Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

2624797 .. 2648107

Gene Structure 23311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1037700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4236 bp

ATGCGCAATATGAGTAGCTTGGTGGAGAGGCTTCGTGTTAGGTCAGACCGAAGACCAATTTACAATATTGATGAGTCAGATGATGAGGCTGATTTTGTGACTGGAAAACGTGGGGCAGCTCCGGAAAAGTTTGAAAAGATTATTAGGAGTGACGCGAAAGAGAATTCATGTCAAGCCTGTGGCGGAACTGGGAATCTTCTGGGCTGTGAAACATGTAGTTATGCTTACCATTCTAAGTGTTTACTTCCACCACTGAGATCACCTCCCCCTGGCAACTGGAGATGCCCTGAATGTGTAAGCCCATTAAATGATATTGATAAGATTTTGGACTGTGAAATGCGCCCTACTGTAGCTGGTGATAGTGATGCCTCAACGCTGGGCTCGAAGCAAATTTTTGTAAAACAGTATCTTGTAAAGTGGAAGGGACTATCCTATTTGCACTGCACATGGGTTCCTGAGAAGGAGTTCGTGAAAGCTTTCAAAGCCCATCCACGTTTGAAGACAAAAGTAAATAATTTCCATCGTCAAATGGAATCAAGTAATAACTCTGAGGATGATTTTGTTGCTATTCGACCTGAATGGACTACTGTTGATCGAATTCTGGCCTGCAGGGAAGATGATGAGAAAGAATATTTAGTAAAGTGGAAAGAACTTCCCTATGATGAGTGCTATTGGGAATCTGAATCTGACATAGCTGCATTTCAGCCGGAAATAGGGAGATTCAACAGAATTCAGTCTAGGTCTCATAAAGTTTTGTCTAGTAAGCAGAAGAGCAGTCTTAGAGATGCCATGGAATCAAAAAATAAGCAGAAAGAGTTTCAACAGTATGAAGGCAGTCCTGATTTTCTTTCTGGAGGCACTCTACATCCTTATCAGCTTGAAGGGTTGAACTTCTTACGTTTCTCCTGGTCCAAACAAACACATGTTATACTTGCAGATGAGATGGGACTTGGCAAAACCATACAGAGTATTGCTTTTTTAGCATCACTTTTTGAAGAGAAAGTCTCTCCACATCTAGTTGTGGCTCCACTTTCAACCTTGAGAAATTGGGAACGGGAATTTGCAACATGGGCACCTCAAATGAATGTGGTTATGTATGTTGGCTCTTCCCAAGCGCGTGCTGTCATACGGGAATATGAATTTTACTTCCCCAAAAATCACAAGAAGATGAAGAAAAAGAAATCTGGTCAAATTGTTAGCGAAAGCAAGCAAGATAGGATCAAATTTGATGTTCTCTTGACATCTTACGAGATGATCAACCTAGACTCAACATCACTGAAACCGATAAAGTGGGAGTGCATGATTGTTGATGAAGGCCATCGTCTAAAAAATAAGGATTCAAAATTATTCTCATCGTTACAGCAGTATTGTACTAATCATCGTGTGCTTCTGACCGGAACTCCCCTCCAGAACAATCTGGACGAGCTCTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTCGGAAGTTTGGAAGAGTTCCAGGAAGAGTTTAAGGATATAAATCAAGAGGAACAAATTTCTCGGCTTCACAGAATGTTGGCTCCCCATCTTCTAAGAAGAGTGAAAAAGGATGTGATGAAGGAACTACCTCCTAAAAAGGAACTGATATTACGTGTTGATTTAAGCAGCAAACAGAAAGAGTATTACAAAGCAATTCTGACCCGTAACTACCAGATACTAACTCGTCGAGGTGGTGCGCAGATATCTCTTATCAATGTGGTTATGGAATTGCGCAAGCTTTGTTGTCATCCTTTTATGTTAGAGGGAGTTGAACCAGTCATCGCAGATCCAAATGAAGCTTTCAAACAACTGTTGGAAACTTCTGGGAAATTGCAATTGTTGGACAAAATGATGGTGAAACTAAAGGAGCAAGGGCATAGGGTTCTCATATATTCACAGTTTCAGCACATGCTTGATTTGCTAGAAGACTATTGTACTTTCAAAAAATGGCAGTACGAACGGATAGATGGAAAAGTTGGTGGAGCTGAGAGACAAATAAGAATAGATCGATTTAATGCCAAAAGTTCTTCCAGATTTTGTTTTTTGCTATCTACTCGAGCTGGGGGCTTAGGAATAAACCTTGCAACTGCAGACACAGTGATCATATATGATAGTGATTGGAATCCACATGCTGATCTACAAGCTATGGCAAGAGCTCATCGACTTGGACAAACTAACAAGGTAATGATATATAGGCTAGTGACCCGAGGAAGCATTGAAGAACGGATGATGGAAATGACAAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGTTAAAGAAACAAGAGATTAACCAGGAAGAGTTAGATGACATCATAAGGTATGGATCGAAGGAGTTATTTGTTGACGAAAATGATGAAGCAGGAAAATCCCGTCAAATTCATTATGATGATGCTGCAATAGATAGACTACTGGATCGTGATCAAGCTGGGGATGATGAGGCTTTGTTGGATGATGAAGATGAAGATGGATTTTTAAAGGCCTTCAAGGTTGCAAATTTTGAATATATTGATGAAGCAGAGACTGTAGCAGAGGAAGAACCACAAAAGGCTGCCATGGACAGTCGACCTATTGCGAGCAGTTCTGAAAGAACAAATTACTGGGAAGAGTTACTAAAAGACAAATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTGGGAAAAGGAAAGCGAAGTCGTAAGCAGATGGTATCTGTTGATGATGACGATCTTGCTGGTTTGGAAGATGTGAGTTCTGACGGTGAGGATGATAACTATGAAGCCGAAGTGATGGATGGTGAAACATCATCCTCCGGAACTGCTTCTGGGGGGAAGAGGCCGCCTAACAGAAAGAGAAGTCGTGTGGAAAGCACAGAGCCCCCTCCCTTGATGGAAGGAGAAGGAAGATCATTCAAAGTTTTGGGTTTCAATCAAAGTCAGAGAGCACTGTTTGTACAAATAATGATGAGGTTCGGAGTTGGGGATTATGACTGGAAAGAGTTTACAGCACGCATGAAGAAGACATTTGAAGAAATAGATAGATATGCTAAACTATTCTTGGAGCACATAGCTGAAGGAGACAATGACTCTCCAACCTTTACAGATGGTGTTCCTAAAGACGGGCTCAGAATAGGAGACGTACTTGTTAGGCTTGCCACTCTGATGCTGGTGAAGAAAAGGGTGGAAGCAGCATTAAGAAATCCAGGTGCTCCACTTTTTTCAGAGGATACCTTCTTGTTCCACCCTGGACTGAAGGGTGGAAAGTATTGGAAGGAGGAACATGATTTGACATTGTTGCGTGCCGTAATTAAGCATGGATATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGAGGCTTCAAGAAGTTATCTGTCAAGAGTTGAATCTTCCCTTTATAAATCTACCCTTCCATGGACAAGTTAATACACAAGCACAAAATGGTGAGAAAACAGCTAATGGAGAAGGACCTAACATCCATGCGAGTGAAAATGGTAGCGGAATTGATATAGGAGCTAATGTTGCCCAGGGAAACAGTCATGCCGCTAACCAACCGCTGTTGTATCAAAACACTTCTGTGTTATATCAATATAGAGATATGCAGAGAAGGCAGGTAGAATATATAAAGAAAAGAGTGCTTCTTTTGGAGAAAGGGAATGTTTCAGAGTATATTGCAGAAGAATATGGTGAAGCAACTGTGGTTGGAAGTGAAGAACTCGAGAGTGAACCCAACGCTACAATATTGCCAAGCACTCATTCTGTTGAAATTAATGGTCACATGGCTGATCAGTTGCCTAGAATAGTAGACATCACTCCTGAAGAAGTTGCTGCTGCAGCTTGTGACAACGATCCAGATCGGTTGAAATTGCCTCGCCTGTATAATGAGATGTGCAAGCTCGTGGAACGAAATGCCCATACTTCATGTTCGACTGCTTTAGGAACCATTTGTGAAGAGATAAACATGACTCTCTCTTCTGCGCCCCATAATCCTCCACCGGCATCTCACATACTGAATCTGGGTAAGCAATCGGAAGCTGAGTCAAGTAGCATTGTTCTCCCGAAACCACCATCTCCTCAAAGTGACGGAAACCATGCTGTCGTGGCGGACACTGCAGAAGCCGAAGCTACAATTATGGAGCTAGACCCTGAACCCGTGGACGGGATGATTTCTGATGATCTGGGAAAGCAAGAACAGGAGGAGGTTGATTCTAAAGGAAAGGGGGTCGTTGTCTTGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1412

Amino Acids

160.4

Weight (kDa)

5.48

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	57 - 98	2.7e-08	PHD-finger
Chromo	PF00385	118 - 159	1.4e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	196 - 242	9.9e-14	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	287 - 468	8.5e-11	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	291 - 586	1e-82	SNF2-related domain
HDA2-3	PF11496	538 - 753	2.4e-10	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	611 - 724	2.8e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	847 - 907	2.6e-25	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	943 - 1072	3.6e-48	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3392
Acc16I	TGCGCA	3 cut(s)	5, 1701, 1736
Acc36I	ACCTGC	1 cut(s)	3595
AccB1I	GGYRCC	1 cut(s)	1072
AccI	GTMKAC	2 cut(s)	2575, 3798
AccII	CGCG	2 cut(s)	155, 1117
AccIII	TCCGGA	2 cut(s)	121, 2804
AciI	CCGC	6 cut(s)	183, 2831, 3492, 3537, 3548, 4097
AclWI	GGATC	5 cut(s)	1226, 1784, 2344, 2433, 3836
AcuI	CTGAAG	3 cut(s)	3084, 3263, 3831
AfaI	GTAC	5 cut(s)	1372, 1939, 1958, 2946, 3132
AfiI	CCNNNNNNNGG	6 cut(s)	269, 713, 3110, 3407, 4151, 4152
AflIII	ACRYGT	3 cut(s)	212, 922, 1615
AjnI	CCWGG	7 cut(s)	268, 905, 1482, 2304, 3193, 3235, 3519
AjuI	GAANNNNNNNTTGG	4 cut(s)	2243, 2275, 3733, 3765
AleI	CACNNNNGTG	1 cut(s)	3569
Alw21I	GWGCWC	5 cut(s)	1428, 2161, 2938, 3057, 3202
Alw26I	GTCTC	6 cut(s)	747, 1009, 1987, 2525, 3063, 3120
AlwI	GGATC	5 cut(s)	1226, 1784, 2344, 2433, 3836
AlwNI	CAGNNNCTG	1 cut(s)	2534
Ama87I	CYCGRG	3 cut(s)	2058, 2208, 3710
Aor13HI	TCCGGA	2 cut(s)	121, 2804
AoxI	GGCC	4 cut(s)	603, 1315, 2490, 2828
ApeKI	GCWGC	9 cut(s)	116, 695, 1629, 2405, 2561, 3179, 3821, 3824, 3827
AseI	ATTAAT	1 cut(s)	3762
Asp700I	GAANNNNTTC	3 cut(s)	464, 476, 2812
AspLEI	GCGC	6 cut(s)	6, 342, 1117, 1702, 1737, 3973
AspS9I	GGNCC	3 cut(s)	909, 3343, 3461
AsuHPI	GGTGA	8 cut(s)	252, 368, 1870, 2765, 2801, 3172, 3449, 3692
AvaI	CYCGRG	3 cut(s)	2058, 2208, 3710
AvaII	GGWCC	3 cut(s)	909, 3343, 3461
AxyI	CCTNAGG	1 cut(s)	3347
BaeGI	GKGCMC	1 cut(s)	1075
BanI	GGYRCC	1 cut(s)	1072
BanII	GRGCYC	5 cut(s)	383, 1428, 2161, 2871, 3117
BauI	CACGAG	1 cut(s)	3890
BbsI	GAAGAC	4 cut(s)	58, 506, 1935, 3017
Bbv12I	GWGCWC	5 cut(s)	1428, 2161, 2938, 3057, 3202
BbvI	GCAGC	9 cut(s)	128, 682, 1641, 2392, 2548, 3191, 3808, 3811, 3839
BceAI	ACGGC	1 cut(s)	3278
BciT130I	CCWGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
BciVI	GTATCC	1 cut(s)	3211
BclI	TGATCA	4 cut(s)	1254, 2103, 2431, 3778
BcoDI	GTCTC	6 cut(s)	747, 1009, 1987, 2525, 3063, 3120
BfaI	CTAG	8 cut(s)	738, 759, 1016, 1262, 1925, 2201, 3789, 4133
BfmI	CTRYAG	6 cut(s)	348, 607, 2091, 2535, 3825, 4104
BfuAI	ACCTGC	1 cut(s)	3595
BfuI	GTATCC	1 cut(s)	3211
Bme1390I	CCNGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
Bme18I	GGWCC	3 cut(s)	909, 3343, 3461
BmeT110I	CYCGRG	3 cut(s)	2058, 2208, 3710
BmgT120I	GGNCC	3 cut(s)	909, 3343, 3461
BmiI	GGNNCC	5 cut(s)	453, 1026, 1074, 1545, 3934
BmrFI	CCNGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
BmrI	ACTGGG	2 cut(s)	198, 2620
BmsI	GCATC	8 cut(s)	272, 355, 775, 992, 1441, 2392, 3144, 4001
BmuI	ACTGGG	2 cut(s)	198, 2620
BpiI	GAAGAC	4 cut(s)	58, 506, 1935, 3017
BplI	GAGNNNNNCTC	4 cut(s)	247, 279, 989, 1021
BpmI	CTGGAG	3 cut(s)	298, 873, 1391
Bpu10I	CCTNAGC	1 cut(s)	2071
BpuEI	CTTGAG	1 cut(s)	1060
Bsa29I	ATCGAT	1 cut(s)	2011
BsaAI	YACGTR	1 cut(s)	1616
BsaBI	GATNNNNATC	5 cut(s)	1503, 2124, 2430, 2718, 3846
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	9 cut(s)	268, 789, 2209, 2565, 3235, 3406, 3519, 3520, 4146
BsaWI	WCCGGW	3 cut(s)	121, 1394, 2804
BsaXI	ACNNNNNCTCC	4 cut(s)	1384, 1414, 3498, 3528
Bsc4I	CCNNNNNNNGG	6 cut(s)	269, 713, 3110, 3407, 4151, 4152
Bse118I	RCCGGY	1 cut(s)	3988
Bse1I	ACTGG	7 cut(s)	106, 193, 281, 1778, 2427, 2615, 2987
Bse21I	CCTNAGG	1 cut(s)	3347
Bse8I	GATNNNNATC	5 cut(s)	1503, 2124, 2430, 2718, 3846
BseAI	TCCGGA	2 cut(s)	121, 2804
BseBI	CCWGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
BseCI	ATCGAT	1 cut(s)	2011
BseDI	CCNNGG	9 cut(s)	268, 789, 2209, 2565, 3235, 3406, 3519, 3520, 4146
BseJI	GATNNNNATC	5 cut(s)	1503, 2124, 2430, 2718, 3846
BseLI	CCNNNNNNNGG	6 cut(s)	269, 713, 3110, 3407, 4151, 4152
BseMII	CTCAG	7 cut(s)	245, 447, 540, 1980, 3130, 3338, 4020
BseNI	ACTGG	7 cut(s)	106, 193, 281, 1778, 2427, 2615, 2987
BseRI	GAGGAG	2 cut(s)	4056, 4205
BseSI	GKGCMC	1 cut(s)	1075
BseXI	GCAGC	9 cut(s)	128, 682, 1641, 2392, 2548, 3191, 3808, 3811, 3839
BseYI	CCCAGC	4 cut(s)	376, 1454, 2063, 2438
BsgI	GTGCAG	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	155, 1117
BshFI	GGCC	4 cut(s)	605, 1317, 2492, 2830
BshNI	GGYRCC	1 cut(s)	1072
BshVI	ATCGAT	1 cut(s)	2011
BsiHKAI	GWGCWC	5 cut(s)	1428, 2161, 2938, 3057, 3202
BsiHKCI	CYCGRG	3 cut(s)	2058, 2208, 3710
BsiSI	CCGG	5 cut(s)	122, 707, 1395, 2805, 3989
BslFI	GGGAC	2 cut(s)	438, 960
BslI	CCNNNNNNNGG	6 cut(s)	269, 713, 3110, 3407, 4151, 4152
BsmAI	GTCTC	6 cut(s)	747, 1009, 1987, 2525, 3063, 3120
BsmBI	CGTCTC	1 cut(s)	3120
BsmFI	GGGAC	2 cut(s)	438, 960
BsnI	GGCC	4 cut(s)	605, 1317, 2492, 2830
Bso31I	GGTCTC	1 cut(s)	747
BsoBI	CYCGRG	3 cut(s)	2058, 2208, 3710
Bsp1286I	GDGCHC	9 cut(s)	383, 1075, 1428, 2161, 2871, 2938, 3057, 3117, 3202
Bsp13I	TCCGGA	2 cut(s)	121, 2804
Bsp1407I	TGTACA	1 cut(s)	2944
Bsp19I	CCATGG	3 cut(s)	789, 2565, 3406
BspACI	CCGC	6 cut(s)	183, 2831, 3492, 3537, 3548, 4097
BspANI	GGCC	4 cut(s)	605, 1317, 2492, 2830
BspCNI	CTCAG	7 cut(s)	246, 448, 541, 1981, 3129, 3339, 4021
BspDI	ATCGAT	1 cut(s)	2011
BspEI	TCCGGA	2 cut(s)	121, 2804
BspFNI	CGCG	2 cut(s)	155, 1117
BspLI	GGNNCC	5 cut(s)	453, 1026, 1074, 1545, 3934
BspMAI	CTGCAG	4 cut(s)	611, 2095, 3829, 4108
BspMI	ACCTGC	1 cut(s)	3595
BspPI	GGATC	5 cut(s)	1226, 1784, 2344, 2433, 3836
BspQI	GCTCTTC	2 cut(s)	764, 1111
BspT107I	GGYRCC	1 cut(s)	1072
BspTNI	GGTCTC	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	3988
BsrGI	TGTACA	1 cut(s)	2944
BsrI	ACTGG	7 cut(s)	106, 193, 281, 1778, 2427, 2615, 2987
BssAI	RCCGGY	1 cut(s)	3988
BssECI	CCNNGG	9 cut(s)	268, 789, 2209, 2565, 3235, 3406, 3519, 3520, 4146
BssSI	CACGAG	1 cut(s)	3890
BssT1I	CCWWGG	3 cut(s)	789, 2565, 3406
Bst2BI	CACGAG	1 cut(s)	3890
Bst2UI	CCWGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
BstAUI	TGTACA	1 cut(s)	2944
BstBAI	YACGTR	1 cut(s)	1616
BstDSI	CCRYGG	4 cut(s)	789, 2565, 3406, 4146
BstFNI	CGCG	2 cut(s)	155, 1117
BstHHI	GCGC	6 cut(s)	6, 342, 1117, 1702, 1737, 3973
BstMAI	GTCTC	6 cut(s)	747, 1009, 1987, 2525, 3063, 3120
BstNI	CCWGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
BstNSI	RCATGY	4 cut(s)	216, 926, 1915, 2135
BstSCI	CCNGG	7 cut(s)	268, 905, 1482, 2304, 3193, 3235, 3519
BstSFI	CTRYAG	6 cut(s)	348, 607, 2091, 2535, 3825, 4104
BstSLI	GKGCMC	1 cut(s)	1075
BstUI	CGCG	2 cut(s)	155, 1117
BstV1I	GCAGC	9 cut(s)	128, 682, 1641, 2392, 2548, 3191, 3808, 3811, 3839
BstV2I	GAAGAC	4 cut(s)	58, 506, 1935, 3017
BstX2I	RGATCY	1 cut(s)	1789
BstYI	RGATCY	1 cut(s)	1789
Bsu15I	ATCGAT	1 cut(s)	2011
Bsu36I	CCTNAGG	1 cut(s)	3347
BsuI	GTATCC	1 cut(s)	3211
BsuRI	GGCC	4 cut(s)	605, 1317, 2492, 2830
BsuTUI	ATCGAT	1 cut(s)	2011
BtgI	CCRYGG	4 cut(s)	789, 2565, 3406, 4146
BtgZI	GCGATG	1 cut(s)	1768
BtsI	GCAGTG	2 cut(s)	439, 4101
BtsIMutI	CAGTG	6 cut(s)	251, 439, 1274, 2106, 2936, 4101
BveI	ACCTGC	1 cut(s)	3595
CaiI	CAGNNNCTG	1 cut(s)	2534
CfoI	GCGC	6 cut(s)	6, 342, 1117, 1702, 1737, 3973
Cfr10I	RCCGGY	1 cut(s)	3988
Cfr13I	GGNCC	3 cut(s)	909, 3343, 3461
ClaI	ATCGAT	1 cut(s)	2011
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	5 cut(s)	1371, 1938, 1957, 2945, 3131
CviQI	GTAC	5 cut(s)	1371, 1938, 1957, 2945, 3131
DraI	TTTAAA	1 cut(s)	2487
EciI	GGCGGA	2 cut(s)	198, 4112
Ecl136II	GAGCTC	2 cut(s)	1426, 2159
Eco130I	CCWWGG	3 cut(s)	789, 2565, 3406
Eco147I	AGGCCT	1 cut(s)	2492
Eco24I	GRGCYC	5 cut(s)	383, 1428, 2161, 2871, 3117
Eco31I	GGTCTC	1 cut(s)	747
Eco32I	GATATC	1 cut(s)	1707
Eco47I	GGWCC	3 cut(s)	909, 3343, 3461
Eco53kI	GAGCTC	2 cut(s)	1426, 2159
Eco57I	CTGAAG	3 cut(s)	3084, 3263, 3831
Eco81I	CCTNAGG	1 cut(s)	3347
Eco88I	CYCGRG	3 cut(s)	2058, 2208, 3710
EcoICRI	GAGCTC	2 cut(s)	1426, 2159
EcoO109I	RGGNCCY	2 cut(s)	3343, 3461
EcoRI	GAATTC	3 cut(s)	163, 597, 729
EcoRII	CCWGG	7 cut(s)	268, 905, 1482, 2304, 3193, 3235, 3519
EcoRV	GATATC	1 cut(s)	1707
EcoT14I	CCWWGG	3 cut(s)	789, 2565, 3406
EcoT22I	ATGCAT	1 cut(s)	1443
EcoT38I	GRGCYC	5 cut(s)	383, 1428, 2161, 2871, 3117
ErhI	CCWWGG	3 cut(s)	789, 2565, 3406
Esp3I	CGTCTC	1 cut(s)	3120
FaqI	GGGAC	2 cut(s)	438, 960
FbaI	TGATCA	4 cut(s)	1254, 2103, 2431, 3778
FblI	GTMKAC	2 cut(s)	2575, 3798
FriOI	GRGCYC	5 cut(s)	383, 1428, 2161, 2871, 3117
FspBI	CTAG	8 cut(s)	738, 759, 1016, 1262, 1925, 2201, 3789, 4133
FspI	TGCGCA	3 cut(s)	5, 1701, 1736
GlaI	GCGC	6 cut(s)	5, 341, 1116, 1701, 1736, 3972
GsaI	CCCAGC	4 cut(s)	380, 1458, 2067, 2442
GsuI	CTGGAG	3 cut(s)	298, 873, 1391
HaeIII	GGCC	4 cut(s)	605, 1317, 2492, 2830
HapII	CCGG	5 cut(s)	122, 707, 1395, 2805, 3989
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	6 cut(s)	6, 342, 1117, 1702, 1737, 3973
Hin6I	GCGC	6 cut(s)	4, 340, 1115, 1700, 1735, 3971
HinP1I	GCGC	6 cut(s)	4, 340, 1115, 1700, 1735, 3971
HincII	GTYRAC	2 cut(s)	2356, 2576
HindII	GTYRAC	2 cut(s)	2356, 2576
HindIII	AAGCTT	3 cut(s)	474, 1739, 1800
HpaII	CCGG	5 cut(s)	122, 707, 1395, 2805, 3989
HphI	GGTGA	8 cut(s)	252, 368, 1870, 2765, 2801, 3172, 3449, 3692
Hpy166II	GTNNAC	7 cut(s)	242, 2356, 2576, 2994, 3719, 3799, 4150
Hpy8I	GTNNAC	7 cut(s)	242, 2356, 2576, 2994, 3719, 3799, 4150
Hpy99I	CGWCG	1 cut(s)	1692
HpyCH4IV	ACGT	5 cut(s)	109, 493, 898, 1615, 3129
HpySE526I	ACGT	5 cut(s)	109, 493, 898, 1615, 3129
HspAI	GCGC	6 cut(s)	4, 340, 1115, 1700, 1735, 3971
Kpn2I	TCCGGA	2 cut(s)	121, 2804
Ksp22I	TGATCA	4 cut(s)	1254, 2103, 2431, 3778
LguI	GCTCTTC	2 cut(s)	764, 1111
Lsp1109I	GCAGC	9 cut(s)	128, 682, 1641, 2392, 2548, 3191, 3808, 3811, 3839
LweI	GCATC	8 cut(s)	272, 355, 775, 992, 1441, 2392, 3144, 4001
MaeI	CTAG	8 cut(s)	738, 759, 1016, 1262, 1925, 2201, 3789, 4133
MaeII	ACGT	5 cut(s)	109, 493, 898, 1615, 3129
MaeIII	GTNAC	9 cut(s)	97, 149, 1356, 1667, 2203, 2619, 3767, 3833, 4073
MfeI	CAATTG	1 cut(s)	1838
MflI	RGATCY	1 cut(s)	1789
MhlI	GDGCHC	9 cut(s)	383, 1075, 1428, 2161, 2871, 2938, 3057, 3117, 3202
MlyI	GAGTC	5 cut(s)	83, 1259, 3071, 3952, 4040
MmeI	TCCRAC	6 cut(s)	1797, 1824, 2257, 2439, 3107, 3676
Mph1103I	ATGCAT	1 cut(s)	1443
MroI	TCCGGA	2 cut(s)	121, 2804
MroXI	GAANNNNTTC	3 cut(s)	464, 476, 2812
MslI	CAYNNNNRTG	5 cut(s)	2397, 3152, 3309, 3477, 3569
MspA1I	CMGCKG	1 cut(s)	3550
MspI	CCGG	5 cut(s)	122, 707, 1395, 2805, 3989
MspR9I	CCNGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
MunI	CAATTG	1 cut(s)	1838
MvaI	CCWGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
MvnI	CGCG	2 cut(s)	155, 1117
NcoI	CCATGG	3 cut(s)	789, 2565, 3406
NlaIV	GGNNCC	5 cut(s)	453, 1026, 1074, 1545, 3934
NmeAIII	GCCGAG	1 cut(s)	1504
NmuCI	GTSAC	6 cut(s)	97, 149, 2203, 3767, 3833, 4073
NsbI	TGCGCA	3 cut(s)	5, 1701, 1736
NsiI	ATGCAT	1 cut(s)	1443
NspI	RCATGY	4 cut(s)	216, 926, 1915, 2135
OliI	CACNNNNGTG	1 cut(s)	3569
PaeR7I	CTCGAG	2 cut(s)	2058, 3710
PasI	CCCWGGG	1 cut(s)	3520
PceI	AGGCCT	1 cut(s)	2492
PciI	ACATGT	2 cut(s)	212, 922
PciSI	GCTCTTC	2 cut(s)	764, 1111
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PdmI	GAANNNNTTC	3 cut(s)	464, 476, 2812
PfoI	TCCNGGA	1 cut(s)	1482
PleI	GAGTC	5 cut(s)	82, 1259, 3071, 3952, 4039
PpsI	GAGTC	5 cut(s)	82, 1259, 3071, 3952, 4039
Ppu21I	YACGTR	1 cut(s)	1616
PpuMI	RGGWCCY	2 cut(s)	3343, 3461
PscI	ACATGT	2 cut(s)	212, 922
PshBI	ATTAAT	1 cut(s)	3762
PsiI	TTATAA	1 cut(s)	3392
Psp124BI	GAGCTC	2 cut(s)	1428, 2161
Psp5II	RGGWCCY	2 cut(s)	3343, 3461
Psp6I	CCWGG	7 cut(s)	268, 905, 1482, 2304, 3193, 3235, 3519
PspFI	CCCAGC	4 cut(s)	376, 1454, 2063, 2438
PspGI	CCWGG	7 cut(s)	268, 905, 1482, 2304, 3193, 3235, 3519
PspN4I	GGNNCC	5 cut(s)	453, 1026, 1074, 1545, 3934
PspPI	GGNCC	3 cut(s)	909, 3343, 3461
PspPPI	RGGWCCY	2 cut(s)	3343, 3461
PspXI	VCTCGAGB	1 cut(s)	2058
PsrI	GAACNNNNNNTAC	2 cut(s)	1596, 1628
PstI	CTGCAG	4 cut(s)	611, 2095, 3829, 4108
PstNI	CAGNNNCTG	1 cut(s)	2534
PsuI	RGATCY	1 cut(s)	1789
RsaI	GTAC	5 cut(s)	1372, 1939, 1958, 2946, 3132
RsaNI	GTAC	5 cut(s)	1371, 1938, 1957, 2945, 3131
RseI	CAYNNNNRTG	5 cut(s)	2397, 3152, 3309, 3477, 3569
SacI	GAGCTC	2 cut(s)	1428, 2161
SalI	GTCGAC	1 cut(s)	2574
SapI	GCTCTTC	2 cut(s)	764, 1111
Sau96I	GGNCC	3 cut(s)	909, 3343, 3461
SbfI	CCTGCAGG	1 cut(s)	611
SchI	GAGTC	5 cut(s)	83, 1259, 3071, 3952, 4040
ScrFI	CCNGG	7 cut(s)	270, 907, 1484, 2306, 3195, 3237, 3521
SdaI	CCTGCAGG	1 cut(s)	611
SduI	GDGCHC	9 cut(s)	383, 1075, 1428, 2161, 2871, 2938, 3057, 3117, 3202
SfaNI	GCATC	8 cut(s)	272, 355, 775, 992, 1441, 2392, 3144, 4001
SfcI	CTRYAG	6 cut(s)	348, 607, 2091, 2535, 3825, 4104
Sfr274I	CTCGAG	2 cut(s)	2058, 3710
SinI	GGWCC	3 cut(s)	909, 3343, 3461
SlaI	CTCGAG	2 cut(s)	2058, 3710
SmiMI	CAYNNNNRTG	5 cut(s)	2397, 3152, 3309, 3477, 3569
SmlI	CTYRAG	3 cut(s)	1039, 2058, 3710
SmoI	CTYRAG	3 cut(s)	1039, 2058, 3710
Sse8387I	CCTGCAGG	1 cut(s)	611
SseBI	AGGCCT	1 cut(s)	2492
SsiI	CCGC	6 cut(s)	183, 2831, 3492, 3537, 3548, 4097
SspI	AATATT	3 cut(s)	67, 632, 3735
SspMI	CTAG	8 cut(s)	738, 759, 1016, 1262, 1925, 2201, 3789, 4133
SstI	GAGCTC	2 cut(s)	1428, 2161
StuI	AGGCCT	1 cut(s)	2492
StyD4I	CCNGG	7 cut(s)	268, 905, 1482, 2304, 3193, 3235, 3519
StyI	CCWWGG	3 cut(s)	789, 2565, 3406
TaiI	ACGT	5 cut(s)	112, 496, 901, 1618, 3132
TaqII	GACCGA	1 cut(s)	63
TatI	WGTACW	3 cut(s)	1370, 1937, 2944
TauI	GCSGC	2 cut(s)	2833, 3539
TscAI	CASTG	6 cut(s)	258, 446, 1281, 2106, 2943, 4108
TseFI	GTSAC	6 cut(s)	97, 149, 2203, 3767, 3833, 4073
TseI	GCWGC	9 cut(s)	116, 695, 1629, 2405, 2561, 3179, 3821, 3824, 3827
Tsp45I	GTSAC	6 cut(s)	97, 149, 2203, 3767, 3833, 4073
TspGWI	ACGGA	3 cut(s)	1978, 2242, 4092
TspRI	CASTG	6 cut(s)	258, 446, 1281, 2106, 2943, 4108
VpaK11BI	GGWCC	3 cut(s)	909, 3343, 3461
VspI	ATTAAT	1 cut(s)	3762
XceI	RCATGY	4 cut(s)	216, 926, 1915, 2135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3154
XhoI	CTCGAG	2 cut(s)	2058, 3710
XmiI	GTMKAC	2 cut(s)	2575, 3798
XmnI	GAANNNNTTC	3 cut(s)	464, 476, 2812
XspI	CTAG	8 cut(s)	738, 759, 1016, 1262, 1925, 2201, 3789, 4133
Zsp2I	ATGCAT	1 cut(s)	1443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.