CHD3-type chromatin-remodeling factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900 |
| fragaria_vesca | FvH4_2g40920 |
| malus_domestica | MD08G1058800.v1.1 MD15G1037700.v1.1 |
| prunus_persica | Prupe.1G391600_v2.0.a1 |
| pyrus_communis | pycom08g04860 pycom08g04870 pycom15g03490 |
| rosa_chinensis | RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661 |
| rosa_laevigata | RLG00000011399 RLG00000025364 |
| rosa_multiflora | Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00424300 Rroxscaffold_7G00168470 |
| rosa_rugosa | Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400 |
| rosa_samantha | Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500 |
| rosa_wichuraiana | Rw2G021110 Rw3G005270 Rw6G035200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3380, 3861 |
| Acc16I | TGCGCA | 1 cut(s) | 1727 |
| Acc36I | ACCTGC | 2 cut(s) | 4199, 4288 |
| Acc65I | GGTACC | 1 cut(s) | 3476 |
| AccB1I | GGYRCC | 3 cut(s) | 1063, 1534, 3476 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3395 |
| AccI | GTMKAC | 2 cut(s) | 2566, 3028 |
| AccII | CGCG | 1 cut(s) | 27 |
| AciI | CCGC | 3 cut(s) | 2922, 3191, 4091 |
| AclWI | GGATC | 4 cut(s) | 1217, 2335, 3824, 4057 |
| AcoI | YGGCCR | 2 cut(s) | 3981, 4245 |
| AcuI | CTGAAG | 4 cut(s) | 509, 1382, 3072, 3819 |
| AcvI | CACGTG | 1 cut(s) | 916 |
| AfaI | GTAC | 6 cut(s) | 1637, 1930, 2931, 3120, 3285, 3478 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 260, 340, 3098, 3395, 4162, 4229 |
| AflII | CTTAAG | 1 cut(s) | 1856 |
| AflIII | ACRYGT | 2 cut(s) | 1606, 1655 |
| AhlI | ACTAGT | 1 cut(s) | 1364 |
| AjiI | CACGTC | 1 cut(s) | 485 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 978, 1010 |
| Alw21I | GWGCWC | 3 cut(s) | 1419, 1693, 2152 |
| Alw26I | GTCTC | 4 cut(s) | 1319, 1978, 2613, 3570 |
| Alw44I | GTGCAC | 1 cut(s) | 1689 |
| AlwI | GGATC | 4 cut(s) | 1217, 2335, 3824, 4057 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2525, 3395 |
| Ama87I | CYCGRG | 1 cut(s) | 2199 |
| AoxI | GGCC | 7 cut(s) | 44, 78, 594, 2481, 3981, 4231, 4245 |
| ApaLI | GTGCAC | 1 cut(s) | 1689 |
| ApeKI | GCWGC | 7 cut(s) | 2396, 2552, 3151, 3524, 3812, 4082, 4115 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1206, 1238 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 455, 467, 506, 2803, 3903 |
| Asp718I | GGTACC | 1 cut(s) | 3476 |
| AspLEI | GCGC | 2 cut(s) | 333, 1728 |
| AspS9I | GGNCC | 4 cut(s) | 900, 998, 3449, 4231 |
| AsuC2I | CCSGG | 2 cut(s) | 1447, 4047 |
| AsuHPI | GGTGA | 7 cut(s) | 359, 1861, 2756, 2792, 3677, 3845, 4079 |
| AvaI | CYCGRG | 1 cut(s) | 2199 |
| AvaII | GGWCC | 3 cut(s) | 900, 998, 3449 |
| AxyI | CCTNAGG | 1 cut(s) | 3335 |
| BaeGI | GKGCMC | 2 cut(s) | 1066, 1693 |
| BanI | GGYRCC | 3 cut(s) | 1063, 1534, 3476 |
| BanII | GRGCYC | 6 cut(s) | 374, 1419, 2152, 2856, 3105, 3990 |
| BbrPI | CACGTG | 1 cut(s) | 916 |
| BbsI | GAAGAC | 4 cut(s) | 497, 1926, 3005, 3595 |
| Bbv12I | GWGCWC | 3 cut(s) | 1419, 1693, 2152 |
| BbvCI | CCTCAGC | 1 cut(s) | 111 |
| BbvI | GCAGC | 7 cut(s) | 2383, 2539, 3163, 3511, 3824, 4069, 4102 |
| BceAI | ACGGC | 3 cut(s) | 1532, 2540, 2664 |
| BclI | TGATCA | 4 cut(s) | 1245, 2094, 3766, 4060 |
| BcnI | CCSGG | 2 cut(s) | 1447, 4047 |
| BcoDI | GTCTC | 4 cut(s) | 1319, 1978, 2613, 3570 |
| BcuI | ACTAGT | 1 cut(s) | 1364 |
| BfmI | CTRYAG | 4 cut(s) | 598, 2526, 4116, 4206 |
| BfrI | CTTAAG | 1 cut(s) | 1856 |
| BfuAI | ACCTGC | 2 cut(s) | 4199, 4288 |
| BglII | AGATCT | 2 cut(s) | 248, 312 |
| BisI | GCNGC | 8 cut(s) | 2397, 2553, 2922, 3152, 3525, 3813, 4083, 4116 |
| BlsI | GCNGC | 8 cut(s) | 2398, 2554, 2923, 3153, 3526, 3814, 4084, 4117 |
| BmcAI | AGTACT | 1 cut(s) | 1637 |
| Bme18I | GGWCC | 3 cut(s) | 900, 998, 3449 |
| BmeT110I | CYCGRG | 1 cut(s) | 2199 |
| BmgBI | CACGTC | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 4 cut(s) | 900, 998, 3449, 4231 |
| BmiI | GGNNCC | 9 cut(s) | 444, 1017, 1065, 1536, 2541, 3478, 3514, 3684, 3922 |
| BmrI | ACTGGG | 2 cut(s) | 189, 2611 |
| BmuI | ACTGGG | 2 cut(s) | 189, 2611 |
| BpiI | GAAGAC | 4 cut(s) | 497, 1926, 3005, 3595 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 238, 270, 837, 869, 3606, 3638 |
| BpmI | CTGGAG | 2 cut(s) | 289, 864 |
| Bpu10I | CCTNAGC | 3 cut(s) | 111, 2062, 4293 |
| BpuMI | CCSGG | 2 cut(s) | 1447, 4047 |
| Bsa29I | ATCGAT | 2 cut(s) | 2002, 3838 |
| BsaAI | YACGTR | 3 cut(s) | 916, 1607, 1658 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1494, 2115, 3834 |
| BsaJI | CCNNGG | 8 cut(s) | 101, 259, 2556, 3223, 3394, 3507, 3508, 3711 |
| BsaWI | WCCGGW | 1 cut(s) | 3479 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1375, 1405, 3486, 3516 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 260, 340, 3098, 3395, 4162, 4229 |
| Bse1I | ACTGG | 8 cut(s) | 47, 184, 272, 1390, 2606, 2972, 3389, 3516 |
| Bse21I | CCTNAGG | 1 cut(s) | 3335 |
| Bse3DI | GCAATG | 2 cut(s) | 430, 4039 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1494, 2115, 3834 |
| BseCI | ATCGAT | 2 cut(s) | 2002, 3838 |
| BseDI | CCNNGG | 8 cut(s) | 101, 259, 2556, 3223, 3394, 3507, 3508, 3711 |
| BseJI | GATNNNNATC | 3 cut(s) | 1494, 2115, 3834 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 260, 340, 3098, 3395, 4162, 4229 |
| BseMI | GCAATG | 2 cut(s) | 430, 4039 |
| BseMII | CTCAG | 9 cut(s) | 102, 531, 1971, 2297, 3118, 3326, 3551, 4238, 4284 |
| BseNI | ACTGG | 8 cut(s) | 47, 184, 272, 1390, 2606, 2972, 3389, 3516 |
| BseRI | GAGGAG | 4 cut(s) | 243, 1383, 1517, 2549 |
| BseSI | GKGCMC | 2 cut(s) | 1066, 1693 |
| BseXI | GCAGC | 7 cut(s) | 2383, 2539, 3163, 3511, 3824, 4069, 4102 |
| BseYI | CCCAGC | 3 cut(s) | 367, 2054, 2429 |
| BsgI | GTGCAG | 1 cut(s) | 2868 |
| Bsh1236I | CGCG | 1 cut(s) | 27 |
| BshFI | GGCC | 7 cut(s) | 46, 80, 596, 2483, 3983, 4233, 4247 |
| BshNI | GGYRCC | 3 cut(s) | 1063, 1534, 3476 |
| BshVI | ATCGAT | 2 cut(s) | 2002, 3838 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1419, 1693, 2152 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2199 |
| BsiSI | CCGG | 6 cut(s) | 698, 1446, 3480, 4047, 4234, 4248 |
| BslFI | GGGAC | 4 cut(s) | 118, 429, 951, 3377 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 260, 340, 3098, 3395, 4162, 4229 |
| BsmAI | GTCTC | 4 cut(s) | 1319, 1978, 2613, 3570 |
| BsmBI | CGTCTC | 1 cut(s) | 1319 |
| BsmFI | GGGAC | 4 cut(s) | 118, 429, 951, 3377 |
| BsmI | GAATGC | 2 cut(s) | 662, 765 |
| BsnI | GGCC | 7 cut(s) | 46, 80, 596, 2483, 3983, 4233, 4247 |
| BsoBI | CYCGRG | 1 cut(s) | 2199 |
| Bsp1286I | GDGCHC | 8 cut(s) | 374, 1066, 1419, 1693, 2152, 2856, 3105, 3990 |
| Bsp1407I | TGTACA | 1 cut(s) | 2929 |
| BspACI | CCGC | 3 cut(s) | 2922, 3191, 4091 |
| BspANI | GGCC | 7 cut(s) | 46, 80, 596, 2483, 3983, 4233, 4247 |
| BspCNI | CTCAG | 9 cut(s) | 103, 532, 1972, 2296, 3117, 3327, 3550, 4237, 4285 |
| BspDI | ATCGAT | 2 cut(s) | 2002, 3838 |
| BspFNI | CGCG | 1 cut(s) | 27 |
| BspHI | TCATGA | 1 cut(s) | 1569 |
| BspLI | GGNNCC | 9 cut(s) | 444, 1017, 1065, 1536, 2541, 3478, 3514, 3684, 3922 |
| BspMAI | CTGCAG | 3 cut(s) | 602, 4120, 4210 |
| BspMI | ACCTGC | 2 cut(s) | 4199, 4288 |
| BspPI | GGATC | 4 cut(s) | 1217, 2335, 3824, 4057 |
| BspQI | GCTCTTC | 2 cut(s) | 755, 3687 |
| BspT107I | GGYRCC | 3 cut(s) | 1063, 1534, 3476 |
| BspTI | CTTAAG | 1 cut(s) | 1856 |
| BsrDI | GCAATG | 2 cut(s) | 430, 4039 |
| BsrGI | TGTACA | 1 cut(s) | 2929 |
| BsrI | ACTGG | 8 cut(s) | 47, 184, 272, 1390, 2606, 2972, 3389, 3516 |
| BssECI | CCNNGG | 8 cut(s) | 101, 259, 2556, 3223, 3394, 3507, 3508, 3711 |
| BssT1I | CCWWGG | 1 cut(s) | 3711 |
| BstAFI | CTTAAG | 1 cut(s) | 1856 |
| BstAUI | TGTACA | 1 cut(s) | 2929 |
| BstBAI | YACGTR | 3 cut(s) | 916, 1607, 1658 |
| BstC8I | GCNNGC | 6 cut(s) | 598, 1730, 3279, 3312, 3875, 4080 |
| BstDSI | CCRYGG | 1 cut(s) | 2556 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3096 |
| BstFNI | CGCG | 1 cut(s) | 27 |
| BstHHI | GCGC | 2 cut(s) | 333, 1728 |
| BstMAI | GTCTC | 4 cut(s) | 1319, 1978, 2613, 3570 |
| BstNSI | RCATGY | 4 cut(s) | 207, 1906, 3583, 4082 |
| BstSFI | CTRYAG | 4 cut(s) | 598, 2526, 4116, 4206 |
| BstSLI | GKGCMC | 2 cut(s) | 1066, 1693 |
| BstUI | CGCG | 1 cut(s) | 27 |
| BstV1I | GCAGC | 7 cut(s) | 2383, 2539, 3163, 3511, 3824, 4069, 4102 |
| BstV2I | GAAGAC | 4 cut(s) | 497, 1926, 3005, 3595 |
| BstX2I | RGATCY | 2 cut(s) | 248, 312 |
| BstYI | RGATCY | 2 cut(s) | 248, 312 |
| Bsu15I | ATCGAT | 2 cut(s) | 2002, 3838 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3335 |
| BsuRI | GGCC | 7 cut(s) | 46, 80, 596, 2483, 3983, 4233, 4247 |
| BsuTUI | ATCGAT | 2 cut(s) | 2002, 3838 |
| BtgI | CCRYGG | 1 cut(s) | 2556 |
| BtgZI | GCGATG | 1 cut(s) | 156 |
| BtrI | CACGTC | 1 cut(s) | 485 |
| BtsIMutI | CAGTG | 4 cut(s) | 2097, 2113, 3523, 3709 |
| BveI | ACCTGC | 2 cut(s) | 4199, 4288 |
| Cac8I | GCNNGC | 6 cut(s) | 598, 1730, 3279, 3312, 3875, 4080 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2525, 3395 |
| CciI | TCATGA | 1 cut(s) | 1569 |
| CfoI | GCGC | 2 cut(s) | 333, 1728 |
| Cfr13I | GGNCC | 4 cut(s) | 900, 998, 3449, 4231 |
| ClaI | ATCGAT | 2 cut(s) | 2002, 3838 |
| Csp6I | GTAC | 6 cut(s) | 1636, 1929, 2930, 3119, 3284, 3477 |
| CviQI | GTAC | 6 cut(s) | 1636, 1929, 2930, 3119, 3284, 3477 |
| DraI | TTTAAA | 1 cut(s) | 2478 |
| EaeI | YGGCCR | 2 cut(s) | 3981, 4245 |
| EciI | GGCGGA | 1 cut(s) | 4106 |
| Ecl136II | GAGCTC | 2 cut(s) | 1417, 2150 |
| Eco130I | CCWWGG | 1 cut(s) | 3711 |
| Eco147I | AGGCCT | 1 cut(s) | 2483 |
| Eco24I | GRGCYC | 6 cut(s) | 374, 1419, 2152, 2856, 3105, 3990 |
| Eco32I | GATATC | 2 cut(s) | 1492, 1698 |
| Eco47I | GGWCC | 3 cut(s) | 900, 998, 3449 |
| Eco53kI | GAGCTC | 2 cut(s) | 1417, 2150 |
| Eco57I | CTGAAG | 4 cut(s) | 509, 1382, 3072, 3819 |
| Eco72I | CACGTG | 1 cut(s) | 916 |
| Eco81I | CCTNAGG | 1 cut(s) | 3335 |
| Eco88I | CYCGRG | 1 cut(s) | 2199 |
| EcoICRI | GAGCTC | 2 cut(s) | 1417, 2150 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3096 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3449 |
| EcoRI | GAATTC | 4 cut(s) | 154, 588, 720, 1469 |
| EcoRV | GATATC | 2 cut(s) | 1492, 1698 |
| EcoT14I | CCWWGG | 1 cut(s) | 3711 |
| EcoT38I | GRGCYC | 6 cut(s) | 374, 1419, 2152, 2856, 3105, 3990 |
| ErhI | CCWWGG | 1 cut(s) | 3711 |
| Esp3I | CGTCTC | 1 cut(s) | 1319 |
| FaqI | GGGAC | 4 cut(s) | 118, 429, 951, 3377 |
| FauNDI | CATATG | 2 cut(s) | 649, 1237 |
| FbaI | TGATCA | 4 cut(s) | 1245, 2094, 3766, 4060 |
| FblI | GTMKAC | 2 cut(s) | 2566, 3028 |
| Fnu4HI | GCNGC | 8 cut(s) | 2397, 2553, 2922, 3152, 3525, 3813, 4083, 4116 |
| FokI | GGATG | 9 cut(s) | 465, 557, 843, 1728, 2233, 2447, 2762, 3194, 3723 |
| FriOI | GRGCYC | 6 cut(s) | 374, 1419, 2152, 2856, 3105, 3990 |
| Fsp4HI | GCNGC | 8 cut(s) | 2397, 2553, 2922, 3152, 3525, 3813, 4083, 4116 |
| FspI | TGCGCA | 1 cut(s) | 1727 |
| GlaI | GCGC | 2 cut(s) | 332, 1727 |
| GluI | GCNGC | 8 cut(s) | 2397, 2553, 2922, 3152, 3525, 3813, 4083, 4116 |
| GsaI | CCCAGC | 3 cut(s) | 371, 2058, 2433 |
| GsuI | CTGGAG | 2 cut(s) | 289, 864 |
| HaeIII | GGCC | 7 cut(s) | 46, 80, 596, 2483, 3983, 4233, 4247 |
| HapII | CCGG | 6 cut(s) | 698, 1446, 3480, 4047, 4234, 4248 |
| HhaI | GCGC | 2 cut(s) | 333, 1728 |
| Hin6I | GCGC | 2 cut(s) | 331, 1726 |
| HinP1I | GCGC | 2 cut(s) | 331, 1726 |
| HincII | GTYRAC | 1 cut(s) | 4099 |
| HindII | GTYRAC | 1 cut(s) | 4099 |
| HindIII | AAGCTT | 3 cut(s) | 465, 1730, 3875 |
| HpaII | CCGG | 6 cut(s) | 698, 1446, 3480, 4047, 4234, 4248 |
| HphI | GGTGA | 7 cut(s) | 359, 1861, 2756, 2792, 3677, 3845, 4079 |
| Hpy99I | CGWCG | 2 cut(s) | 1683, 2459 |
| HspAI | GCGC | 2 cut(s) | 331, 1726 |
| KpnI | GGTACC | 1 cut(s) | 3480 |
| Ksp22I | TGATCA | 4 cut(s) | 1245, 2094, 3766, 4060 |
| LguI | GCTCTTC | 2 cut(s) | 755, 3687 |
| LmnI | GCTCC | 7 cut(s) | 138, 1021, 1504, 1861, 1976, 3494, 4207 |
| Lsp1109I | GCAGC | 7 cut(s) | 2383, 2539, 3163, 3511, 3824, 4069, 4102 |
| MaeIII | GTNAC | 7 cut(s) | 88, 1658, 2194, 3715, 3821, 4067, 4190 |
| MfeI | CAATTG | 1 cut(s) | 1829 |
| MflI | RGATCY | 2 cut(s) | 248, 312 |
| MhlI | GDGCHC | 8 cut(s) | 374, 1066, 1419, 1693, 2152, 2856, 3105, 3990 |
| MlyI | GAGTC | 5 cut(s) | 411, 683, 933, 1250, 3059 |
| MmeI | TCCRAC | 4 cut(s) | 657, 1815, 2248, 2430 |
| MroXI | GAANNNNTTC | 5 cut(s) | 455, 467, 506, 2803, 3903 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2388, 3297, 3465 |
| MspA1I | CMGCKG | 3 cut(s) | 110, 3815, 4058 |
| MspCI | CTTAAG | 1 cut(s) | 1856 |
| MspI | CCGG | 6 cut(s) | 698, 1446, 3480, 4047, 4234, 4248 |
| MunI | CAATTG | 1 cut(s) | 1829 |
| Mva1269I | GAATGC | 2 cut(s) | 662, 765 |
| MvnI | CGCG | 1 cut(s) | 27 |
| NciI | CCSGG | 2 cut(s) | 1447, 4047 |
| NdeI | CATATG | 2 cut(s) | 649, 1237 |
| NlaIV | GGNNCC | 9 cut(s) | 444, 1017, 1065, 1536, 2541, 3478, 3514, 3684, 3922 |
| NmeAIII | GCCGAG | 1 cut(s) | 4009 |
| NmuCI | GTSAC | 3 cut(s) | 3821, 4067, 4190 |
| NsbI | TGCGCA | 1 cut(s) | 1727 |
| NspI | RCATGY | 4 cut(s) | 207, 1906, 3583, 4082 |
| PaeI | GCATGC | 1 cut(s) | 4082 |
| PagI | TCATGA | 1 cut(s) | 1569 |
| PasI | CCCWGGG | 1 cut(s) | 3508 |
| PceI | AGGCCT | 1 cut(s) | 2483 |
| PciSI | GCTCTTC | 2 cut(s) | 755, 3687 |
| PctI | GAATGC | 2 cut(s) | 662, 765 |
| PdmI | GAANNNNTTC | 5 cut(s) | 455, 467, 506, 2803, 3903 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3395 |
| PfoI | TCCNGGA | 2 cut(s) | 1473, 4045 |
| PkrI | GCNGC | 8 cut(s) | 2398, 2554, 2923, 3153, 3526, 3814, 4084, 4117 |
| PleI | GAGTC | 5 cut(s) | 411, 682, 933, 1250, 3059 |
| PmaCI | CACGTG | 1 cut(s) | 916 |
| PmlI | CACGTG | 1 cut(s) | 916 |
| PpsI | GAGTC | 5 cut(s) | 411, 682, 933, 1250, 3059 |
| Ppu21I | YACGTR | 3 cut(s) | 916, 1607, 1658 |
| PpuMI | RGGWCCY | 1 cut(s) | 3449 |
| PsiI | TTATAA | 2 cut(s) | 3380, 3861 |
| Psp124BI | GAGCTC | 2 cut(s) | 1419, 2152 |
| Psp5II | RGGWCCY | 1 cut(s) | 3449 |
| PspCI | CACGTG | 1 cut(s) | 916 |
| PspFI | CCCAGC | 3 cut(s) | 367, 2054, 2429 |
| PspN4I | GGNNCC | 9 cut(s) | 444, 1017, 1065, 1536, 2541, 3478, 3514, 3684, 3922 |
| PspPI | GGNCC | 4 cut(s) | 900, 998, 3449, 4231 |
| PspPPI | RGGWCCY | 1 cut(s) | 3449 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1587, 1619 |
| PstI | CTGCAG | 3 cut(s) | 602, 4120, 4210 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2525, 3395 |
| PsuI | RGATCY | 2 cut(s) | 248, 312 |
| PvuII | CAGCTG | 3 cut(s) | 110, 3815, 4058 |
| RsaI | GTAC | 6 cut(s) | 1637, 1930, 2931, 3120, 3285, 3478 |
| RsaNI | GTAC | 6 cut(s) | 1636, 1929, 2930, 3119, 3284, 3477 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2388, 3297, 3465 |
| SacI | GAGCTC | 2 cut(s) | 1419, 2152 |
| SapI | GCTCTTC | 2 cut(s) | 755, 3687 |
| SatI | GCNGC | 8 cut(s) | 2397, 2553, 2922, 3152, 3525, 3813, 4083, 4116 |
| Sau96I | GGNCC | 4 cut(s) | 900, 998, 3449, 4231 |
| SbfI | CCTGCAGG | 2 cut(s) | 602, 4210 |
| ScaI | AGTACT | 1 cut(s) | 1637 |
| SchI | GAGTC | 5 cut(s) | 411, 683, 933, 1250, 3059 |
| SdaI | CCTGCAGG | 2 cut(s) | 602, 4210 |
| SduI | GDGCHC | 8 cut(s) | 374, 1066, 1419, 1693, 2152, 2856, 3105, 3990 |
| SfcI | CTRYAG | 4 cut(s) | 598, 2526, 4116, 4206 |
| SinI | GGWCC | 3 cut(s) | 900, 998, 3449 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2388, 3297, 3465 |
| SmlI | CTYRAG | 1 cut(s) | 1856 |
| SmoI | CTYRAG | 1 cut(s) | 1856 |
| SpeI | ACTAGT | 1 cut(s) | 1364 |
| SphI | GCATGC | 1 cut(s) | 4082 |
| Sse8387I | CCTGCAGG | 2 cut(s) | 602, 4210 |
| SseBI | AGGCCT | 1 cut(s) | 2483 |
| SsiI | CCGC | 3 cut(s) | 2922, 3191, 4091 |
| SstI | GAGCTC | 2 cut(s) | 1419, 2152 |
| StuI | AGGCCT | 1 cut(s) | 2483 |
| StyI | CCWWGG | 1 cut(s) | 3711 |
| TaqI | TCGA | 7 cut(s) | 562, 586, 1681, 2002, 2155, 2330, 3838 |
| TaqII | GACCGA | 2 cut(s) | 54, 3077 |
| TatI | WGTACW | 5 cut(s) | 1635, 1928, 2929, 3118, 3283 |
| TauI | GCSGC | 1 cut(s) | 2924 |
| TscAI | CASTG | 4 cut(s) | 2097, 2113, 3523, 3709 |
| TseFI | GTSAC | 3 cut(s) | 3821, 4067, 4190 |
| TseI | GCWGC | 7 cut(s) | 2396, 2552, 3151, 3524, 3812, 4082, 4115 |
| Tsp45I | GTSAC | 3 cut(s) | 3821, 4067, 4190 |
| TspGWI | ACGGA | 2 cut(s) | 1969, 2233 |
| TspRI | CASTG | 4 cut(s) | 2097, 2113, 3523, 3709 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3395 |
| Vha464I | CTTAAG | 1 cut(s) | 1856 |
| VneI | GTGCAC | 1 cut(s) | 1689 |
| VpaK11BI | GGWCC | 3 cut(s) | 900, 998, 3449 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3096 |
| XbaI | TCTAGA | 1 cut(s) | 1462 |
| XceI | RCATGY | 4 cut(s) | 207, 1906, 3583, 4082 |
| XmiI | GTMKAC | 2 cut(s) | 2566, 3028 |
| XmnI | GAANNNNTTC | 5 cut(s) | 455, 467, 506, 2803, 3903 |
| ZrmI | AGTACT | 1 cut(s) | 1637 |