Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

9327119 .. 9340151

Gene Structure 13033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4086 bp

ATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGACGAGTCTGACGATGATGCTGATTTTGGGACTGGAAAACCCGGGAGAGCTCAGGAAAAGTTTGAGAAGATTGTTAGGACTGACGTGAAAGATAATTCCTGTCAAGCGTGTGGGGAAAGCGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCGTTAAAGCCTCCTCTCCCTGACAGCTGGCGATGTCCGGAATGTGTGAGCCCTCTGACTGACATCGACAAGATTCTGGATTGTGAAATGCGACCTACTGTGGCCGATGATAGTGACGCCTCAAAGCTGGGTTCAAAGCAAATTTTTGTTAAACAGTATCTTGTGAAGTGGAAGGGATTATCATATCTACATTGCACATGGATTCCTGAGAAAGAATTTTTCAAAGCGTTCAAGACGTACCCACGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGTTCTTCAAATAATAACACAGATGATGAATTTGTTGCCATTCGACCGAATGGACAACTGTTGATCGGATCCTTGCTTGCAGGTCCCGTGGTTAATGGGAAGACCTCATTGCTGTATGGGGAGTCTAGAATGTTAGTAATGCTTCTTATTGGATTCTGCAGGGGCGACGATGAGAAGCAATATCTTGTAAAGTGGAAAGAACTTCCTTATGATGAATGCTATTGGGAGGTGGAGGCTGATATCTCGACATTTCAACCAGAAATAGAGAGATTCCATAAAATACAGTCTAGATCTCAGAAATTGTCTGGTAAGCAGAAGAGTAGTCTTAAAGATGCTCTCGAACCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTCGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCCTATCAGCTTGAAGGTCTGAACTTCTTACGTTTCTCCTGGTCCAAACAAACTCATGTCATACTTGCAGACGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTCTTTGAAGAGAGAGTCTATCCACATCTAGTGGTGGCTCCACTTTCAACATTACGAAATTGGGAACGGGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTTCCAAGCCCGTGCGGTCATACGTGAATACGAATTTTACTTCCCCAAAAATCACAAGAAGATCAAGAAAAAGAAATCTGGTCAGATCAGTGGGGAGAGCAAGCAAGATAGGATCAAGTTTGATGTCCTCCTCACATCATATGAGATGATTAACTTGGACTCTACATCACTGAAACCGATAAAGTGGGAGTGTATGATTGTTGATGAAGGGCATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTACTGGAGTAATCATCGCACATTGCTGACTGGAACTCCTCTTCAGAACAATCTGGACGAACTTTTCATGCTTATGCACTTCCTCGATGCTGCCAAGTTTGCAAGTCTAGAGGAGTTCCAGGAAGAGTTTAAGGATATAAATCAAGAGGAGCAGATCTCCAGGCTTCACAAAATACTTGCTCCTCATCTTCTTAGAAGGGTGAAAAAAGATGTCATGAAAGAACTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGTAAGCAGAAGCAGAAAGAATATTACAAAGCAATTCTGACTCGTAACTATCAGATACTGAGTCGTCGTGGTGGTGCTCAGATATCTCTTATCAATGTGGTCATGGAATTGCGCAAGCTCTGTTGTCATGCTTATATGCTAGAGGGAGTCGAACCGGACATAGAAGATGCCAATGAATCTCACAAACAACTTTTGGAATCTTCTGGAAAACTGCAAGTATTGGACAAAATGCTGGTGAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAACACATGTTGGATTTGTTAGAAGACTACTGTACATACAAAAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTTAATGCCAAAAACTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGATATGAAGGAAGTATTATAGGACAGAGTTTAAGAAATATAAGTTCGGTCTGCAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACGATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGTTAAAGGCTCAAAACATCAACCAGGAAGAGCTCGATGACATCATTAGATATGGATCCAAGGAGTTATTTGCTGATGAAAATGATGAAGTAGGAAAATCCCGTCAAATTCATTATGATGATGCTGCTATAGATAGATTACTTGATCGTGAACAAGCTGGGGATGATGATGCTCTGTTGGAGGACGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGCCGTAGAAGAGGAGGAACCAGAAAAGGCTGCAGTGGACAGTAGACCTACAGAAAGCGTTTCAGAGAAGACAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTTCTGATGGAGATCTCGCTGTGGATAGTGCAGAACCCCCTCCTTTGATGGAAGGAGAAGGAAGATCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTACATTTGTACAAATTTTGATGAGGTTTGGGATGGGGGATTATGACTGGAAGGAGTTTGTAGCACGCATGAAGAAAACATATGAAGAAATAAAAGCTTATGGTACTCTATTCTTGGAACACATAGTTGAACAACCATTAACAGACTCCCCAACCTTTTCAGAAAGTATTACTGTTATAGATGGTGTCCCTAAAGAAGGACTCAGGATACAAGATGTACTCGTTCGGATTTCTGTTATGTCTATGATTCATCAGAAAGCGAAGTTTGCAACAGAAAATCCAGGCGCTCCTTTGTATGAAGATGACATCATGTTCCGTTACCCAGGACTGAAGGGTAGCAAATATTGGAAGGAGTATCATGATGGAATATTACTGCGTGCCGTATTGAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAAGAGTTGAATCTTCCTTTTATGAATCTTCCTGTCCCAGGGCAGGTTAAAGCACAAAATACTGAAGCACCTGGTAACGTTGCTGGAAATGGTAATGGAAATGACGTAGGAGAAAATGTAGTTCAGGGAACCATTGATCCAGTAAACCAACCTCAATCATATCAAGAGTCTTCTACGTTGCATCATTTTAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGAAAGGCAACAATGCAGAAGCCCAGAAAGAATACTTTGATGAATTGTATGCAAATGAGACTGCGGAGCTTGAGAAGGAAACCATGGGGACAAATCTGCCATACACTGGGGAGACTGATAAGCAAATGGGCGATCAGTTGCCAAGAGTTGAAGAAATCGGTTCGGAAGAAATTTTAGCTGCAGCTTGTGACAATGATCCAGATCGTTTAAAATTGCCTCAGCTTTATAATGAGGACTCGCCCCCGGTGCAACAAAATCCTCCTACCTCAGCACAGCCAACACTAAATGCAGATAGACAACCAGGAGATGAGTCAAAGAGCAATCTTGTAGTCCCTGAATCACCCTCTGCACAAGATAATGCTGCTCCTGCAGCCGAAGTTCAAATGGGAGATTTGGCAACAGAACCCAAGCCCGAAATTGTGGAGTTAGACTCCCGCAACACAGCAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1361

Amino Acids

155.89

Weight (kDa)

5.49

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	54 - 95	1.4e-07	PHD-finger
Chromo	PF00385	115 - 155	2.2e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	226 - 266	8.8e-12	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	309 - 490	1.5e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	313 - 611	1.7e-77	SNF2-related domain
Helicase_C	PF00271	635 - 766	2.5e-20	Helicase conserved C-terminal domain
DUF1087	PF06465	889 - 946	2.5e-22	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	951 - 1078	1.5e-48	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	54, 3858
Acc16I	TGCGCA	2 cut(s)	26, 1808
Acc36I	ACCTGC	2 cut(s)	590, 3421
AccB1I	GGYRCC	1 cut(s)	1138
AccB7I	CCANNNNNTGG	1 cut(s)	3737
AccI	GTMKAC	1 cut(s)	2701
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	3 cut(s)	1187, 3695, 4066
AclI	AACGTT	1 cut(s)	3465
AclWI	GGATC	7 cut(s)	582, 595, 1292, 2457, 2470, 3518, 3821
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	3 cut(s)	1457, 3281, 3471
AcyI	GRCGYC	1 cut(s)	357
AdeI	CACNNNGTG	1 cut(s)	1957
AfaI	GTAC	7 cut(s)	479, 925, 1433, 2011, 2943, 3037, 3150
AfiI	CCNNNNNNNGG	4 cut(s)	3128, 3425, 3430, 3737
AflII	CTTAAG	1 cut(s)	1937
AflIII	ACRYGT	1 cut(s)	1983
AjiI	CACGTC	2 cut(s)	145, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	2369, 2401
AloI	GAACNNNNNNTCC	2 cut(s)	3508, 3540
Alw21I	GWGCWC	4 cut(s)	112, 1774, 2287, 2442
Alw26I	GTCTC	5 cut(s)	194, 1394, 2059, 3683, 3737
AlwI	GGATC	7 cut(s)	582, 595, 1292, 2457, 2470, 3518, 3821
AlwNI	CAGNNNCTG	1 cut(s)	1753
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	3 cut(s)	342, 2616, 2658
ApeKI	GCWGC	9 cut(s)	22, 1520, 1942, 2531, 2687, 3809, 3812, 3992, 4001
AspLEI	GCGC	3 cut(s)	27, 1809, 3218
AspS9I	GGNCC	3 cut(s)	602, 975, 3361
AsuC2I	CCSGG	3 cut(s)	102, 103, 3875
AsuHPI	GGTGA	4 cut(s)	1642, 1942, 2323, 3963
AsuII	TTCGAA	1 cut(s)	894
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	3 cut(s)	602, 975, 3361
BaeGI	GKGCMC	2 cut(s)	1141, 1953
BamHI	GGATCC	2 cut(s)	587, 2462
BanI	GGYRCC	1 cut(s)	1138
BanII	GRGCYC	4 cut(s)	112, 293, 2287, 2442
BauI	CACGAG	1 cut(s)	2334
BbsI	GAAGAC	4 cut(s)	626, 2007, 2732, 3549
Bbv12I	GWGCWC	4 cut(s)	112, 1774, 2287, 2442
BbvCI	CCTCAGC	2 cut(s)	3849, 3898
BbvI	GCAGC	9 cut(s)	9, 1507, 1954, 2518, 2674, 3796, 3824, 3979, 4013
BceAI	ACGGC	2 cut(s)	2645, 3296
BciVI	GTATCC	1 cut(s)	3132
BclI	TGATCA	1 cut(s)	2175
BcnI	CCSGG	3 cut(s)	102, 103, 3875
BcoDI	GTCTC	5 cut(s)	194, 1394, 2059, 3683, 3737
BfaI	CTAG	8 cut(s)	30, 645, 807, 1082, 1538, 1835, 2130, 2280
BfmI	CTRYAG	7 cut(s)	676, 2239, 2535, 2688, 2706, 3810, 3999
BfoI	RGCGCY	1 cut(s)	3219
BfrI	CTTAAG	1 cut(s)	1937
BfuAI	ACCTGC	2 cut(s)	590, 3421
BfuI	GTATCC	1 cut(s)	3132
BglII	AGATCT	3 cut(s)	809, 1584, 2842
BisI	GCNGC	9 cut(s)	23, 1521, 1943, 2532, 2688, 3810, 3813, 3993, 4002
BlsI	GCNGC	9 cut(s)	24, 1522, 1944, 2533, 2689, 3811, 3814, 3994, 4003
BmcAI	AGTACT	1 cut(s)	1433
Bme18I	GGWCC	3 cut(s)	602, 975, 3361
BmeT110I	CYCGRG	1 cut(s)	101
BmgBI	CACGTC	2 cut(s)	145, 485
BmgT120I	GGNCC	3 cut(s)	602, 975, 3361
BmiI	GGNNCC	7 cut(s)	589, 604, 1092, 1140, 2464, 2676, 3517
BmrI	ACTGGG	1 cut(s)	3747
BmuI	ACTGGG	1 cut(s)	3747
BpiI	GAAGAC	4 cut(s)	626, 2007, 2732, 3549
BplI	GAGNNNNNCTC	6 cut(s)	1571, 1603, 3609, 3641, 4046, 4078
BpmI	CTGGAG	3 cut(s)	939, 1456, 1573
Bpu10I	CCTNAGC	3 cut(s)	111, 3849, 3898
Bpu14I	TTCGAA	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	3722
BpuMI	CCSGG	3 cut(s)	102, 103, 3875
Bsa29I	ATCGAT	1 cut(s)	2083
BsaAI	YACGTR	1 cut(s)	1196
BsaBI	GATNNNNATC	5 cut(s)	1569, 2250, 2461, 2841, 3831
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	9 cut(s)	101, 606, 2466, 3253, 3364, 3424, 3425, 3714, 3873
BsaWI	WCCGGW	2 cut(s)	277, 1849
BsaXI	ACNNNNNCTCC	4 cut(s)	1450, 1480, 3489, 3519
Bsc4I	CCNNNNNNNGG	4 cut(s)	3128, 3425, 3430, 3737
Bse1I	ACTGG	6 cut(s)	97, 1439, 1465, 2984, 3527, 3742
Bse3DI	GCAATG	3 cut(s)	430, 626, 1451
Bse8I	GATNNNNATC	5 cut(s)	1569, 2250, 2461, 2841, 3831
BseAI	TCCGGA	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	2083
BseDI	CCNNGG	9 cut(s)	101, 606, 2466, 3253, 3364, 3424, 3425, 3714, 3873
BseGI	GGATG	3 cut(s)	931, 2575, 2970
BseJI	GATNNNNATC	5 cut(s)	1569, 2250, 2461, 2841, 3831
BseLI	CCNNNNNNNGG	4 cut(s)	3128, 3425, 3430, 3737
BseMI	GCAATG	3 cut(s)	430, 626, 1451
BseMII	CTCAG	9 cut(s)	125, 438, 827, 1745, 1787, 2052, 3148, 3863, 3912
BseNI	ACTGG	6 cut(s)	97, 1439, 1465, 2984, 3527, 3742
BseRI	GAGGAG	7 cut(s)	243, 1292, 1458, 1556, 1592, 1602, 2684
BseSI	GKGCMC	2 cut(s)	1141, 1953
BseXI	GCAGC	9 cut(s)	9, 1507, 1954, 2518, 2674, 3796, 3824, 3979, 4013
BseYI	CCCAGC	3 cut(s)	367, 2135, 2564
BsgI	GTGCAG	2 cut(s)	2880, 3963
Bsh1285I	CGRYCG	1 cut(s)	566
BshFI	GGCC	3 cut(s)	344, 2618, 2660
BshNI	GGYRCC	1 cut(s)	1138
BshVI	ATCGAT	1 cut(s)	2083
BsiEI	CGRYCG	1 cut(s)	566
BsiHKAI	GWGCWC	4 cut(s)	112, 1774, 2287, 2442
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	102, 278, 1850, 3875
BslFI	GGGAC	7 cut(s)	103, 588, 1026, 3104, 3407, 3733, 3947
BslI	CCNNNNNNNGG	4 cut(s)	3128, 3425, 3430, 3737
BsmAI	GTCTC	5 cut(s)	194, 1394, 2059, 3683, 3737
BsmBI	CGTCTC	1 cut(s)	1394
BsmFI	GGGAC	7 cut(s)	103, 588, 1026, 3104, 3407, 3733, 3947
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	344, 2618, 2660
BsoBI	CYCGRG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	894
Bsp1286I	GDGCHC	7 cut(s)	112, 293, 1141, 1774, 1953, 2287, 2442
Bsp13I	TCCGGA	1 cut(s)	277
Bsp1407I	TGTACA	2 cut(s)	2009, 2941
Bsp19I	CCATGG	1 cut(s)	3714
BspACI	CCGC	3 cut(s)	1187, 3695, 4066
BspANI	GGCC	3 cut(s)	344, 2618, 2660
BspCNI	CTCAG	9 cut(s)	124, 439, 826, 1746, 1786, 2053, 3147, 3862, 3911
BspDI	ATCGAT	1 cut(s)	2083
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	2 cut(s)	1644, 3289
BspLI	GGNNCC	7 cut(s)	589, 604, 1092, 1140, 2464, 2676, 3517
BspMAI	CTGCAG	5 cut(s)	680, 2243, 2692, 3814, 4003
BspMI	ACCTGC	2 cut(s)	590, 3421
BspPI	GGATC	7 cut(s)	582, 595, 1292, 2457, 2470, 3518, 3821
BspQI	GCTCTTC	1 cut(s)	2430
BspT104I	TTCGAA	1 cut(s)	894
BspT107I	GGYRCC	1 cut(s)	1138
BspTI	CTTAAG	1 cut(s)	1937
BsrDI	GCAATG	3 cut(s)	430, 626, 1451
BsrGI	TGTACA	2 cut(s)	2009, 2941
BsrI	ACTGG	6 cut(s)	97, 1439, 1465, 2984, 3527, 3742
BssECI	CCNNGG	9 cut(s)	101, 606, 2466, 3253, 3364, 3424, 3425, 3714, 3873
BssNI	GRCGYC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	2334
BssT1I	CCWWGG	2 cut(s)	2466, 3714
Bst2BI	CACGAG	1 cut(s)	2334
Bst6I	CTCTTC	9 cut(s)	830, 1056, 1476, 1548, 2107, 2430, 2661, 2801, 3610
BstACI	GRCGYC	1 cut(s)	357
BstAFI	CTTAAG	1 cut(s)	1937
BstAPI	GCANNNNNTGC	2 cut(s)	221, 1957
BstAUI	TGTACA	2 cut(s)	2009, 2941
BstBAI	YACGTR	1 cut(s)	1196
BstBI	TTCGAA	1 cut(s)	894
BstC8I	GCNNGC	7 cut(s)	269, 597, 1274, 1811, 2998, 3309, 3342
BstDSI	CCRYGG	2 cut(s)	606, 3714
BstENI	CCTNNNNNAGG	2 cut(s)	3126, 3423
BstF5I	GGATG	3 cut(s)	931, 2575, 2970
BstH2I	RGCGCY	1 cut(s)	3219
BstHHI	GCGC	3 cut(s)	27, 1809, 3218
BstMAI	GTCTC	5 cut(s)	194, 1394, 2059, 3683, 3737
BstMCI	CGRYCG	1 cut(s)	566
BstNSI	RCATGY	2 cut(s)	207, 1987
BstSFI	CTRYAG	7 cut(s)	676, 2239, 2535, 2688, 2706, 3810, 3999
BstSLI	GKGCMC	2 cut(s)	1141, 1953
BstV1I	GCAGC	9 cut(s)	9, 1507, 1954, 2518, 2674, 3796, 3824, 3979, 4013
BstV2I	GAAGAC	4 cut(s)	626, 2007, 2732, 3549
BstX2I	RGATCY	5 cut(s)	587, 809, 1584, 2462, 2842
BstYI	RGATCY	5 cut(s)	587, 809, 1584, 2462, 2842
Bsu15I	ATCGAT	1 cut(s)	2083
BsuI	GTATCC	1 cut(s)	3132
BsuRI	GGCC	3 cut(s)	344, 2618, 2660
BsuTUI	ATCGAT	1 cut(s)	2083
BtgI	CCRYGG	2 cut(s)	606, 3714
BtgZI	GCGATG	2 cut(s)	286, 1430
BtrI	CACGTC	2 cut(s)	145, 485
BtsCI	GGATG	3 cut(s)	931, 2575, 2970
BtsI	GCAGTG	3 cut(s)	926, 2248, 2697
BtsIMutI	CAGTG	7 cut(s)	926, 1267, 1340, 2178, 2248, 2697, 3735
BveI	ACCTGC	2 cut(s)	590, 3421
Cac8I	GCNNGC	7 cut(s)	269, 597, 1274, 1811, 2998, 3309, 3342
CaiI	CAGNNNCTG	1 cut(s)	1753
CciI	TCATGA	2 cut(s)	1644, 3289
CfoI	GCGC	3 cut(s)	27, 1809, 3218
Cfr13I	GGNCC	3 cut(s)	602, 975, 3361
Cfr9I	CCCGGG	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	2083
CseI	GACGC	1 cut(s)	365
CsiI	ACCWGGT	1 cut(s)	3457
Csp6I	GTAC	7 cut(s)	478, 924, 1432, 2010, 2942, 3036, 3149
CviQI	GTAC	7 cut(s)	478, 924, 1432, 2010, 2942, 3036, 3149
DraI	TTTAAA	2 cut(s)	2613, 3840
DraIII	CACNNNGTG	1 cut(s)	1957
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	9 cut(s)	830, 1056, 1476, 1548, 2107, 2430, 2661, 2801, 3610
EarI	CTCTTC	9 cut(s)	830, 1056, 1476, 1548, 2107, 2430, 2661, 2801, 3610
Ecl136II	GAGCTC	3 cut(s)	110, 2285, 2440
Eco130I	CCWWGG	2 cut(s)	2466, 3714
Eco147I	AGGCCT	1 cut(s)	2618
Eco24I	GRGCYC	4 cut(s)	112, 293, 2287, 2442
Eco32I	GATATC	2 cut(s)	760, 1779
Eco47I	GGWCC	3 cut(s)	602, 975, 3361
Eco53kI	GAGCTC	3 cut(s)	110, 2285, 2440
Eco57I	CTGAAG	3 cut(s)	1457, 3281, 3471
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	3 cut(s)	110, 2285, 2440
EcoNI	CCTNNNNNAGG	2 cut(s)	3126, 3423
EcoO109I	RGGNCCY	2 cut(s)	602, 3361
EcoRV	GATATC	2 cut(s)	760, 1779
EcoT14I	CCWWGG	2 cut(s)	2466, 3714
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	4 cut(s)	112, 293, 2287, 2442
ErhI	CCWWGG	2 cut(s)	2466, 3714
Esp3I	CGTCTC	1 cut(s)	1394
FaqI	GGGAC	7 cut(s)	103, 588, 1026, 3104, 3407, 3733, 3947
FauI	CCCGC	1 cut(s)	4073
FauNDI	CATATG	2 cut(s)	1312, 3013
FbaI	TGATCA	1 cut(s)	2175
FblI	GTMKAC	1 cut(s)	2701
Fnu4HI	GCNGC	9 cut(s)	23, 1521, 1943, 2532, 2688, 3810, 3813, 3993, 4002
FokI	GGATG	3 cut(s)	918, 2582, 2977
FriOI	GRGCYC	4 cut(s)	112, 293, 2287, 2442
Fsp4HI	GCNGC	9 cut(s)	23, 1521, 1943, 2532, 2688, 3810, 3813, 3993, 4002
FspBI	CTAG	8 cut(s)	30, 645, 807, 1082, 1538, 1835, 2130, 2280
FspI	TGCGCA	2 cut(s)	26, 1808
GlaI	GCGC	3 cut(s)	26, 1808, 3217
GluI	GCNGC	9 cut(s)	23, 1521, 1943, 2532, 2688, 3810, 3813, 3993, 4002
GsaI	CCCAGC	3 cut(s)	371, 2139, 2568
GsuI	CTGGAG	3 cut(s)	939, 1456, 1573
HaeII	RGCGCY	1 cut(s)	3219
HaeIII	GGCC	3 cut(s)	344, 2618, 2660
HapII	CCGG	4 cut(s)	102, 278, 1850, 3875
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	3 cut(s)	27, 1809, 3218
Hin1I	GRCGYC	1 cut(s)	357
Hin6I	GCGC	3 cut(s)	25, 1807, 3216
HinP1I	GCGC	3 cut(s)	25, 1807, 3216
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	3027
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	4 cut(s)	102, 278, 1850, 3875
HphI	GGTGA	4 cut(s)	1642, 1942, 2323, 3963
Hpy166II	GTNNAC	7 cut(s)	233, 502, 926, 2558, 2695, 2702, 3532
Hpy8I	GTNNAC	7 cut(s)	233, 502, 926, 2558, 2695, 2702, 3532
Hpy99I	CGWCG	2 cut(s)	689, 1764
HpyCH4IV	ACGT	8 cut(s)	144, 476, 484, 964, 1195, 3465, 3492, 3563
HpySE526I	ACGT	8 cut(s)	144, 476, 484, 964, 1195, 3465, 3492, 3563
Hsp92I	GRCGYC	1 cut(s)	357
HspAI	GCGC	3 cut(s)	25, 1807, 3216
Kpn2I	TCCGGA	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	2175
KspAI	GTTAAC	1 cut(s)	502
LguI	GCTCTTC	1 cut(s)	2430
LmnI	GCTCC	8 cut(s)	1096, 1579, 1615, 2057, 2389, 3223, 3697, 4000
Lsp1109I	GCAGC	9 cut(s)	9, 1507, 1954, 2518, 2674, 3796, 3824, 3979, 4013
MabI	ACCWGGT	1 cut(s)	3457
MaeI	CTAG	8 cut(s)	30, 645, 807, 1082, 1538, 1835, 2130, 2280
MaeII	ACGT	8 cut(s)	144, 476, 484, 964, 1195, 3465, 3492, 3563
MaeIII	GTNAC	5 cut(s)	353, 1739, 3248, 3461, 3818
MflI	RGATCY	5 cut(s)	587, 809, 1584, 2462, 2842
MhlI	GDGCHC	7 cut(s)	112, 293, 1141, 1774, 1953, 2287, 2442
MmeI	TCCRAC	3 cut(s)	1968, 2383, 2565
Mph1103I	ATGCAT	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	277
MslI	CAYNNNNRTG	3 cut(s)	1502, 2523, 3327
MspA1I	CMGCKG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	1937
MspI	CCGG	4 cut(s)	102, 278, 1850, 3875
Mva1269I	GAATGC	1 cut(s)	740
NciI	CCSGG	3 cut(s)	102, 103, 3875
NcoI	CCATGG	1 cut(s)	3714
NdeI	CATATG	2 cut(s)	1312, 3013
NlaIV	GGNNCC	7 cut(s)	589, 604, 1092, 1140, 2464, 2676, 3517
NmuCI	GTSAC	2 cut(s)	353, 3818
NsbI	TGCGCA	2 cut(s)	26, 1808
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	207, 1987
NspV	TTCGAA	1 cut(s)	894
PagI	TCATGA	2 cut(s)	1644, 3289
PasI	CCCWGGG	1 cut(s)	3425
PceI	AGGCCT	1 cut(s)	2618
PciI	ACATGT	1 cut(s)	1983
PciSI	GCTCTTC	1 cut(s)	2430
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	740
PflMI	CCANNNNNTGG	1 cut(s)	3737
PfoI	TCCNGGA	1 cut(s)	1548
PkrI	GCNGC	9 cut(s)	24, 1522, 1944, 2533, 2689, 3811, 3814, 3994, 4003
Ppu21I	YACGTR	1 cut(s)	1196
PpuMI	RGGWCCY	2 cut(s)	602, 3361
PscI	ACATGT	1 cut(s)	1983
PsiI	TTATAA	2 cut(s)	54, 3858
Psp124BI	GAGCTC	3 cut(s)	112, 2287, 2442
Psp1406I	AACGTT	1 cut(s)	3465
Psp5II	RGGWCCY	2 cut(s)	602, 3361
PspFI	CCCAGC	3 cut(s)	367, 2135, 2564
PspN4I	GGNNCC	7 cut(s)	589, 604, 1092, 1140, 2464, 2676, 3517
PspPI	GGNCC	3 cut(s)	602, 975, 3361
PspPPI	RGGWCCY	2 cut(s)	602, 3361
PsrI	GAACNNNNNNTAC	2 cut(s)	1662, 1694
PstI	CTGCAG	5 cut(s)	680, 2243, 2692, 3814, 4003
PstNI	CAGNNNCTG	1 cut(s)	1753
PsuI	RGATCY	5 cut(s)	587, 809, 1584, 2462, 2842
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	7 cut(s)	479, 925, 1433, 2011, 2943, 3037, 3150
RsaNI	GTAC	7 cut(s)	478, 924, 1432, 2010, 2942, 3036, 3149
RseI	CAYNNNNRTG	3 cut(s)	1502, 2523, 3327
SacI	GAGCTC	3 cut(s)	112, 2287, 2442
SapI	GCTCTTC	1 cut(s)	2430
SatI	GCNGC	9 cut(s)	23, 1521, 1943, 2532, 2688, 3810, 3813, 3993, 4002
Sau96I	GGNCC	3 cut(s)	602, 975, 3361
ScaI	AGTACT	1 cut(s)	1433
SduI	GDGCHC	7 cut(s)	112, 293, 1141, 1774, 1953, 2287, 2442
SexAI	ACCWGGT	1 cut(s)	3457
SfcI	CTRYAG	7 cut(s)	676, 2239, 2535, 2688, 2706, 3810, 3999
SfuI	TTCGAA	1 cut(s)	894
SinI	GGWCC	3 cut(s)	602, 975, 3361
SmaI	CCCGGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	3 cut(s)	1502, 2523, 3327
SmlI	CTYRAG	2 cut(s)	1937, 3701
SmoI	CTYRAG	2 cut(s)	1937, 3701
SseBI	AGGCCT	1 cut(s)	2618
SsiI	CCGC	3 cut(s)	1187, 3695, 4066
SspI	AATATT	4 cut(s)	58, 1718, 3275, 3300
SspMI	CTAG	8 cut(s)	30, 645, 807, 1082, 1538, 1835, 2130, 2280
SstI	GAGCTC	3 cut(s)	112, 2287, 2442
StuI	AGGCCT	1 cut(s)	2618
StyI	CCWWGG	2 cut(s)	2466, 3714
TaiI	ACGT	8 cut(s)	147, 479, 487, 967, 1198, 3468, 3495, 3566
TaqII	GACCGA	3 cut(s)	54, 580, 2224
TatI	WGTACW	4 cut(s)	1431, 2009, 2941, 3148
TscAI	CASTG	7 cut(s)	933, 1267, 1347, 2178, 2248, 2697, 3742
TseFI	GTSAC	2 cut(s)	353, 3818
TseI	GCWGC	9 cut(s)	22, 1520, 1942, 2531, 2687, 3809, 3812, 3992, 4001
Tsp45I	GTSAC	2 cut(s)	353, 3818
TspGWI	ACGGA	1 cut(s)	3236
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	7 cut(s)	933, 1267, 1347, 2178, 2248, 2697, 3742
Van91I	CCANNNNNTGG	1 cut(s)	3737
Vha464I	CTTAAG	1 cut(s)	1937
VpaK11BI	GGWCC	3 cut(s)	602, 975, 3361
XagI	CCTNNNNNAGG	2 cut(s)	3126, 3423
XbaI	TCTAGA	3 cut(s)	644, 806, 1537
XceI	RCATGY	2 cut(s)	207, 1987
XmaI	CCCGGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	2701
XspI	CTAG	8 cut(s)	30, 645, 807, 1082, 1538, 1835, 2130, 2280
ZrmI	AGTACT	1 cut(s)	1433
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.