CHD3-type chromatin-remodeling factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900 |
| fragaria_vesca | FvH4_2g40920 |
| malus_domestica | MD08G1058800.v1.1 MD15G1037700.v1.1 |
| prunus_persica | Prupe.1G391600_v2.0.a1 |
| pyrus_communis | pycom08g04860 pycom08g04870 pycom15g03490 |
| rosa_chinensis | RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661 |
| rosa_laevigata | RLG00000011399 RLG00000025364 |
| rosa_multiflora | Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00424300 Rroxscaffold_7G00168470 |
| rosa_rugosa | Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400 |
| rosa_samantha | Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500 |
| rosa_wichuraiana | Rw2G021110 Rw3G005270 Rw6G035200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 205 |
| AfaI | GTAC | 1 cut(s) | 74 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 1 cut(s) | 4 |
| AjnI | CCWGG | 2 cut(s) | 135, 177 |
| AspLEI | GCGC | 1 cut(s) | 142 |
| BccI | CCATC | 2 cut(s) | 31, 211 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BciT130I | CCWGG | 2 cut(s) | 137, 179 |
| BciVI | GTATCC | 1 cut(s) | 56 |
| BfoI | RGCGCY | 1 cut(s) | 143 |
| BfuI | GTATCC | 1 cut(s) | 56 |
| Bme1390I | CCNGG | 2 cut(s) | 137, 179 |
| BmrFI | CCNGG | 2 cut(s) | 137, 179 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseBI | CCWGG | 2 cut(s) | 137, 179 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 28 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmFI | GGGAC | 1 cut(s) | 28 |
| BspCNI | CTCAG | 1 cut(s) | 71 |
| BspHI | TCATGA | 1 cut(s) | 213 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 2 cut(s) | 137, 179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 121 |
| BstC8I | GCNNGC | 1 cut(s) | 233 |
| BstDEI | CTNAG | 1 cut(s) | 58 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 50 |
| BstH2I | RGCGCY | 1 cut(s) | 143 |
| BstHHI | GCGC | 1 cut(s) | 142 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 121 |
| BstNI | CCWGG | 2 cut(s) | 137, 179 |
| BstSCI | CCNGG | 2 cut(s) | 135, 177 |
| BsuI | GTATCC | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 1 cut(s) | 233 |
| CciI | TCATGA | 1 cut(s) | 213 |
| CfoI | GCGC | 1 cut(s) | 142 |
| Csp6I | GTAC | 1 cut(s) | 73 |
| CviAII | CATG | 2 cut(s) | 165, 214 |
| CviQI | GTAC | 1 cut(s) | 73 |
| DdeI | CTNAG | 1 cut(s) | 58 |
| Eco57I | CTGAAG | 1 cut(s) | 205 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 50 |
| EcoRII | CCWGG | 2 cut(s) | 135, 177 |
| FaeI | CATG | 2 cut(s) | 168, 217 |
| FaiI | YATR | 5 cut(s) | 94, 100, 152, 166, 215 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 59, 91 |
| FaqI | GGGAC | 1 cut(s) | 28 |
| FatI | CATG | 2 cut(s) | 164, 213 |
| GlaI | GCGC | 1 cut(s) | 141 |
| HaeII | RGCGCY | 1 cut(s) | 143 |
| HhaI | GCGC | 1 cut(s) | 142 |
| Hin1II | CATG | 2 cut(s) | 168, 217 |
| Hin6I | GCGC | 1 cut(s) | 140 |
| HinP1I | GCGC | 1 cut(s) | 140 |
| HinfI | GANTC | 3 cut(s) | 19, 56, 102 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 83, 110 |
| Hpy188III | TCNNGA | 2 cut(s) | 60, 214 |
| HpyAV | CCTTC | 3 cut(s) | 46, 180, 198 |
| HpyCH4IV | ACGT | 1 cut(s) | 71 |
| HpyCH4V | TGCA | 1 cut(s) | 124 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 121 |
| HpyF3I | CTNAG | 1 cut(s) | 58 |
| HpySE526I | ACGT | 1 cut(s) | 71 |
| Hsp92II | CATG | 2 cut(s) | 168, 217 |
| HspAI | GCGC | 1 cut(s) | 140 |
| LmnI | GCTCC | 1 cut(s) | 147 |
| LpnPI | CCDG | 5 cut(s) | 45, 122, 149, 164, 191 |
| MaeII | ACGT | 1 cut(s) | 71 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MboII | GAAGA | 1 cut(s) | 166 |
| MlyI | GAGTC | 2 cut(s) | 13, 50 |
| MseI | TTAA | 2 cut(s) | 13, 241 |
| MspR9I | CCNGG | 2 cut(s) | 137, 179 |
| MvaI | CCWGG | 2 cut(s) | 137, 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 121 |
| NlaIII | CATG | 2 cut(s) | 168, 217 |
| PagI | TCATGA | 1 cut(s) | 213 |
| PfeI | GAWTC | 1 cut(s) | 102 |
| PleI | GAGTC | 2 cut(s) | 13, 50 |
| PpsI | GAGTC | 2 cut(s) | 13, 50 |
| Psp6I | CCWGG | 2 cut(s) | 135, 177 |
| PspGI | CCWGG | 2 cut(s) | 135, 177 |
| RsaI | GTAC | 1 cut(s) | 74 |
| RsaNI | GTAC | 1 cut(s) | 73 |
| SaqAI | TTAA | 2 cut(s) | 13, 241 |
| SchI | GAGTC | 2 cut(s) | 13, 50 |
| ScrFI | CCNGG | 2 cut(s) | 137, 179 |
| SetI | ASST | 2 cut(s) | 31, 74 |
| SspI | AATATT | 2 cut(s) | 199, 224 |
| StyD4I | CCNGG | 2 cut(s) | 135, 177 |
| TaiI | ACGT | 1 cut(s) | 74 |
| TfiI | GAWTC | 1 cut(s) | 102 |
| Tru1I | TTAA | 2 cut(s) | 13, 241 |
| Tru9I | TTAA | 2 cut(s) | 13, 241 |
| TspDTI | ATGAA | 2 cut(s) | 94, 167 |
| TspGWI | ACGGA | 1 cut(s) | 160 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 50 |