cut(s)	455, 726, 1624, 1666, 1776, 1837, 1870, 2425
EcoRV	GATATC	1 cut(s)	129
EcoT14I	CCWWGG	2 cut(s)	762, 2127
EcoT38I	GRGCYC	2 cut(s)	583, 738
ErhI	CCWWGG	2 cut(s)	762, 2127
FaeI	CATG	9 cut(s)	151, 176, 337, 557, 1435, 1657, 1706, 1739, 2131
FalI	AAGNNNNNCTT	4 cut(s)	1128, 1160, 1548, 1580
FaqI	GGGAC	4 cut(s)	1517, 1820, 2146, 2441
FatI	CATG	9 cut(s)	147, 172, 333, 553, 1431, 1653, 1702, 1735, 2127
FauI	CCCGC	1 cut(s)	2567
FauNDI	CATATG	1 cut(s)	1444
FbaI	TGATCA	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	997
Fnu4HI	GCNGC	8 cut(s)	52, 293, 984, 1881, 2223, 2226, 2487, 2496
FokI	GGATG	4 cut(s)	878, 1193, 1220, 1408
FriOI	GRGCYC	2 cut(s)	583, 738
Fsp4HI	GCNGC	8 cut(s)	52, 293, 984, 1881, 2223, 2226, 2487, 2496
FspBI	CTAG	4 cut(s)	185, 480, 576, 2288
FspI	TGCGCA	1 cut(s)	158
GlaI	GCGC	2 cut(s)	158, 1630
GluI	GCNGC	8 cut(s)	52, 293, 984, 1881, 2223, 2226, 2487, 2496
GsaI	CCCAGC	2 cut(s)	489, 864
HaeII	RGCGCY	1 cut(s)	1632
HaeIII	GGCC	3 cut(s)	914, 956, 2364
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	159, 1631
Hin1II	CATG	9 cut(s)	151, 176, 337, 557, 1435, 1657, 1706, 1739, 2131
Hin6I	GCGC	2 cut(s)	157, 1629
HinP1I	GCGC	2 cut(s)	157, 1629
HindIII	AAGCTT	1 cut(s)	1458
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	292, 619, 2457
Hpy166II	GTNNAC	4 cut(s)	122, 854, 991, 998
Hpy188I	TCNGA	8 cut(s)	84, 99, 1171, 1359, 1525, 1572, 1599, 2209
Hpy188III	TCNNGA	9 cut(s)	249, 851, 1239, 1549, 1703, 1787, 1802, 1964, 2243
Hpy8I	GTNNAC	4 cut(s)	122, 854, 991, 998
Hpy99I	CGWCG	1 cut(s)	114
HpyCH4III	ACNGT	4 cut(s)	359, 523, 995, 1933
HpyCH4IV	ACGT	3 cut(s)	1560, 1905, 1976
HpyF10VI	GCNNNNNNNGC	8 cut(s)	298, 307, 1226, 1610, 2032, 2361, 2492, 2495
HpyF3I	CTNAG	9 cut(s)	18, 411, 666, 1547, 2262, 2307, 2351, 2392, 2439
HpySE526I	ACGT	3 cut(s)	1560, 1905, 1976
Hsp92II	CATG	9 cut(s)	151, 176, 337, 557, 1435, 1657, 1706, 1739, 2131
HspAI	GCGC	2 cut(s)	157, 1629
Ksp22I	TGATCA	1 cut(s)	525
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	5 cut(s)	407, 685, 1636, 2110, 2494
Lsp1109I	GCAGC	8 cut(s)	63, 304, 970, 1867, 2209, 2237, 2473, 2507
LweI	GCATC	4 cut(s)	202, 645, 862, 1990
MabI	ACCWGGT	1 cut(s)	1870
MaeI	CTAG	4 cut(s)	185, 480, 576, 2288
MaeII	ACGT	3 cut(s)	1560, 1905, 1976
MaeIII	GTNAC	6 cut(s)	89, 1201, 1661, 1874, 2231, 2310
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	4 cut(s)	124, 303, 583, 738
MlyI	GAGTC	8 cut(s)	79, 100, 201, 1502, 1539, 1976, 2444, 2549
MmeI	TCCRAC	3 cut(s)	318, 679, 861
MroXI	GAANNNNTTC	1 cut(s)	1246
MslI	CAYNNNNRTG	2 cut(s)	819, 1740
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
MvaI	CCWGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	8 cut(s)	298, 307, 1226, 1610, 2032, 2361, 2492, 2495
NcoI	CCATGG	1 cut(s)	2127
NdeI	CATATG	1 cut(s)	1444
NlaIII	CATG	9 cut(s)	151, 176, 337, 557, 1435, 1657, 1706, 1739, 2131
NlaIV	GGNNCC	4 cut(s)	760, 972, 1930, 2365
NmuCI	GTSAC	3 cut(s)	1201, 2231, 2310
NsbI	TGCGCA	1 cut(s)	158
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	1 cut(s)	1702
PasI	CCCWGGG	1 cut(s)	1838
PceI	AGGCCT	1 cut(s)	914
PciI	ACATGT	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	1246
PfeI	GAWTC	8 cut(s)	221, 242, 547, 824, 1591, 1783, 1810, 2462
PflMI	CCANNNNNTGG	2 cut(s)	265, 2150
PkrI	GCNGC	8 cut(s)	53, 294, 985, 1882, 2224, 2227, 2488, 2497
PleI	GAGTC	8 cut(s)	79, 100, 200, 1502, 1539, 1975, 2443, 2549
PpsI	GAGTC	8 cut(s)	79, 100, 200, 1502, 1539, 1975, 2443, 2549
PpuMI	RGGWCCY	1 cut(s)	1774
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	2271
Psp124BI	GAGCTC	2 cut(s)	583, 738
Psp5II	RGGWCCY	1 cut(s)	1774
Psp6I	CCWGG	8 cut(s)	455, 726, 1624, 1666, 1776, 1837, 1870, 2425
PspFI	CCCAGC	2 cut(s)	485, 860
PspGI	CCWGG	8 cut(s)	455, 726, 1624, 1666, 1776, 1837, 1870, 2425
PspN4I	GGNNCC	4 cut(s)	760, 972, 1930, 2365
PspPI	GGNCC	2 cut(s)	1774, 2363
PspPPI	RGGWCCY	1 cut(s)	1774
PsrI	GAACNNNNNNTAC	2 cut(s)	18, 50
PstI	CTGCAG	4 cut(s)	988, 2227, 2319, 2497
PstNI	CAGNNNCTG	2 cut(s)	103, 2314
PsuI	RGATCY	1 cut(s)	758
RsaI	GTAC	5 cut(s)	361, 1374, 1468, 1563, 1869
RsaNI	GTAC	5 cut(s)	360, 1373, 1467, 1562, 1868
RseI	CAYNNNNRTG	2 cut(s)	819, 1740
SacI	GAGCTC	2 cut(s)	583, 738
SapI	GCTCTTC	1 cut(s)	726
SatI	GCNGC	8 cut(s)	52, 293, 984, 1881, 2223, 2226, 2487, 2496
Sau96I	GGNCC	2 cut(s)	1774, 2363
SchI	GAGTC	8 cut(s)	79, 100, 201, 1502, 1539, 1976, 2444, 2549
ScrFI	CCNGG	8 cut(s)	457, 728, 1626, 1668, 1778, 1839, 1872, 2427
SduI	GDGCHC	4 cut(s)	124, 303, 583, 738
SexAI	ACCWGGT	1 cut(s)	1870
SfaNI	GCATC	4 cut(s)	202, 645, 862, 1990
SfcI	CTRYAG	5 cut(s)	984, 1002, 2223, 2315, 2493
SinI	GGWCC	1 cut(s)	1774
SmiMI	CAYNNNNRTG	2 cut(s)	819, 1740
SmlI	CTYRAG	2 cut(s)	287, 2114
SmoI	CTYRAG	2 cut(s)	287, 2114
SpeI	ACTAGT	1 cut(s)	2287
SseBI	AGGCCT	1 cut(s)	914
SsiI	CCGC	4 cut(s)	114, 2108, 2546, 2560
SspI	AATATT	3 cut(s)	68, 1688, 1713
SspMI	CTAG	4 cut(s)	185, 480, 576, 2288
SstI	GAGCTC	2 cut(s)	583, 738
StuI	AGGCCT	1 cut(s)	914
StyD4I	CCNGG	8 cut(s)	455, 726, 1624, 1666, 1776, 1837, 1870, 2425
StyI	CCWWGG	2 cut(s)	762, 2127
TaaI	ACNGT	4 cut(s)	359, 523, 995, 1933
TaiI	ACGT	3 cut(s)	1563, 1908, 1979
TaqI	TCGA	4 cut(s)	195, 433, 586, 738
TatI	WGTACW	2 cut(s)	359, 1372
TfiI	GAWTC	8 cut(s)	221, 242, 547, 824, 1591, 1783, 1810, 2462
TscAI	CASTG	4 cut(s)	528, 993, 2155, 2319
TseFI	GTSAC	3 cut(s)	1201, 2231, 2310
TseI	GCWGC	8 cut(s)	51, 292, 983, 1880, 2222, 2225, 2486, 2495
Tsp45I	GTSAC	3 cut(s)	1201, 2231, 2310
TspGWI	ACGGA	2 cut(s)	1220, 1649
TspRI	CASTG	4 cut(s)	528, 993, 2155, 2319
Van91I	CCANNNNNTGG	2 cut(s)	265, 2150
Vha464I	CTTAAG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	1774
XagI	CCTNNNNNAGG	2 cut(s)	1539, 1836
XapI	RAATTY	8 cut(s)	810, 928, 1027, 1079, 1377, 1825, 2015, 2214
XceI	RCATGY	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	997
XmnI	GAANNNNTTC	1 cut(s)	1246
XspI	CTAG	4 cut(s)	185, 480, 576, 2288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.