Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

45460680 .. 45471957

Gene Structure 11278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3852 bp

ATGATCAGTCAAACCAGGGGAATGAAGCAGATATCTGCTCAGGTCGTTGGACCTTTAAATTTAGAATACAGCTTCATTATTCCGAATATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGATGAATCTGATGATGATCCCGATTTTGGGACTGGAAAACCTGGAAGAGCTCAGGAAACATTTGAGAAGATTGTTAGGACTGACGTGAAAGATAATTCCTGTCAAGCCTGTGGTGAAAGTGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCATTAAAGGCTCCTCTACCTGAAAGATGGCGATGTCCGGAATGTGTGAGCCCTCTAACGGATATTGACAAGATTCTGGATTGTGACAGGCGACCTACTGTGGCAGATGATAGTGACGCCACAAAGATGGGTTCAAAGCAGATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTATCATATCTACATTGCACATGCATTCAAGACATATACCCGCGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGGTCTTCCATTAATAACACAGAGGAGGAATTTGTTGCCATTCGACCTGAATGGACAACTGTTGACCGGATCCTTGCTTGCAGTGGTGACGATGAGAAGCAATATCTTGTAAAGTGGCAAGAACTTCCTTACGATGAATGCTACTGGGAAGTGGAGGCTGATATCTCCACATTTCAGCCAGAAATAGAGAAATTCCATAGAATCCAGTCTAGATCTCACAAATTGTCTGGTAAGCAGAAGAGCAGTCCTAAAGATGCTCTCGAATCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTTGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCCTATCAGCTTGAAGGTTTGAACTTTTTACGCTTCTCCTGGTCCAAACAAACTCCTGTGATACTTGCAGATGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTGTTTGAAGACAAAGTCTATCCACATCTAGTAGTGGCTCCACTTTCAACGTTACGAAATTGGGAACGGGAATTCGCAACATGGGCACCTCAAATGAACGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATAAGGGAATACGAATTTTACTTCCCCAAAAATCACAAGAATATCAAGAAAAAGAAATCTGGTCAGATCATTAGTGAGAGCAAGCAAGATAGGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAACTTGGACTCTACATCACTGAAACCGATAAAGTGGGAGTGCATGATTGTTGATGAAGGACATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTACTGGACGAATCATCGCACACTTCTGACTGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTCATGCTTATGCACTTCCTTGATGCTGGCAAGTTTGCAAGTCTAGAGGAGTTCCAAGAAGAGTTTAAGGATCTCAACGAAGAACAGCAGATCTCCAGGCTTCACAAAATTCTTGCTCCTCATCTTCTTAGAAGGGTGAAAAAAGATGTCATGAAAGAATTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGCAAGCAGAAAGAATATTACAAAGCAATTCTGACTCGTAACTATCAGATACTAACTCGTTGTGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAGTTGCGCAAGCTCTGTTGTCATGCTTATATGCTCGAGGGAGTAGAACCGGACATAGAAGATGCCAATGAATCTCACAAACAACTTTTGGAATCTTCTGGAAAACTGCAAGTATTGGACAAAATGCTGAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTCAATGCCAAAAATTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCAGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTGGTTGTTGGAAGGTTAAAGGCTCAAAACATCAACCAGGAAGAGCTAGATGACATCATTCGATACGGATCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCGGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGAGAGATTACTTGATCGTGAACAAGCTGGGGATGATGACACTCCGTTGGAGGAAGAACATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGGCGTAGAAGAGGAGGAACCAAAAAGGCTGCAGTTGACGATGGTATCTGTTGAAGACGATGATCTCGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGAAAACTACGAAACTGAAGTGACGGATATTGAAACAGCTTCCTCTGGACCTCTGTCTGGAAATCTTTCTGCAGGGAGAAAGCCTAACAAAAAGAGAAGTCGTGTGGATAGTGCAGAACCCCTTCCTTTGATGGAAGGAGAAGGAAATTCATTCAAAGTCTTGGGCTTCAATCAAAATCAGAGGGCTACATTTCTAAAAAATTTTATGAGGTTTGGGATGGTGGATGATGACTATAAGGAGTTTGTAGCACACATGAAGCAGAAGACATATGAAGAAATAAAAGCTTATGCTACTCTATTCTTGAAACACATAATTGAACCATTCACAGACTCCCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAATATAACGGACGTACTTGTTCGGTATTCAGTTATGTCTATGATTCATAAAAAAGCAAAGTTTGCAACAGAAAATCCAGGCGCTCCTTTATATGAAGATTACATCCTGTTCCGTTACCCAGGATTGAAGGGTGGCAAATTTTGGAAGGTGGATCATGATGGGATATTACTGCATGCTGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGACGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAAGAGTTGAACCTTCCTTTCCCAGGGCAGGTTAAAGCACAAAATGGAGCACATGCTAATACTGAAGCACCTGGTAACGCTGCTGGAAATGGTAATGGGAATGACGTAGGAGAAAATGTAGCTCAGGGAACCCTTGATCCAGTAAACCAGCCTCAATCATATCCAGAGTCTTCTATGTCGCATCATTCTAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGGATGGCAACAATAAAGAAGCCCAGAAAGAATACTATGATGAGTTGTATGCAAATGAGATTGCGGAGCTTGAGAAGGAAACCATGGGAACGAATTTGCCATACACTGCGGATACTGATAAGCAAATGGGTGATCAGTTGCCAATAGTTGAAGAAATCAGCTCGGAAGAAATTCTAGCTGCAGCTTGTGACAACAATCCAGATCGTTTAAAATTGCCTCAGCTTTTTAATGAGATGTGCAAACTTGTGGAAGGAACTGCCCCTGAGTCTCTGCAGACTTCTTTTGAAACCATCTGCGAAGACGTACTAAGCATGACTGCCCCCTCTCCTGGAGGTTCGTGTTTGCCTCAGACAGGTCCAACAGTGCCCCAAACAGCTGGAAATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1283

Amino Acids

146.35

Weight (kDa)

5.36

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	83 - 124	1.1e-07	PHD-finger
Chromo	PF00385	214 - 261	6.2e-13	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	304 - 485	7.2e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	308 - 604	4.9e-80	SNF2-related domain
Helicase_C	PF00271	629 - 711	6.1e-18	Helicase conserved C-terminal domain
CHDII_SANT-like	PF06461	889 - 1021	1.8e-51	CHD subfamily II, SANT-like domain
HTH_CHD1_Hrp3	PF23588	1036 - 1074	8.2e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
Acc16I	TGCGCA	2 cut(s)	113, 1787
Acc36I	ACCTGC	1 cut(s)	3235
AccB1I	GGYRCC	1 cut(s)	1123
AccII	CGCG	1 cut(s)	547
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	5 cut(s)	545, 1172, 2333, 3524, 3569
AclI	AACGTT	2 cut(s)	1088, 1137
AclWI	GGATC	8 cut(s)	158, 646, 659, 1277, 1557, 2305, 3123, 3347
AcuI	CTGAAG	3 cut(s)	1442, 2631, 3300
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	4 cut(s)	910, 1418, 2979, 3765
AjiI	CACGTC	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	2204, 2236
AloI	GAACNNNNNNTCC	2 cut(s)	3337, 3369
Alw21I	GWGCWC	4 cut(s)	199, 1753, 2122, 3268
Alw26I	GTCTC	4 cut(s)	281, 1379, 1948, 3732
Alw44I	GTGCAC	1 cut(s)	1749
AlwI	GGATC	8 cut(s)	158, 646, 659, 1277, 1557, 2305, 3123, 3347
Ama87I	CYCGRG	1 cut(s)	1814
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	2451
ApaLI	GTGCAC	1 cut(s)	1749
ApeKI	GCWGC	7 cut(s)	109, 1680, 2366, 2521, 3296, 3638, 3641
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	3 cut(s)	2659, 2715, 3630
AspLEI	GCGC	3 cut(s)	114, 1788, 3047
AspS9I	GGNCC	5 cut(s)	50, 960, 2642, 3190, 3815
AsuHPI	GGTGA	5 cut(s)	272, 680, 1627, 2158, 3602
AvaI	CYCGRG	1 cut(s)	1814
AvaII	GGWCC	5 cut(s)	50, 960, 2642, 3190, 3815
BaeGI	GKGCMC	3 cut(s)	1126, 1753, 3828
BaeI	ACNNNNGTAYC	2 cut(s)	2520, 2553
BamHI	GGATCC	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	1123
BanII	GRGCYC	3 cut(s)	199, 380, 2122
BauI	CACGAG	1 cut(s)	2169
BbsI	GAAGAC	6 cut(s)	579, 1053, 2553, 2864, 3378, 3765
Bbv12I	GWGCWC	4 cut(s)	199, 1753, 2122, 3268
BbvCI	CCTCAGC	1 cut(s)	3678
BbvI	GCAGC	7 cut(s)	96, 1692, 2353, 2508, 3283, 3625, 3653
BciVI	GTATCC	1 cut(s)	3565
BclI	TGATCA	3 cut(s)	3, 2064, 3592
BcoDI	GTCTC	4 cut(s)	281, 1379, 1948, 3732
BfaI	CTAG	9 cut(s)	117, 792, 1067, 1523, 2019, 2115, 2276, 3405, 3635
BfmI	CTRYAG	4 cut(s)	2522, 2664, 3639, 3731
BfoI	RGCGCY	1 cut(s)	3048
BfuAI	ACCTGC	1 cut(s)	3235
BfuI	GTATCC	1 cut(s)	3565
BglII	AGATCT	3 cut(s)	794, 1569, 2098
BisI	GCNGC	7 cut(s)	110, 1681, 2367, 2522, 3297, 3639, 3642
BlsI	GCNGC	7 cut(s)	111, 1682, 2368, 2523, 3298, 3640, 3643
BmcAI	AGTACT	1 cut(s)	1418
Bme18I	GGWCC	5 cut(s)	50, 960, 2642, 3190, 3815
BmeT110I	CYCGRG	1 cut(s)	1814
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	5 cut(s)	50, 960, 2642, 3190, 3815
BmiI	GGNNCC	6 cut(s)	339, 653, 1077, 1125, 2511, 3346
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	8 cut(s)	826, 925, 1043, 1492, 1831, 2184, 2353, 3406
BmuI	ACTGGG	1 cut(s)	736
BoxI	GACNNNNGTC	1 cut(s)	2647
BpiI	GAAGAC	6 cut(s)	579, 1053, 2553, 2864, 3378, 3765
BplI	GAGNNNNNCTC	2 cut(s)	3438, 3470
BpmI	CTGGAG	3 cut(s)	924, 1558, 3810
Bpu10I	CCTNAGC	4 cut(s)	39, 198, 3339, 3678
BpuEI	CTTGAG	1 cut(s)	3551
Bsa29I	ATCGAT	1 cut(s)	1972
BsaBI	GATNNNNATC	3 cut(s)	162, 2085, 2296
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	6 cut(s)	15, 3082, 3193, 3238, 3239, 3543
BsaWI	WCCGGW	3 cut(s)	364, 648, 1828
BsaXI	ACNNNNNCTCC	4 cut(s)	1435, 1465, 3318, 3348
Bse1I	ACTGG	6 cut(s)	184, 731, 787, 1424, 1450, 3356
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	3 cut(s)	162, 2085, 2296
BseAI	TCCGGA	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	1972
BseDI	CCNNGG	6 cut(s)	15, 3082, 3193, 3238, 3239, 3543
BseGI	GGATG	8 cut(s)	916, 1477, 2410, 2599, 2817, 2824, 3066, 3469
BseJI	GATNNNNATC	3 cut(s)	162, 2085, 2296
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	7 cut(s)	53, 212, 1941, 3353, 3692, 3714, 3821
BseNI	ACTGG	6 cut(s)	184, 731, 787, 1424, 1450, 3356
BseRI	GAGGAG	6 cut(s)	330, 620, 1443, 1541, 1587, 2519
BseSI	GKGCMC	3 cut(s)	1126, 1753, 3828
BseXI	GCAGC	7 cut(s)	96, 1692, 2353, 2508, 3283, 3625, 3653
BseYI	CCCAGC	2 cut(s)	2024, 2399
BsgI	GTGCAG	1 cut(s)	2727
Bsh1236I	CGCG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	2453
BshNI	GGYRCC	1 cut(s)	1123
BshVI	ATCGAT	1 cut(s)	1972
BsiHKAI	GWGCWC	4 cut(s)	199, 1753, 2122, 3268
BsiHKCI	CYCGRG	1 cut(s)	1814
BsiSI	CCGG	3 cut(s)	365, 649, 1829
BslFI	GGGAC	4 cut(s)	190, 516, 1011, 2933
BsmAI	GTCTC	4 cut(s)	281, 1379, 1948, 3732
BsmBI	CGTCTC	1 cut(s)	1379
BsmFI	GGGAC	4 cut(s)	190, 516, 1011, 2933
BsmI	GAATGC	2 cut(s)	528, 725
BsnI	GGCC	1 cut(s)	2453
BsoBI	CYCGRG	1 cut(s)	1814
Bsp1286I	GDGCHC	7 cut(s)	199, 380, 1126, 1753, 2122, 3268, 3828
Bsp13I	TCCGGA	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	3543
BspACI	CCGC	5 cut(s)	545, 1172, 2333, 3524, 3569
BspANI	GGCC	1 cut(s)	2453
BspCNI	CTCAG	7 cut(s)	52, 211, 1942, 3352, 3691, 3715, 3820
BspDI	ATCGAT	1 cut(s)	1972
BspEI	TCCGGA	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	547
BspHI	TCATGA	2 cut(s)	1629, 3118
BspLI	GGNNCC	6 cut(s)	339, 653, 1077, 1125, 2511, 3346
BspMAI	CTGCAG	4 cut(s)	2526, 2668, 3643, 3735
BspMI	ACCTGC	1 cut(s)	3235
BspPI	GGATC	8 cut(s)	158, 646, 659, 1277, 1557, 2305, 3123, 3347
BspQI	GCTCTTC	4 cut(s)	187, 815, 1162, 2265
BspT107I	GGYRCC	1 cut(s)	1123
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	6 cut(s)	184, 731, 787, 1424, 1450, 3356
BssECI	CCNNGG	6 cut(s)	15, 3082, 3193, 3238, 3239, 3543
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	2169
BssT1I	CCWWGG	1 cut(s)	3543
Bst2BI	CACGAG	1 cut(s)	2169
Bst4CI	ACNGT	6 cut(s)	427, 643, 876, 887, 2062, 3823
Bst6I	CTCTTC	8 cut(s)	187, 815, 1162, 1461, 1533, 2265, 2496, 3439
BstACI	GRCGYC	1 cut(s)	444
BstAPI	GCANNNNNTGC	2 cut(s)	308, 3026
BstC8I	GCNNGC	7 cut(s)	661, 1259, 1507, 1685, 1790, 3138, 3171
BstDSI	CCRYGG	1 cut(s)	3543
BstENI	CCTNNNNNAGG	3 cut(s)	2955, 3237, 3810
BstF5I	GGATG	8 cut(s)	916, 1477, 2410, 2599, 2817, 2824, 3066, 3469
BstFNI	CGCG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	3048
BstHHI	GCGC	3 cut(s)	114, 1788, 3047
BstMAI	GTCTC	4 cut(s)	281, 1379, 1948, 3732
BstMWI	GCNNNNNNNGC	7 cut(s)	308, 553, 1031, 1121, 1912, 3026, 3448
BstNSI	RCATGY	4 cut(s)	294, 528, 3140, 3272
BstPAI	GACNNNNGTC	1 cut(s)	2647
BstSFI	CTRYAG	4 cut(s)	2522, 2664, 3639, 3731
BstSLI	GKGCMC	3 cut(s)	1126, 1753, 3828
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	7 cut(s)	96, 1692, 2353, 2508, 3283, 3625, 3653
BstV2I	GAAGAC	6 cut(s)	579, 1053, 2553, 2864, 3378, 3765
BstX2I	RGATCY	5 cut(s)	651, 794, 1549, 1569, 2098
BstXI	CCANNNNNNTGG	2 cut(s)	454, 3836
BstYI	RGATCY	5 cut(s)	651, 794, 1549, 1569, 2098
Bsu15I	ATCGAT	1 cut(s)	1972
BsuI	GTATCC	1 cut(s)	3565
BsuRI	GGCC	1 cut(s)	2453
BsuTUI	ATCGAT	1 cut(s)	1972
BtgI	CCRYGG	1 cut(s)	3543
BtgZI	GCGATG	2 cut(s)	373, 1415
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	8 cut(s)	916, 1477, 2410, 2599, 2817, 2824, 3066, 3469
BtsI	GCAGTG	3 cut(s)	670, 911, 3564
BtsIMutI	CAGTG	6 cut(s)	670, 911, 1325, 2067, 3564, 3828
BveI	ACCTGC	1 cut(s)	3235
Cac8I	GCNNGC	7 cut(s)	661, 1259, 1507, 1685, 1790, 3138, 3171
CciI	TCATGA	2 cut(s)	1629, 3118
CfoI	GCGC	3 cut(s)	114, 1788, 3047
Cfr13I	GGNCC	5 cut(s)	50, 960, 2642, 3190, 3815
ClaI	ATCGAT	1 cut(s)	1972
CseI	GACGC	2 cut(s)	452, 536
CsiI	ACCWGGT	1 cut(s)	3286
Csp6I	GTAC	4 cut(s)	909, 1417, 2978, 3764
CviQI	GTAC	4 cut(s)	909, 1417, 2978, 3764
DraI	TTTAAA	3 cut(s)	57, 2448, 3669
Eam1104I	CTCTTC	8 cut(s)	187, 815, 1162, 1461, 1533, 2265, 2496, 3439
EarI	CTCTTC	8 cut(s)	187, 815, 1162, 1461, 1533, 2265, 2496, 3439
Ecl136II	GAGCTC	2 cut(s)	197, 2120
Eco130I	CCWWGG	1 cut(s)	3543
Eco147I	AGGCCT	1 cut(s)	2453
Eco24I	GRGCYC	3 cut(s)	199, 380, 2122
Eco32I	GATATC	3 cut(s)	33, 745, 1758
Eco47I	GGWCC	5 cut(s)	50, 960, 2642, 3190, 3815
Eco53kI	GAGCTC	2 cut(s)	197, 2120
Eco57I	CTGAAG	3 cut(s)	1442, 2631, 3300
Eco88I	CYCGRG	1 cut(s)	1814
EcoICRI	GAGCTC	2 cut(s)	197, 2120
EcoNI	CCTNNNNNAGG	3 cut(s)	2955, 3237, 3810
EcoO109I	RGGNCCY	1 cut(s)	3190
EcoRI	GAATTC	1 cut(s)	1109
EcoRV	GATATC	3 cut(s)	33, 745, 1758
EcoT14I	CCWWGG	1 cut(s)	3543
EcoT22I	ATGCAT	2 cut(s)	304, 530
EcoT38I	GRGCYC	3 cut(s)	199, 380, 2122
ErhI	CCWWGG	1 cut(s)	3543
Esp3I	CGTCTC	1 cut(s)	1379
FaqI	GGGAC	4 cut(s)	190, 516, 1011, 2933
FauI	CCCGC	2 cut(s)	552, 2326
FauNDI	CATATG	2 cut(s)	1297, 2863
FbaI	TGATCA	3 cut(s)	3, 2064, 3592
Fnu4HI	GCNGC	7 cut(s)	110, 1681, 2367, 2522, 3297, 3639, 3642
FokI	GGATG	8 cut(s)	903, 1484, 2417, 2606, 2824, 2831, 3053, 3476
FriOI	GRGCYC	3 cut(s)	199, 380, 2122
Fsp4HI	GCNGC	7 cut(s)	110, 1681, 2367, 2522, 3297, 3639, 3642
FspBI	CTAG	9 cut(s)	117, 792, 1067, 1523, 2019, 2115, 2276, 3405, 3635
FspI	TGCGCA	2 cut(s)	113, 1787
GlaI	GCGC	3 cut(s)	113, 1787, 3046
GluI	GCNGC	7 cut(s)	110, 1681, 2367, 2522, 3297, 3639, 3642
GsaI	CCCAGC	2 cut(s)	2028, 2403
GsuI	CTGGAG	3 cut(s)	924, 1558, 3810
HaeII	RGCGCY	1 cut(s)	3048
HaeIII	GGCC	1 cut(s)	2453
HapII	CCGG	3 cut(s)	365, 649, 1829
HgaI	GACGC	2 cut(s)	452, 536
HhaI	GCGC	3 cut(s)	114, 1788, 3047
Hin1I	GRCGYC	1 cut(s)	444
Hin6I	GCGC	3 cut(s)	112, 1786, 3045
HinP1I	GCGC	3 cut(s)	112, 1786, 3045
HincII	GTYRAC	4 cut(s)	565, 646, 2529, 3181
HindII	GTYRAC	4 cut(s)	565, 646, 2529, 3181
HindIII	AAGCTT	1 cut(s)	2877
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	3 cut(s)	365, 649, 1829
HphI	GGTGA	5 cut(s)	272, 680, 1627, 2158, 3602
Hpy166II	GTNNAC	9 cut(s)	320, 565, 646, 911, 1751, 2393, 2529, 3181, 3361
Hpy8I	GTNNAC	9 cut(s)	320, 565, 646, 911, 1751, 2393, 2529, 3181, 3361
HpyCH4III	ACNGT	6 cut(s)	427, 643, 876, 887, 2062, 3823
HpyCH4IV	ACGT	6 cut(s)	231, 1088, 1137, 2976, 3321, 3762
HpyF10VI	GCNNNNNNNGC	7 cut(s)	308, 553, 1031, 1121, 1912, 3026, 3448
HpySE526I	ACGT	6 cut(s)	231, 1088, 1137, 2976, 3321, 3762
Hsp92I	GRCGYC	1 cut(s)	444
HspAI	GCGC	3 cut(s)	112, 1786, 3045
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	3 cut(s)	3, 2064, 3592
KspAI	GTTAAC	1 cut(s)	565
LguI	GCTCTTC	4 cut(s)	187, 815, 1162, 2265
LmnI	GCTCC	7 cut(s)	343, 1081, 1600, 1946, 3052, 3263, 3526
Lsp1109I	GCAGC	7 cut(s)	96, 1692, 2353, 2508, 3283, 3625, 3653
LweI	GCATC	8 cut(s)	826, 925, 1043, 1492, 1831, 2184, 2353, 3406
MabI	ACCWGGT	1 cut(s)	3286
MaeI	CTAG	9 cut(s)	117, 792, 1067, 1523, 2019, 2115, 2276, 3405, 3635
MaeII	ACGT	6 cut(s)	231, 1088, 1137, 2976, 3321, 3762
MaeIII	GTNAC	9 cut(s)	410, 440, 668, 1089, 1718, 2614, 3077, 3290, 3647
MfeI	CAATTG	1 cut(s)	2178
MflI	RGATCY	5 cut(s)	651, 794, 1549, 1569, 2098
MhlI	GDGCHC	7 cut(s)	199, 380, 1126, 1753, 2122, 3268, 3828
MlyI	GAGTC	6 cut(s)	1310, 1708, 2918, 2955, 3392, 3734
MmeI	TCCRAC	4 cut(s)	28, 2218, 2400, 3842
Mph1103I	ATGCAT	2 cut(s)	304, 530
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	3 cut(s)	2659, 2715, 3630
MslI	CAYNNNNRTG	5 cut(s)	452, 1487, 2358, 2436, 3156
MspA1I	CMGCKG	1 cut(s)	3836
MspI	CCGG	3 cut(s)	365, 649, 1829
MunI	CAATTG	1 cut(s)	2178
Mva1269I	GAATGC	2 cut(s)	528, 725
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	7 cut(s)	308, 553, 1031, 1121, 1912, 3026, 3448
NcoI	CCATGG	1 cut(s)	3543
NdeI	CATATG	2 cut(s)	1297, 2863
NlaIV	GGNNCC	6 cut(s)	339, 653, 1077, 1125, 2511, 3346
NmuCI	GTSAC	5 cut(s)	410, 440, 668, 2614, 3647
NsbI	TGCGCA	2 cut(s)	113, 1787
NsiI	ATGCAT	2 cut(s)	304, 530
NspI	RCATGY	4 cut(s)	294, 528, 3140, 3272
PaeI	GCATGC	1 cut(s)	3140
PaeR7I	CTCGAG	1 cut(s)	1814
PagI	TCATGA	2 cut(s)	1629, 3118
PasI	CCCWGGG	1 cut(s)	3239
PceI	AGGCCT	1 cut(s)	2453
PciSI	GCTCTTC	4 cut(s)	187, 815, 1162, 2265
PctI	GAATGC	2 cut(s)	528, 725
PdmI	GAANNNNTTC	3 cut(s)	2659, 2715, 3630
PflFI	GACNNNGTC	2 cut(s)	1052, 1371
PfoI	TCCNGGA	1 cut(s)	3787
PkrI	GCNGC	7 cut(s)	111, 1682, 2368, 2523, 3298, 3640, 3643
PleI	GAGTC	6 cut(s)	1310, 1708, 2918, 2955, 3391, 3733
PpsI	GAGTC	6 cut(s)	1310, 1708, 2918, 2955, 3391, 3733
PpuMI	RGGWCCY	1 cut(s)	3190
PshAI	GACNNNNGTC	1 cut(s)	2647
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	141
Psp124BI	GAGCTC	2 cut(s)	199, 2122
Psp1406I	AACGTT	2 cut(s)	1088, 1137
Psp5II	RGGWCCY	1 cut(s)	3190
PspFI	CCCAGC	2 cut(s)	2024, 2399
PspN4I	GGNNCC	6 cut(s)	339, 653, 1077, 1125, 2511, 3346
PspPI	GGNCC	5 cut(s)	50, 960, 2642, 3190, 3815
PspPPI	RGGWCCY	1 cut(s)	3190
PspXI	VCTCGAGB	1 cut(s)	1814
PsrI	GAACNNNNNNTAC	2 cut(s)	1647, 1679
PstI	CTGCAG	4 cut(s)	2526, 2668, 3643, 3735
PsuI	RGATCY	5 cut(s)	651, 794, 1549, 1569, 2098
PsyI	GACNNNGTC	2 cut(s)	1052, 1371
PvuII	CAGCTG	1 cut(s)	3836
RsaI	GTAC	4 cut(s)	910, 1418, 2979, 3765
RsaNI	GTAC	4 cut(s)	909, 1417, 2978, 3764
RseI	CAYNNNNRTG	5 cut(s)	452, 1487, 2358, 2436, 3156
SacI	GAGCTC	2 cut(s)	199, 2122
SapI	GCTCTTC	4 cut(s)	187, 815, 1162, 2265
SatI	GCNGC	7 cut(s)	110, 1681, 2367, 2522, 3297, 3639, 3642
Sau96I	GGNCC	5 cut(s)	50, 960, 2642, 3190, 3815
ScaI	AGTACT	1 cut(s)	1418
SchI	GAGTC	6 cut(s)	1310, 1708, 2918, 2955, 3392, 3734
SduI	GDGCHC	7 cut(s)	199, 380, 1126, 1753, 2122, 3268, 3828
SexAI	ACCWGGT	1 cut(s)	3286
SfaNI	GCATC	8 cut(s)	826, 925, 1043, 1492, 1831, 2184, 2353, 3406
SfcI	CTRYAG	4 cut(s)	2522, 2664, 3639, 3731
Sfr274I	CTCGAG	1 cut(s)	1814
SinI	GGWCC	5 cut(s)	50, 960, 2642, 3190, 3815
SlaI	CTCGAG	1 cut(s)	1814
SmiMI	CAYNNNNRTG	5 cut(s)	452, 1487, 2358, 2436, 3156
SmlI	CTYRAG	2 cut(s)	1814, 3530
SmoI	CTYRAG	2 cut(s)	1814, 3530
SphI	GCATGC	1 cut(s)	3140
SseBI	AGGCCT	1 cut(s)	2453
SsiI	CCGC	5 cut(s)	545, 1172, 2333, 3524, 3569
SspI	AATATT	2 cut(s)	145, 1697
SspMI	CTAG	9 cut(s)	117, 792, 1067, 1523, 2019, 2115, 2276, 3405, 3635
SstI	GAGCTC	2 cut(s)	199, 2122
StuI	AGGCCT	1 cut(s)	2453
StyI	CCWWGG	1 cut(s)	3543
TaaI	ACNGT	6 cut(s)	427, 643, 876, 887, 2062, 3823
TaiI	ACGT	6 cut(s)	234, 1091, 1140, 2979, 3324, 3765
TaqI	TCGA	6 cut(s)	625, 843, 1815, 1972, 2125, 2290
TaqII	GACCGA	1 cut(s)	141
TatI	WGTACW	1 cut(s)	1416
TscAI	CASTG	6 cut(s)	670, 918, 1332, 2067, 3571, 3828
TseFI	GTSAC	5 cut(s)	410, 440, 668, 2614, 3647
TseI	GCWGC	7 cut(s)	109, 1680, 2366, 2521, 3296, 3638, 3641
Tsp45I	GTSAC	5 cut(s)	410, 440, 668, 2614, 3647
TspGWI	ACGGA	6 cut(s)	401, 2310, 2406, 2633, 2987, 3065
TspRI	CASTG	6 cut(s)	670, 918, 1332, 2067, 3571, 3828
Tth111I	GACNNNGTC	2 cut(s)	1052, 1371
VneI	GTGCAC	1 cut(s)	1749
VpaK11BI	GGWCC	5 cut(s)	50, 960, 2642, 3190, 3815
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	3 cut(s)	2955, 3237, 3810
XbaI	TCTAGA	3 cut(s)	791, 1522, 3404
XceI	RCATGY	4 cut(s)	294, 528, 3140, 3272
XhoI	CTCGAG	1 cut(s)	1814
XmnI	GAANNNNTTC	3 cut(s)	2659, 2715, 3630
XspI	CTAG	9 cut(s)	117, 792, 1067, 1523, 2019, 2115, 2276, 3405, 3635
ZrmI	AGTACT	1 cut(s)	1418
Zsp2I	ATGCAT	2 cut(s)	304, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.