Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

28992837 .. 28995250

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTGGATCTCAGCCCCAGATGCAAGTACAAGGTGTGCAGGCGACCTACTGTGGCGGATGATAGTGATGCCACAAAGATGGGTTCAAGGCAGATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTATCATATCTACATTGCACATGGATTCTTGAGAAAGAATTTTTCAAAGCATTCAAGACATACCCGCGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGGTCTTCCATTAATAACACAGAGGAGGAATTTGTTGCCATTCGACCCGAATGGACAACTGTTGACCGGATCCTTGCTTGCAGGGGCGATGATGAGAAGCAATATCATCATTATCATGTAAAGTGGCAAGAACTTCCTTACGATGAATGCTATTGGGAAGTGGAGGCTGATATCTCTACATTTCAGCCAGAAATAGAGAAATTCCATAGAATCCAGTCTAGATCTCACAAATTGTCTGGTAAGCAGAAGAGCAGTCTTAAAGATGCTCTCGAATCAAAAAAGAAGCAGAAAGAGTATCAACAGTTTGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCCTATCAGCTTGAAGGTTTGAACTTTTTACGCTTCTCCTGGTCCAAACGAACTCCTGTGATACTTGCAGATGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTGTATGAAGAGAAAGTCTATCCACATCTAGTGGTGAGGAGAGGAGCAGACAAAGCGGAGATTTACAGTCTTGCTTTCTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGACAAGGGTACTGTCCGTGTTTTCAGCGTAAAGGTTGACTCAGGATCTTTGGGGAATGATGGATCATCCAGTACATCAGAAATTAGTGGTTCTAATTCATCAGGCATTTCATCTCTGTCTTACATCAAAGATAATATATTTTGGTATCTTGCACTTGAAGTTCTGATTTCTCAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

328

Amino Acids

37.86

Weight (kDa)

8.85

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chromo	PF00385	31 - 56	1.6e-07	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	97 - 147	1.3e-14	Chromo (CHRromatin Organisation MOdifier) domain
SNF2-rel_dom	PF00176	194 - 238	2.7e-10	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AciI	CCGC	3 cut(s)	56, 194, 752
AclWI	GGATC	5 cut(s)	15, 295, 308, 859, 877
AcsI	RAATTY	4 cut(s)	167, 260, 431, 551
AfaI	GTAC	4 cut(s)	29, 568, 817, 880
AgsI	TTSAA	8 cut(s)	87, 175, 184, 223, 539, 590, 598, 965
AjnI	CCWGG	1 cut(s)	614
AluBI	AGCT	3 cut(s)	586, 683, 797
AluI	AGCT	3 cut(s)	586, 683, 797
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	5 cut(s)	15, 295, 308, 859, 877
ApoI	RAATTY	4 cut(s)	167, 260, 431, 551
AseI	ATTAAT	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	618
AsuHPI	GGTGA	1 cut(s)	742
AsuNHI	GCTAGC	1 cut(s)	793
AvaII	GGWCC	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	228
BccI	CCATC	3 cut(s)	73, 646, 860
BciT130I	CCWGG	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	3 cut(s)	450, 725, 794
BglII	AGATCT	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	5 cut(s)	11, 58, 484, 583, 701
BmtI	GCTAGC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	582
BpuEI	CTTGAG	2 cut(s)	179, 787
BsaWI	WCCGGW	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	445, 876
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	616
BseGI	GGATG	3 cut(s)	64, 574, 872
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	25, 861
BseNI	ACTGG	2 cut(s)	445, 876
BseRI	GAGGAG	3 cut(s)	269, 748, 753
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	2 cut(s)	141, 669
BsmAI	GTCTC	1 cut(s)	805
BsmFI	GGGAC	2 cut(s)	141, 669
BsmI	GAATGC	2 cut(s)	179, 383
Bsp143I	GATC	5 cut(s)	7, 300, 452, 851, 869
BspACI	CCGC	3 cut(s)	56, 194, 752
BspCNI	CTCAG	2 cut(s)	24, 860
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	5 cut(s)	15, 295, 308, 859, 877
BspQI	GCTCTTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	445, 876
BssMI	GATC	5 cut(s)	7, 300, 452, 851, 869
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	6 cut(s)	52, 292, 534, 545, 764, 820
Bst6I	CTCTTC	3 cut(s)	473, 699, 781
BstC8I	GCNNGC	3 cut(s)	41, 310, 795
BstDEI	CTNAG	2 cut(s)	11, 847
BstF5I	GGATG	3 cut(s)	64, 574, 872
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	5 cut(s)	10, 303, 455, 854, 872
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	5 cut(s)	7, 300, 452, 851, 869
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 202, 689, 749
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	614
BstUI	CGCG	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	4 cut(s)	7, 300, 452, 851
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	4 cut(s)	7, 300, 452, 851
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	64, 574, 872
BtsI	GCAGTG	2 cut(s)	569, 780
BtsIMutI	CAGTG	2 cut(s)	569, 780
Cac8I	GCNNGC	3 cut(s)	41, 310, 795
Cfr13I	GGNCC	1 cut(s)	618
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	28, 567, 816, 879
CviAII	CATG	2 cut(s)	150, 347
CviJI	RGCY	7 cut(s)	15, 398, 418, 586, 683, 793, 797
CviKI_1	RGCY	7 cut(s)	15, 398, 418, 586, 683, 793, 797
CviQI	GTAC	4 cut(s)	28, 567, 816, 879
DdeI	CTNAG	2 cut(s)	11, 847
DpnI	GATC	5 cut(s)	9, 302, 454, 853, 871
DpnII	GATC	5 cut(s)	7, 300, 452, 851, 869
Eam1104I	CTCTTC	3 cut(s)	473, 699, 781
EarI	CTCTTC	3 cut(s)	473, 699, 781
EciI	GGCGGA	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	614
EcoRV	GATATC	1 cut(s)	403
FaeI	CATG	2 cut(s)	153, 350
FaqI	GGGAC	2 cut(s)	141, 669
FatI	CATG	2 cut(s)	149, 346
FauI	CCCGC	1 cut(s)	201
FokI	GGATG	3 cut(s)	71, 561, 859
FspBI	CTAG	3 cut(s)	450, 725, 794
GsuI	CTGGAG	1 cut(s)	582
HapII	CCGG	1 cut(s)	298
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	153, 350
HincII	GTYRAC	3 cut(s)	214, 295, 844
HindII	GTYRAC	3 cut(s)	214, 295, 844
HinfI	GANTC	4 cut(s)	154, 441, 503, 845
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	4 cut(s)	214, 295, 569, 844
Hpy188I	TCNGA	2 cut(s)	886, 972
Hpy188III	TCNNGA	7 cut(s)	158, 184, 450, 500, 548, 561, 849
Hpy8I	GTNNAC	4 cut(s)	214, 295, 569, 844
HpyAV	CCTTC	3 cut(s)	118, 202, 584
HpyCH4III	ACNGT	6 cut(s)	52, 292, 534, 545, 764, 820
HpyCH4V	TGCA	7 cut(s)	24, 39, 147, 312, 574, 644, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 202, 689, 749
HpyF3I	CTNAG	2 cut(s)	11, 847
Hsp92II	CATG	2 cut(s)	153, 350
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	7, 300, 452, 851, 869
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	1 cut(s)	740
LweI	GCATC	5 cut(s)	11, 58, 484, 583, 701
MaeI	CTAG	3 cut(s)	450, 725, 794
MaeIII	GTNAC	1 cut(s)	806
MalI	GATC	5 cut(s)	9, 302, 454, 853, 871
MboI	GATC	5 cut(s)	7, 300, 452, 851, 869
MboII	GAAGA	4 cut(s)	228, 490, 716, 768
MflI	RGATCY	4 cut(s)	7, 300, 452, 851
MluCI	AATT	9 cut(s)	167, 217, 260, 431, 461, 551, 888, 901, 980
MlyI	GAGTC	1 cut(s)	839
MnlI	CCTC	6 cut(s)	247, 250, 388, 557, 726, 731
MseI	TTAA	4 cut(s)	102, 213, 243, 489
MslI	CAYNNNNRTG	2 cut(s)	77, 345
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	616
Mva1269I	GAATGC	2 cut(s)	179, 383
MvaI	CCWGG	1 cut(s)	616
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	21, 202, 689, 749
NdeII	GATC	5 cut(s)	7, 300, 452, 851, 869
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	2 cut(s)	153, 350
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	806
PciSI	GCTCTTC	1 cut(s)	473
PctI	GAATGC	2 cut(s)	179, 383
PfeI	GAWTC	3 cut(s)	154, 441, 503
PleI	GAGTC	1 cut(s)	839
PpsI	GAGTC	1 cut(s)	839
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	618
PsuI	RGATCY	4 cut(s)	7, 300, 452, 851
RsaI	GTAC	4 cut(s)	29, 568, 817, 880
RsaNI	GTAC	4 cut(s)	28, 567, 816, 879
RseI	CAYNNNNRTG	2 cut(s)	77, 345
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	102, 213, 243, 489
Sau3AI	GATC	5 cut(s)	7, 300, 452, 851, 869
Sau96I	GGNCC	1 cut(s)	618
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	1 cut(s)	616
SfaNI	GCATC	5 cut(s)	11, 58, 484, 583, 701
SinI	GGWCC	1 cut(s)	618
SmiMI	CAYNNNNRTG	2 cut(s)	77, 345
SmlI	CTYRAG	2 cut(s)	158, 802
SmoI	CTYRAG	2 cut(s)	158, 802
Sse9I	AATT	9 cut(s)	167, 217, 260, 431, 461, 551, 888, 901, 980
SsiI	CCGC	3 cut(s)	56, 194, 752
SspMI	CTAG	3 cut(s)	450, 725, 794
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	6 cut(s)	52, 292, 534, 545, 764, 820
TaqI	TCGA	2 cut(s)	274, 501
TasI	AATT	9 cut(s)	167, 217, 260, 431, 461, 551, 888, 901, 980
TatI	WGTACW	2 cut(s)	27, 878
TfiI	GAWTC	3 cut(s)	154, 441, 503
Tru1I	TTAA	4 cut(s)	102, 213, 243, 489
Tru9I	TTAA	4 cut(s)	102, 213, 243, 489
TscAI	CASTG	2 cut(s)	576, 787
TseFI	GTSAC	1 cut(s)	806
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	4 cut(s)	390, 717, 894, 906
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	2 cut(s)	576, 787
VpaK11BI	GGWCC	1 cut(s)	618
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	4 cut(s)	167, 260, 431, 551
XbaI	TCTAGA	1 cut(s)	449
XspI	CTAG	3 cut(s)	450, 725, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.