Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

9125896 .. 9138333

Gene Structure 12438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4098 bp

ATGAGTAGCTTGGTTGAGAGGCTGCGCACTCGATCAGACCGAAAGCCAATTTATAATATTGACGAGTCTGACGATGATGGTGATTTTGGGACTGGAAAACCTGGAAGAGCTCAGGAAAAGTTTGAGAAGATTGTTAGGACTGACGTGAAAGATAATTCCTGTCAAGCGTGTGGGGAAAGCGAGAATCTTTTGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCATTAAAGGCTCCTCTCCCTGACAGCTGGCGATGTCCGGAATGTGTGAGCCCTCTGACTGACATCGACAAGATTCTGGATTGTGAAATGCGACCTACTGTGGCCGATGATAGTGATGCCTCAAAGCTGGGTTCAAAGCAAATCTTTGTTAAACAATATCTTGTGAAGTGGAAGGGATTATCATATCTACATTGCACATGGATTCCTGAGAAAGAATTTTTCAAAGCGTTCAAGACGTACCCACGTCTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGTTCTTCAAATAATAACACAGATGATGAATTTGTTGCCATTCGACCCGAATGGACAACTGTTGATCGGATCCTTGCTTGCAGGGGCGACGATGAGAAGCAATATCTTGTAAAGTGGAAAGAACTTCCTTATGATGAATGCTATTGGGAGGTGGAGGCTGATATCTCGACATTTCAACCAGAAATAGAGAGATTCCATAAAATACAGTCTAGATCTCAGAAATTGTCTGGTAAGCAGAAGAGTAGTCTTAAAGATGCTCTCGAACCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTCGAACACAGTCCTGAATTTCTTTCTGGAGGTACACTGCATCCCTATCAGCTTGAAGGTTTGAACTTCTTACGTTTCTCCTGGTCCAAACAAACTCATGTCATACTTGCAGACGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTCTTTGAAGAGAGAGTCTATCCACATCTAGTGGTGGCTCCACTTTCAACATTACGAAATTGGGAACGGGAATTTGCTACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATACGTGAATACGAATTTTACTTCCCCAAAAATCACAAGAAGATCAAGAAAAAGAAATCTGGTCAGATCAGTGGGGAAAGCAAGCAAGATAGGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAATTTGGACTCTACATCACTGAAACCGATAAAGTGGGAGTGTATGATTGTTGATGAAGGGCATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATTATTACAGCAGTACTGGACTAATCATCGCACATTGCTGACTGGAACTCCACTTCAGAACAATCTGGACGAACTTTTCATGCTTATGCACTTCCTCGATGCTGCCAAGGTGATCTTTTATTTTTTATCACCCCACACTCCAACCCTATTCGTATCAACACGGGTGAAAAAAGATGTCATGAAAGAACTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGCAAGCAGAAAGAATATTACAAAGCAATTCTGACTCGTAACTATCAGATACTGACTCGTCGTGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAATTGCGCAAGCTCTGTTGTCATGCTTATATGCTAGAGGGAGTCGAACTGGACATAGAAGATGCCAATGAATCTCACAAACAACTTTTGGAATCTTCTGGAAAACTGCAAGTATTGGACAAAATGCTGGTGAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAACACATGTTGGATTTGTTAGAAGACTACTGTACATACAAAAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTTAATGCCAAAAACTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCTGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATCAACCAGGAAGAGCTCGATGACATCATTAGATATGGATCCAAGGAGTTATTTGCTGATGAAAATGATGAAGTAGGAAAATCCCGTCAAATTCATTATGATGATGCCGCGATAGATAGATTACTTGATCGTGAACAAGCTGGGGATGATGATGCTGTGTTGGAGGACGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGCCATAGAAGAGGAGGAACCAGAAAAGGCTGCAGTGGACAGTAGACCTACAGAAAGCGTTTCAGAGAAGACAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGAAGATGATCTCGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTATGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGCACCTCTTTCTGGAACTCTTTCTGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGTGGATAGTGCAGAACCCCCTCCTTTGATGGAAGGAGAAGGAAGATCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTACATTTGTACAAATTTTGATGAGGTTTGGGATGGGGGATTATGACTGGAAGGAGTTTGTAGCACGCATGAAGAAGACATATGAAGAAATAAAAGCTTATGGTACTCTATTCTTGGAACACATAGTTGAACAACCATTAACAGACTCCCCAACCTTTTTGGATGGTGTCCCTAAAGAAGGACTCAGGATTCAAGACGTACTTGTTCGGATTTCTGTTATGTCTATGATTCATCAGAAAGCGAAGTTTGCAACAGAAAATCCAGGCGCTCCTTTGTATGAAGATGACATCATGTTCCGTTACCCAGGACTGAAGGGTAGCAAATATTGGAAGGAGTATCATGATGGAATATTACTGCGTGCCGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAGGAGTTGAATCTTCCTTTTATGAATCTTCCTGTCCCAGGGCAGGTTAAAGCACAAAATACTGAAGCACCTGGTAACGCTGCTGGAAATGGTAATGGAAATGACGTAGGAGAAAATGTAGTTCAGGGAACCGTTGATCCAGTAAACCAACCTCAATCATATCAAGAGTCTTCTACGTTGCATCATTTTAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGAAAGGCAACAATGCAGAAGCCCAGAAAGAATACTTTGATGAATTGTATGCAAATGAGATTGCGGAGCTTGAGAAGGAAACCATTGGGACAAATCCGCCATACACTGGGGAGACCGATAAGCAAATGGGCGATCAGTTGCCAAGAGTTGAAGAAATCGGTTCGGAAGAAATTTTAGCTGCAGCTTGTGACAACGATCCAGATCGTTTAAAGTTGCCTCAGCTTTATAATGAGATGTGCAAACTAGTGGAAGGAACTGCCCCTCAGTCACTGCAGACTTCTTTTGAAACTATCTGCGAAGACATACTAAGCAGGACTCGCGCCCCTGTGCAACAAAATCCTCCTCCCTCAGCACAGCCAACACTAAATGCAGATAGACAACCAGGAGATGAGTCAAAGAGCAATCTTGTAGTCCCTGAATCACCCTCTGCACAAGATAATGCTGCTCCTGCAGCCGAAGTTCAAATGAGAGATTTGGCAACAGAACCCAAGCCCGAAATTGTGGGGTTAGACTCCCGCAACACAGCAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1366

Amino Acids

156.18

Weight (kDa)

5.38

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	54 - 95	7.9e-08	PHD-finger
Chromo	PF00385	115 - 155	2.2e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	193 - 240	7.6e-14	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	283 - 464	1.6e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	287 - 481	2.9e-52	SNF2-related domain
SNF2-rel_dom	PF00176	499 - 567	6.8e-11	SNF2-related domain
HDA2-3	PF11496	579 - 733	1.2e-08	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	591 - 704	1.1e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	827 - 887	3e-24	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	923 - 1055	2.5e-54	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	54, 3789
Acc16I	TGCGCA	2 cut(s)	26, 1676
Acc36I	ACCTGC	1 cut(s)	3352
AccB1I	GGYRCC	1 cut(s)	1060
AccB7I	CCANNNNNTGG	1 cut(s)	3668
AccI	GTMKAC	1 cut(s)	2515
AccII	CGCG	2 cut(s)	2348, 3882
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	5 cut(s)	1109, 2346, 3626, 3659, 4078
AclWI	GGATC	7 cut(s)	583, 596, 1214, 2271, 2284, 3449, 3752
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	4 cut(s)	1379, 2736, 3212, 3402
AdeI	CACNNNGTG	1 cut(s)	1825
AfaI	GTAC	7 cut(s)	479, 847, 1355, 1879, 2892, 2986, 3081
AfiI	CCNNNNNNNGG	6 cut(s)	247, 2756, 3059, 3356, 3361, 3668
AflII	CTTAAG	1 cut(s)	1805
AflIII	ACRYGT	1 cut(s)	1851
AhlI	ACTAGT	1 cut(s)	3805
AjiI	CACGTC	2 cut(s)	145, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	2183, 2215
AloI	GAACNNNNNNTCC	2 cut(s)	3439, 3471
Alw21I	GWGCWC	4 cut(s)	112, 1642, 2101, 2256
Alw26I	GTCTC	4 cut(s)	194, 1316, 1927, 3668
Alw44I	GTGCAC	1 cut(s)	1638
AlwI	GGATC	7 cut(s)	583, 596, 1214, 2271, 2284, 3449, 3752
AlwNI	CAGNNNCTG	2 cut(s)	1621, 3832
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	3 cut(s)	342, 2430, 2472
ApaLI	GTGCAC	1 cut(s)	1638
AseI	ATTAAT	1 cut(s)	1245
Asp700I	GAANNNNTTC	1 cut(s)	2764
AspLEI	GCGC	4 cut(s)	27, 1677, 3149, 3884
AspS9I	GGNCC	2 cut(s)	897, 3292
AsuHPI	GGTGA	7 cut(s)	92, 1461, 1462, 1516, 1810, 2137, 3975
AsuII	TTCGAA	1 cut(s)	816
AvaII	GGWCC	2 cut(s)	897, 3292
BaeGI	GKGCMC	3 cut(s)	1063, 1642, 1821
BamHI	GGATCC	2 cut(s)	588, 2276
BanI	GGYRCC	1 cut(s)	1060
BanII	GRGCYC	4 cut(s)	112, 293, 2101, 2256
BauI	CACGAG	1 cut(s)	2148
BbsI	GAAGAC	5 cut(s)	1875, 2546, 2963, 3480, 3867
Bbv12I	GWGCWC	4 cut(s)	112, 1642, 2101, 2256
BbvCI	CCTCAGC	2 cut(s)	3780, 3910
BceAI	ACGGC	1 cut(s)	3227
BclI	TGATCA	1 cut(s)	2043
BcoDI	GTCTC	4 cut(s)	194, 1316, 1927, 3668
BcuI	ACTAGT	1 cut(s)	3805
BfaI	CTAG	6 cut(s)	729, 1004, 1703, 1998, 2094, 3806
BfmI	CTRYAG	5 cut(s)	2502, 2520, 3741, 3833, 4011
BfoI	RGCGCY	1 cut(s)	3150
BfrI	CTTAAG	1 cut(s)	1805
BfuAI	ACCTGC	1 cut(s)	3352
BglII	AGATCT	1 cut(s)	731
BmcAI	AGTACT	1 cut(s)	1355
Bme18I	GGWCC	2 cut(s)	897, 3292
BmgBI	CACGTC	2 cut(s)	145, 485
BmgT120I	GGNCC	2 cut(s)	897, 3292
BmiI	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2278, 2490, 3448
BmrI	ACTGGG	1 cut(s)	3678
BmuI	ACTGGG	1 cut(s)	3678
BpiI	GAAGAC	5 cut(s)	1875, 2546, 2963, 3480, 3867
BplI	GAGNNNNNCTC	2 cut(s)	3540, 3572
BpmI	CTGGAG	1 cut(s)	861
Bpu10I	CCTNAGC	3 cut(s)	111, 3780, 3910
Bpu14I	TTCGAA	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	3653
Bsa29I	ATCGAT	1 cut(s)	1951
BsaAI	YACGTR	1 cut(s)	1118
BsaBI	GATNNNNATC	3 cut(s)	2064, 2275, 3762
BsaI	GGTCTC	1 cut(s)	3668
BsaJI	CCNNGG	6 cut(s)	1446, 2280, 3184, 3295, 3355, 3356
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	4 cut(s)	1372, 1402, 3420, 3450
Bsc4I	CCNNNNNNNGG	6 cut(s)	247, 2756, 3059, 3356, 3361, 3668
Bse1I	ACTGG	7 cut(s)	97, 1361, 1387, 1722, 2933, 3458, 3673
Bse3DI	GCAATG	2 cut(s)	430, 1373
Bse8I	GATNNNNATC	3 cut(s)	2064, 2275, 3762
BseAI	TCCGGA	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	1951
BseDI	CCNNGG	6 cut(s)	1446, 2280, 3184, 3295, 3355, 3356
BseGI	GGATG	6 cut(s)	853, 2389, 2704, 2731, 2919, 3049
BseJI	GATNNNNATC	3 cut(s)	2064, 2275, 3762
BseLI	CCNNNNNNNGG	6 cut(s)	247, 2756, 3059, 3356, 3361, 3668
BseMI	GCAATG	2 cut(s)	430, 1373
BseMII	CTCAG	8 cut(s)	125, 438, 749, 1920, 3079, 3794, 3839, 3924
BseNI	ACTGG	7 cut(s)	97, 1361, 1387, 1722, 2933, 3458, 3673
BseRI	GAGGAG	3 cut(s)	243, 2498, 3894
BseSI	GKGCMC	3 cut(s)	1063, 1642, 1821
BseYI	CCCAGC	3 cut(s)	367, 2003, 2378
BsgI	GTGCAG	3 cut(s)	2730, 2829, 3975
Bsh1236I	CGCG	2 cut(s)	2348, 3882
BshFI	GGCC	3 cut(s)	344, 2432, 2474
BshNI	GGYRCC	1 cut(s)	1060
BshVI	ATCGAT	1 cut(s)	1951
BsiHKAI	GWGCWC	4 cut(s)	112, 1642, 2101, 2256
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	6 cut(s)	103, 948, 3035, 3338, 3664, 3959
BslI	CCNNNNNNNGG	6 cut(s)	247, 2756, 3059, 3356, 3361, 3668
BsmAI	GTCTC	4 cut(s)	194, 1316, 1927, 3668
BsmBI	CGTCTC	1 cut(s)	1316
BsmFI	GGGAC	6 cut(s)	103, 948, 3035, 3338, 3664, 3959
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	3 cut(s)	344, 2432, 2474
Bso31I	GGTCTC	1 cut(s)	3668
Bsp119I	TTCGAA	1 cut(s)	816
Bsp1286I	GDGCHC	7 cut(s)	112, 293, 1063, 1642, 1821, 2101, 2256
Bsp13I	TCCGGA	1 cut(s)	277
Bsp1407I	TGTACA	2 cut(s)	1877, 2890
BspACI	CCGC	5 cut(s)	1109, 2346, 3626, 3659, 4078
BspANI	GGCC	3 cut(s)	344, 2432, 2474
BspCNI	CTCAG	8 cut(s)	124, 439, 748, 1921, 3078, 3793, 3838, 3923
BspDI	ATCGAT	1 cut(s)	1951
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	2 cut(s)	2348, 3882
BspHI	TCATGA	2 cut(s)	1518, 3220
BspLI	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2278, 2490, 3448
BspMAI	CTGCAG	4 cut(s)	2506, 3745, 3837, 4015
BspMI	ACCTGC	1 cut(s)	3352
BspPI	GGATC	7 cut(s)	583, 596, 1214, 2271, 2284, 3449, 3752
BspQI	GCTCTTC	3 cut(s)	100, 1099, 2244
BspT104I	TTCGAA	1 cut(s)	816
BspT107I	GGYRCC	1 cut(s)	1060
BspTI	CTTAAG	1 cut(s)	1805
BspTNI	GGTCTC	1 cut(s)	3668
BsrDI	GCAATG	2 cut(s)	430, 1373
BsrGI	TGTACA	2 cut(s)	1877, 2890
BsrI	ACTGG	7 cut(s)	97, 1361, 1387, 1722, 2933, 3458, 3673
BssECI	CCNNGG	6 cut(s)	1446, 2280, 3184, 3295, 3355, 3356
BssSI	CACGAG	1 cut(s)	2148
BssT1I	CCWWGG	2 cut(s)	1446, 2280
Bst2BI	CACGAG	1 cut(s)	2148
Bst4CI	ACNGT	9 cut(s)	340, 580, 726, 813, 824, 1877, 2041, 2513, 3451
Bst6I	CTCTTC	9 cut(s)	100, 752, 978, 1099, 1975, 2244, 2475, 2615, 3541
BstAFI	CTTAAG	1 cut(s)	1805
BstAPI	GCANNNNNTGC	2 cut(s)	221, 1825
BstAUI	TGTACA	2 cut(s)	1877, 2890
BstBAI	YACGTR	1 cut(s)	1118
BstBI	TTCGAA	1 cut(s)	816
BstC8I	GCNNGC	8 cut(s)	269, 598, 1196, 1574, 1679, 2947, 3240, 3273
BstENI	CCTNNNNNAGG	2 cut(s)	3057, 3354
BstF5I	GGATG	6 cut(s)	853, 2389, 2704, 2731, 2919, 3049
BstFNI	CGCG	2 cut(s)	2348, 3882
BstH2I	RGCGCY	1 cut(s)	3150
BstHHI	GCGC	4 cut(s)	27, 1677, 3149, 3884
BstMAI	GTCTC	4 cut(s)	194, 1316, 1927, 3668
BstNSI	RCATGY	2 cut(s)	207, 1855
BstSFI	CTRYAG	5 cut(s)	2502, 2520, 3741, 3833, 4011
BstSLI	GKGCMC	3 cut(s)	1063, 1642, 1821
BstUI	CGCG	2 cut(s)	2348, 3882
BstV2I	GAAGAC	5 cut(s)	1875, 2546, 2963, 3480, 3867
BstX2I	RGATCY	3 cut(s)	588, 731, 2276
BstYI	RGATCY	3 cut(s)	588, 731, 2276
Bsu15I	ATCGAT	1 cut(s)	1951
BsuRI	GGCC	3 cut(s)	344, 2432, 2474
BsuTUI	ATCGAT	1 cut(s)	1951
BtgZI	GCGATG	2 cut(s)	286, 1352
BtrI	CACGTC	2 cut(s)	145, 485
BtsCI	GGATG	6 cut(s)	853, 2389, 2704, 2731, 2919, 3049
BtsI	GCAGTG	3 cut(s)	848, 2511, 3830
BtsIMutI	CAGTG	7 cut(s)	848, 1189, 1262, 2046, 2511, 3666, 3830
BveI	ACCTGC	1 cut(s)	3352
Cac8I	GCNNGC	8 cut(s)	269, 598, 1196, 1574, 1679, 2947, 3240, 3273
CaiI	CAGNNNCTG	2 cut(s)	1621, 3832
CciI	TCATGA	2 cut(s)	1518, 3220
CfoI	GCGC	4 cut(s)	27, 1677, 3149, 3884
Cfr13I	GGNCC	2 cut(s)	897, 3292
ClaI	ATCGAT	1 cut(s)	1951
CsiI	ACCWGGT	1 cut(s)	3388
Csp6I	GTAC	7 cut(s)	478, 846, 1354, 1878, 2891, 2985, 3080
CviQI	GTAC	7 cut(s)	478, 846, 1354, 1878, 2891, 2985, 3080
DraI	TTTAAA	2 cut(s)	2427, 3771
DraIII	CACNNNGTG	1 cut(s)	1825
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	9 cut(s)	100, 752, 978, 1099, 1975, 2244, 2475, 2615, 3541
EarI	CTCTTC	9 cut(s)	100, 752, 978, 1099, 1975, 2244, 2475, 2615, 3541
EciI	GGCGGA	1 cut(s)	3648
Ecl136II	GAGCTC	3 cut(s)	110, 2099, 2254
Eco130I	CCWWGG	2 cut(s)	1446, 2280
Eco147I	AGGCCT	1 cut(s)	2432
Eco24I	GRGCYC	4 cut(s)	112, 293, 2101, 2256
Eco31I	GGTCTC	1 cut(s)	3668
Eco32I	GATATC	2 cut(s)	682, 1647
Eco47I	GGWCC	2 cut(s)	897, 3292
Eco53kI	GAGCTC	3 cut(s)	110, 2099, 2254
Eco57I	CTGAAG	4 cut(s)	1379, 2736, 3212, 3402
EcoICRI	GAGCTC	3 cut(s)	110, 2099, 2254
EcoNI	CCTNNNNNAGG	2 cut(s)	3057, 3354
EcoO109I	RGGNCCY	1 cut(s)	3292
EcoRV	GATATC	2 cut(s)	682, 1647
EcoT14I	CCWWGG	2 cut(s)	1446, 2280
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	4 cut(s)	112, 293, 2101, 2256
ErhI	CCWWGG	2 cut(s)	1446, 2280
Esp3I	CGTCTC	1 cut(s)	1316
FalI	AAGNNNNNCTT	6 cut(s)	368, 400, 1439, 1471, 3066, 3098
FaqI	GGGAC	6 cut(s)	103, 948, 3035, 3338, 3664, 3959
FauI	CCCGC	1 cut(s)	4085
FauNDI	CATATG	2 cut(s)	1234, 2962
FbaI	TGATCA	1 cut(s)	2043
FblI	GTMKAC	1 cut(s)	2515
FokI	GGATG	6 cut(s)	840, 2396, 2711, 2738, 2926, 3056
FriOI	GRGCYC	4 cut(s)	112, 293, 2101, 2256
FspBI	CTAG	6 cut(s)	729, 1004, 1703, 1998, 2094, 3806
FspI	TGCGCA	2 cut(s)	26, 1676
GlaI	GCGC	4 cut(s)	26, 1676, 3148, 3883
GsaI	CCCAGC	3 cut(s)	371, 2007, 2382
GsuI	CTGGAG	1 cut(s)	861
HaeII	RGCGCY	1 cut(s)	3150
HaeIII	GGCC	3 cut(s)	344, 2432, 2474
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	4 cut(s)	27, 1677, 3149, 3884
Hin6I	GCGC	4 cut(s)	25, 1675, 3147, 3882
HinP1I	GCGC	4 cut(s)	25, 1675, 3147, 3882
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	2976
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	7 cut(s)	92, 1461, 1462, 1516, 1810, 2137, 3975
Hpy166II	GTNNAC	8 cut(s)	233, 502, 848, 1640, 2372, 2509, 2516, 3463
Hpy8I	GTNNAC	8 cut(s)	233, 502, 848, 1640, 2372, 2509, 2516, 3463
Hpy99I	CGWCG	2 cut(s)	611, 1632
HpyCH4III	ACNGT	9 cut(s)	340, 580, 726, 813, 824, 1877, 2041, 2513, 3451
HpyCH4IV	ACGT	8 cut(s)	144, 476, 484, 886, 1117, 3078, 3423, 3494
HpySE526I	ACGT	8 cut(s)	144, 476, 484, 886, 1117, 3078, 3423, 3494
HspAI	GCGC	4 cut(s)	25, 1675, 3147, 3882
Kpn2I	TCCGGA	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	2043
KspAI	GTTAAC	1 cut(s)	502
LguI	GCTCTTC	3 cut(s)	100, 1099, 2244
LmnI	GCTCC	7 cut(s)	256, 1018, 1925, 2203, 3154, 3628, 4012
MabI	ACCWGGT	1 cut(s)	3388
MaeI	CTAG	6 cut(s)	729, 1004, 1703, 1998, 2094, 3806
MaeII	ACGT	8 cut(s)	144, 476, 484, 886, 1117, 3078, 3423, 3494
MaeIII	GTNAC	6 cut(s)	1607, 2719, 3179, 3392, 3749, 3828
MfeI	CAATTG	1 cut(s)	2157
MflI	RGATCY	3 cut(s)	588, 731, 2276
MhlI	GDGCHC	7 cut(s)	112, 293, 1063, 1642, 1821, 2101, 2256
MmeI	TCCRAC	4 cut(s)	1505, 1836, 2197, 2379
Mph1103I	ATGCAT	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	2764
MslI	CAYNNNNRTG	3 cut(s)	1424, 2337, 3258
MspA1I	CMGCKG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	1805
MspI	CCGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	2157
Mva1269I	GAATGC	1 cut(s)	662
MvnI	CGCG	2 cut(s)	2348, 3882
NdeI	CATATG	2 cut(s)	1234, 2962
NlaIV	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2278, 2490, 3448
NmuCI	GTSAC	3 cut(s)	2719, 3749, 3828
NsbI	TGCGCA	2 cut(s)	26, 1676
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	207, 1855
NspV	TTCGAA	1 cut(s)	816
PagI	TCATGA	2 cut(s)	1518, 3220
PasI	CCCWGGG	1 cut(s)	3356
PceI	AGGCCT	1 cut(s)	2432
PciI	ACATGT	1 cut(s)	1851
PciSI	GCTCTTC	3 cut(s)	100, 1099, 2244
PcsI	WCGNNNNNNNCGW	2 cut(s)	37, 69
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	2764
PflMI	CCANNNNNTGG	1 cut(s)	3668
Ppu21I	YACGTR	1 cut(s)	1118
PpuMI	RGGWCCY	1 cut(s)	3292
PscI	ACATGT	1 cut(s)	1851
PshBI	ATTAAT	1 cut(s)	1245
PsiI	TTATAA	2 cut(s)	54, 3789
Psp124BI	GAGCTC	3 cut(s)	112, 2101, 2256
Psp5II	RGGWCCY	1 cut(s)	3292
PspFI	CCCAGC	3 cut(s)	367, 2003, 2378
PspN4I	GGNNCC	7 cut(s)	252, 590, 1014, 1062, 2278, 2490, 3448
PspPI	GGNCC	2 cut(s)	897, 3292
PspPPI	RGGWCCY	1 cut(s)	3292
PsrI	GAACNNNNNNTAC	2 cut(s)	1536, 1568
PstI	CTGCAG	4 cut(s)	2506, 3745, 3837, 4015
PstNI	CAGNNNCTG	2 cut(s)	1621, 3832
PsuI	RGATCY	3 cut(s)	588, 731, 2276
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	7 cut(s)	479, 847, 1355, 1879, 2892, 2986, 3081
RsaNI	GTAC	7 cut(s)	478, 846, 1354, 1878, 2891, 2985, 3080
RseI	CAYNNNNRTG	3 cut(s)	1424, 2337, 3258
SacI	GAGCTC	3 cut(s)	112, 2101, 2256
SapI	GCTCTTC	3 cut(s)	100, 1099, 2244
Sau96I	GGNCC	2 cut(s)	897, 3292
ScaI	AGTACT	1 cut(s)	1355
SduI	GDGCHC	7 cut(s)	112, 293, 1063, 1642, 1821, 2101, 2256
SexAI	ACCWGGT	1 cut(s)	3388
SfcI	CTRYAG	5 cut(s)	2502, 2520, 3741, 3833, 4011
SfuI	TTCGAA	1 cut(s)	816
SinI	GGWCC	2 cut(s)	897, 3292
SmiMI	CAYNNNNRTG	3 cut(s)	1424, 2337, 3258
SmlI	CTYRAG	2 cut(s)	1805, 3632
SmoI	CTYRAG	2 cut(s)	1805, 3632
SpeI	ACTAGT	1 cut(s)	3805
SseBI	AGGCCT	1 cut(s)	2432
SsiI	CCGC	5 cut(s)	1109, 2346, 3626, 3659, 4078
SspI	AATATT	4 cut(s)	58, 1586, 3206, 3231
SspMI	CTAG	6 cut(s)	729, 1004, 1703, 1998, 2094, 3806
SstI	GAGCTC	3 cut(s)	112, 2101, 2256
StuI	AGGCCT	1 cut(s)	2432
StyI	CCWWGG	2 cut(s)	1446, 2280
TaaI	ACNGT	9 cut(s)	340, 580, 726, 813, 824, 1877, 2041, 2513, 3451
TaiI	ACGT	8 cut(s)	147, 479, 487, 889, 1120, 3081, 3426, 3497
TaqII	GACCGA	2 cut(s)	54, 3692
TatI	WGTACW	3 cut(s)	1353, 1877, 2890
TauI	GCSGC	1 cut(s)	2348
TscAI	CASTG	7 cut(s)	855, 1189, 1269, 2046, 2511, 3673, 3837
TseFI	GTSAC	3 cut(s)	2719, 3749, 3828
Tsp45I	GTSAC	3 cut(s)	2719, 3749, 3828
TspGWI	ACGGA	2 cut(s)	2738, 3167
TspRI	CASTG	7 cut(s)	855, 1189, 1269, 2046, 2511, 3673, 3837
Van91I	CCANNNNNTGG	1 cut(s)	3668
Vha464I	CTTAAG	1 cut(s)	1805
VneI	GTGCAC	1 cut(s)	1638
VpaK11BI	GGWCC	2 cut(s)	897, 3292
VspI	ATTAAT	1 cut(s)	1245
XagI	CCTNNNNNAGG	2 cut(s)	3057, 3354
XbaI	TCTAGA	1 cut(s)	728
XceI	RCATGY	2 cut(s)	207, 1855
XmiI	GTMKAC	1 cut(s)	2515
XmnI	GAANNNNTTC	1 cut(s)	2764
XspI	CTAG	6 cut(s)	729, 1004, 1703, 1998, 2094, 3806
ZrmI	AGTACT	1 cut(s)	1355
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.